Geology topics

Research about New York

Source-linked reports with geographic coverage including New York.

At least 127 records · Page 7Linked to original sources

USGS2023

Contaminant risks in consuming fish from the Area of Concern in the Upper Niagara River

The lack of contemporary data on contaminants in resident fish prevents an analysis of temporal trends in contaminant concentrations and the present-day status of the “Restrictions on Fish and Wildlife Consumption” Beneficial Use Impairment (BUI) in the Niagara River Area of Concern (AOC). During 2018, concentrations of 260 contaminants in four groups of fish species from five areas in or near the upper Niagara River AOC were analyzed to determine the potential risks from fish consumption, responses to remediation in an adjacent AOC, and whether additional remedial actions were warranted in this AOC. The concentrations of most contaminants were generally undetectable or did not exceed established Federal, State, or European Union fish-consumption limits. Several contaminants without State or Federal limits exceeded European Union fish-consumption guidelines in some species and areas. High PCB residues in many bullhead from Scajaquada Creek, some bass from Hoyt Lake, and most common carp from all areas surpassed certain New York and Federal fish-consumption limits and indicate PCBs continue to restrict fish consumption at most study areas. High concentrations of several contaminants in resident fish, especially dioxins and furans in carp, from Cayuga Creek indicate that additional scrutiny of consumption advisories is warranted in this area. Because this study provides a snapshot in time of fish-contaminant data from five areas, additional data from other areas and times, and more detailed information on present-day pollutant sources may be needed before determining the status of the fish-consumption BUI in this AOC.

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USGS2023

Comprehensive assessment of macroinvertebrate community condition and sediment toxicity in the Eighteenmile Creek Area of Concern, New York, 2021

The degradation of benthic communities (benthos) is one of four remaining beneficial use impairments (BUIs) in the Eighteenmile Creek Area of Concern (AOC), located on the south shore of Lake Ontario in New York. The historical rationale for listing this BUI as impaired relied heavily on inferred or expected impact to benthic communities based on elevated contaminant concentrations in bed sediments from past industrial and municipal discharges, hazardous-waste disposal, and pesticide usage. Previous assessments of macroinvertebrate community condition in the AOC have produced inconclusive results, and it remains unclear if contaminated sediments are impairing benthic communities. In 2021, a comprehensive assessment of macroinvertebrate community condition and sediment toxicity was conducted at eight sites in the AOC and six sites in a reference area on Oak Orchard Creek to determine if the removal criteria for this BUI have been met or if additional remedial measures are needed. The New York multi-metric index of biological integrity classified the mean community condition across AOC sites as slightly impacted, and 10-day toxicity tests with Chironomus dilutus and Hyalella azteca found no evidence of toxicity in AOC sediments. Equivalence testing indicated that community condition, and survival and growth of both test species, were not inferior in the AOC relative to the reference area. The weight of evidence from this study and other relevant datasets indicate that sediment contamination is not causing measurable impairment to benthic communities in the Eighteenmile Creek AOC.

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USGS2023

Adjusting design floods for urbanization across groundwater-dominated watersheds of Long Island, NY

The magnitude and variability of floods have increased for many nontidal streams on Long Island (LI), NY since the mid-20th century. One of the most densely populated regions of the United States, LI has experienced amplified floods in step with increases in impervious land cover, storm, and sanitary sewers that have accompanied urban development. To better understand the drivers of observed flood trends and effects of urbanization, a nonstationary flood frequency analysis is conducted, using historical annual peak flow records from 17 gaged watersheds on LI using conditional moments based on physical covariates from a two-stage sequential robust linear regression procedure. Regression results indicate that urban development and precipitation are significant co-predictors of peak flows for LI watersheds that have undergone rapid development during the available peak flow record. In watersheds with less intense urbanization or that were fully developed before the peak flow record began, precipitation alone was a significant explanatory variable. Long-term baseflow patterns identified using a nonparametric smoother explained some patterns of decreasing peak flows and heteroskedasticity in the peak flow records. Fitting a log-Pearson III distribution with these conditional moments, floods corresponding to a 20% annual exceedance probability (AEP) are up to 80% higher under a nonstationary framework compared with stationary under current watershed conditions, and differ significantly (95% confidence) from stationary estimates for 6 out of 17 watersheds. Larger floods corresponding to 1% AEPs do not differ significantly between nonstationary and stationary estimates at a 95% confidence level. Nonmonotonic trends observed in two watersheds indicate that recent stormwater management practices, such as rerouting stormwater outfalls away from the channel, substantially reduce flood frequency. Reduced nonstationary flood quantile estimates at these two watersheds are 20 to 40% lower than stationary estimates when accounting for changing watershed conditions over time. Across LI, stormwater management and water-table fluctuations have increased peak flow variability, characteristic of a late phase urban adjustment period on LI. Results of this study demonstrate that a nonstationary framework is a necessary step forward toward a regional flood-frequency analysis for LI. This nonstationary framework will allow flood managers to update flood discharge estimates to current conditions that reflect altered relationships between urban cover and climate for more targeted planning of flood control, transportation infrastructure, and management of floodplain ecosystems.

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USGS2023

Invasive Round Goby in the Mohawk and Hudson Rivers: What’s the latest?

The Round Goby ( Neogobius melanostomus ) is an invasive benthic fish indigenous to the Ponto-Caspian region of Eurasia. It recently colonized the Great Lakes and has expanded eastward through the New York State Canal System over the past decade. The species was first documented in the Mohawk River watershed in 2014 and was found in the Hudson River in 2021. Round Goby can adversely affect aquatic ecosystems in many ways such as outcompeting native benthic fishes, consuming the eggs of nest-building species such as Smallmouth Bass ( Micropterus dolomieu ), and transferring contaminants to higher trophic levels (e.g., desirable gamefish). They can also carry the viral hemorrhagic septicemia (VHS) virus which has been linked to fish kills in New York and some evidence suggests Round Goby are an important vector in avian botulism outbreaks. However, the presence of Round Goby has also been linked to faster growth rate and larger maximum size of some predators such as Smallmouth Bass. ed watersheds of the northeastern United States.

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USGS2023

Effects of a large flood on sediment and turbidity reduction projects in the Esopus Creek watershed, NY

On December 24-25, 2020, 7.3 to 14.6 cm of rain fell on a large snowpack in the upper Esopus Creek (UEC) watershed in the Catskill Mountains of New York. The resulting flood had an annual exceedance probability (AEP) of 4 to 20% (recurrence intervals of 25 to 5 years) in streams across the watershed, resulted in substantial geomorphic adjustments in some stream channels, and transported the highest sediment concentrations observed since stream restoration projects in the UEC began in 2012. The largest flooding occurred in the Stony Clove Creek subbasin of the UEC which contains 8 sediment and turbidity reduction projects. The UEC is the primary water source for the Ashokan Reservoir, part of New York City’s unfiltered water-supply system. A network of 16 turbidity-only and 13 suspended sediment and turbidity monitoring stations has been in operation within the UEC since October 2016. One of the primary purposes of this monitoring network is to investigate changes in suspended-sediment concentrations (SSC) and turbidity resulting from sediment and turbidity reduction projects (STRPs) implemented in tributaries to the UEC between 2012 and 2018. During the 2 to 8 years following the installation of the projects and prior to the 2020 flooding, declines in SSC and turbidity were measured at all monitoring sites although there were no flows that exceeded a 50% AEP flood. The flood of December 2020 had a 4-percent AEP at the subbasin outlet (Stony Clove Creek below Ox Clove at Chichester NY, USGS station number 01362370) and provided an opportunity to assess the effectiveness of the STRP following a large flood. An order of magnitude increase in suspended-sediment concentration per unit discharge was measured at the outlet of the Stony Clove Creek subbasin following the flood. Increased SSC persisted for 3 months throughout the range in discharge and for at least 1 year at high discharges following the flood. The concentration-discharge relation returned to near pre-flood levels at low discharges but continued to remain above pre-flood levels at high discharges for more than 1 year. Mapped bank erosion increased in all Stony Clove subbasins following the flood and increases in stream contact with clay-rich glacial till and lacustrine sediments were greater relative to increases in contact with alluvium. Large increases in sediment concentration were observed where contact with glacial lacustrine material also increased. Minor increases in sediment concentration per unit discharge were measured from stream reaches where STRP were constructed and substantially less erosion was noted within those reaches relative to non-STRP reaches, though some breaches in revetments were noted.

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USGS2022

Hydrologic effects of leakage from the Catskill Aqueduct on the bedrock-aquifer system near High Falls, New York, November 2019–January 2020

Historical observations by the New York City Department of Environmental Protection (NYCDEP) indicate that the Rondout pressure tunnel has been leaking in the vicinity of the hamlet of High Falls, New York. In the 74 days from November 11, 2019, to January 23, 2020, NYCDEP shut down and partially dewatered the pressure tunnel for inspection and repairs. On November 5–7, 2019 (during normal tunnel operations), and on January 21–22, 2020 (when the tunnel was shut down), the U.S. Geological Survey used a network of 31 groundwater wells to collect water-level elevations and determine the potentiometric surface of the bedrock aquifer adjacent to the Rondout pressure tunnel. When the tunnel was fully pressurized during normal operations, water levels indicated a two-mile-long groundwater mound which trended northeastward, approximately along the regional strike of the bedrock units. The mound ranged in elevation from 250 to 300 feet (ft) above the North American Vertical Datum of 1988 and extended from 1,500 ft southwest of a suspected leak at the Rondout pressure tunnel to about 8,500 ft northeast of the possible leak. During the 74-day shutdown, during which the aqueduct was nonoperational, this groundwater mound decreased in magnitude and extent as it reverted to equilibrium conditions. This resulted in a flattening of the potentiometric surface, represented by two remnant groundwater plateaus. Water-level differences were calculated for wells that may be affected by potential tunnel leakage to determine the influence on the local bedrock aquifer. The five largest water-level differences (77, 61, 49, 42, and 41 ft) occurred in wells that were generally aligned with the northeastward trend of regional bedrock strike; these wells may penetrate the karstic Helderberg Group bedrock unit. Near the suspected tunnel leak, the Helderberg Group overlies the Binnewater Sandstone and the High Falls Shale, both of which produced substantial groundwater inflows during the construction of the Rondout pressure tunnel. Water levels in wells penetrating the Shawangunk Formation just east of Rondout Creek, where the unit is in contact with the High Falls Shale, and in wells penetrating the Esopus Shale, which is adjacent to the Helderberg Group and northwest of the tunnel leak, may be affected by tunnel leakage. It is unclear if water levels in a well 9,000 ft northwest of the suspected tunnel leak are influenced by the tunnel leakage, by another source of artificial recharge, or by both. This well penetrates the Onondaga Limestone in the northwestern part of the study area. An unconsolidated aquifer composed of stratified gravel, sand, silt, and clay overlies the limestone bedrock in this part of study area―additional study is required to determine if this unconsolidated aquifer is affected by tunnel leakage.

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USGS2022

Flood-inundation maps for Schoharie Creek in North Blenheim, New York

Digital flood-inundation maps for a 2.4-mile reach of the Schoharie Creek in North Blenheim, New York, were created by the U.S. Geological Survey (USGS) in cooperation with the New York Power Authority. The flood-inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science website at https://fim.wim.usgs.gov/fim/ , depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage on the Schoharie Creek near North Blenheim, N.Y. (station number 01350212). Near-real-time stage at this streamgage may be obtained on the internet from the USGS National Water Information System at https://waterdata.usgs.gov/ . Flood profiles were computed for the stream reach by means of a two-dimensional implicit finite-volume hydraulic model. The model was calibrated by using the active (as of April 2021) stage-discharge ratings at the USGS streamgages on the Schoharie Creek near North Blenheim (station number 01350212) and at North Blenheim (station number 01350180) and documented high-water marks in the study reach from the floods of August 28, 2011; January 19, 1996; and April 4, 1987. The hydraulic model was used to compute 13 water-surface profiles for flood stages at 1-foot intervals referenced to the datum at the streamgage on the Schoharie Creek near North Blenheim, N.Y. (01350212). These profiles range from 14 feet, or near bankfull, to 26 feet, which is the highest whole-foot increment on the stage-discharge rating for the streamgage. The simulated water-surface profiles were then combined with a geographic information system digital elevation model (derived from light detection and ranging data having a 0.52-foot vertical accuracy and 3.3-foot [1-meter] horizontal resolution) to delineate the area flooded at each stage. Flood inundation maps, along with near-real-time stage data from USGS streamgages, can provide emergency management personnel and residents with information critical for flood-response activities, such as evacuations and road closures, as well as for postflood recovery efforts.

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USGS2022

Integrating Bayesian networks to forecast sea-level rise impacts on barrier island characteristics and habitat availability

Evaluation of sea-level rise (SLR) impacts on coastal landforms and habitats is a persistent need for informing coastal planning and management, including policy decisions, particularly those that balance human interests and habitat protection throughout the coastal zone. Bayesian networks (BNs) are used to model barrier island change under different SLR scenarios that are relevant to management and policy decisions. BNs utilized here include a shoreline change model and two models of barrier island biogeomorphological evolution at different scales (50 and 5 m). These BNs were then linked to another BN to predict habitat availability for piping plovers ( Charadrius melodus ), a threatened shorebird reliant on beach habitats. We evaluated the performance of the two linked geomorphology BNs and further examined error rates by generating hindcasts of barrier island geomorphology and habitat availability for 2014 conditions. Geomorphology hindcasts revealed that model error declined with a greater number of known inputs, with error rates reaching 55% when multiple outputs were hindcast simultaneously. We also found that, although error in predictions of piping plover nest presence/absence increased when outputs from the geomorphology BNs were used as inputs in the piping plover habitat BN, the maximum error rate for piping plover habitat suitability in the fully-linked BNs was only 30%. Our findings suggest this approach may be useful for guiding scenario-based evaluations where known inputs can be used to constrain variables that produce higher uncertainty for morphological predictions. Overall, the approach demonstrates a way to assimilate data and model structures with uncertainty to produce forecasts to inform coastal planning and management.

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USGS2022

A multiscale approach for monitoring groundwater discharge to headwater streams by the U.S. Geological Survey Next Generation Water Observing System Program—An example from the Neversink Reservoir watershed, New York

Groundwater-stream connectivity across mountain watersheds is critical for supporting streamflow during dry times and keeping streams cool during warm times, yet U.S. Geological Survey (USGS) stream measurements are often sparse in headwaters. Starting in 2019, the USGS Next Generation Water Observing System Program developed a multiscale methods and technology testbed approach to monitoring groundwater discharge to streams in the Neversink Reservoir watershed in the Catskill Mountains of New York. Groundwater discharge dynamics are complex across space and time because of geographic variability, topography, and preferential groundwater flow patterns, and the monitoring of discharge processes necessitates an innovative approach that includes emerging water tracing methods and enhanced local geologic mapping. This fact sheet describes the multiscale monitoring approach applied in the Neversink Reservoir watershed and specifically how the varied data types are complimentary in understanding groundwater-stream connectivity, with elements transferable to other mountain watersheds.

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USGS2022

Decision-making for managing harmful algal blooms

Cyanobacteria are a global water-quality concern because these organisms can develop into harmful blooms that affect ecologic, economic, and public health. U.S. Geological Survey scientists worked with the New York State Office of Parks, Recreation and Historic Preservation and the New York State Department of Environmental Conservation to develop a structured decision-making template for managing cyanobacterial harmful algal blooms. This approach can help natural resource managers make decisions to manage water bodies threatened by harmful algal blooms.

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USGS2022

Glacial geology and hydrogeology of valley-fill aquifers in the Oneonta area, Otsego and Delaware Counties, New York

The glacial geology and hydrogeology of valley-fill aquifers and their surrounding uplands are described within a 112-square-mile area in southern Otsego and northwestern Delaware Counties, New York, centered around the City of Oneonta. The major valleys include those of the Susquehanna River, Otego Creek, Charlotte Creek, and Schenevus Creek. A variety of data were analyzed to provide a broad picture of the glacial deposits, hydrogeologic framework, aquifer occurrence, and water-resource potential in the area. Both valley-fill and bedrock aquifers are used for water supply within the study area. The valley-fill aquifers consist of coarse-grained stratified drift, are mostly limited to the larger valleys, and have well yields that typically are much greater than those obtained from the bedrock aquifers. The bedrock aquifers generally have lower well yields, are the sole source of groundwater in upland areas, and are tapped in valley areas where sediments are very silty or are absent. Through and non-through valleys and their orientations relative to ice flow have resulted in a variety of deglacial environments and deposits, some of which depart from glacial stratigraphy typically observed elsewhere in central New York. In comparison to through valleys with low in-valley divides, the regional thinning of ice over the high bedrock divides of the non-through valleys resulted in the earlier and more widespread stagnation of glacial ice, development of dead-ice sinks, and earlier diversion of meltwater from ice north of the divides. As the main through valley in the study area, the Susquehanna River valley is characterized by multiple inferred ice-margin positions with associated outwash deposition or ice-contact deposits. Throughout the study area, valleys orientated parallel or subparallel to the ice flow facilitated the development of long ice tongues; valleys oriented perpendicular to the ice flow led to little ice-tongue development, but they did facilitate the deposition of the extensive kame moraines that now occupy several-mile-long valley reaches. Lacustrine sediments were deposited in proglacial lakes. These sediments underlie most valleys that were oriented parallel and subparallel to ice flow, but they are largely absent in the Charlotte Creek valley, which was oriented perpendicular to the ice flow and now contains an extensive kame moraine. Beneath these lacustrine deposits, sand and gravel were deposited as subaqueous fans, eskers, and the distal parts of delta (kame) terraces, each with variable silt content. The presence of coarse-grained stratified deposits, their saturated thicknesses, and their recharge potential are the primary controls on aquifer locations in the study area. The most widespread aquifers in the study area consist of sand and gravel and are confined mostly beneath lacustrine deposits. Confined aquifer yields are enhanced by hydraulic connections with unconfined ice-contact deposits along the valley walls, especially where tributary streams cross these deposits and provide additional recharge through streambed infiltration. The Susquehanna River and other large valley creeks provide a potentially large source of recharge to aquifers where groundwater withdrawals from nearby production wells induce infiltration of river water into aquifers. Unconfined aquifers are present where ice-contact deposits extend below the valley floor and are sufficiently saturated. Most surficial outwash deposits in the study area are thinly saturated; thus their water-resource potential is likely to be limited. The upland areas contain very little stratified drift; therefore, characterization was limited to delineating areas of thick till and thin, or absent, till. Recharge of bedrock aquifers is greatest in areas overlain by thin till or where bedrock is exposed at land surface.

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USGS2022

Using microbial source tracking to identify fecal contamination sources in South Oyster Bay on Long Island, New York

The U.S. Geological Survey worked in cooperation with the New York State Department of Environmental Conservation to assess the potential sources of fecal contamination entering South Oyster Bay, a shallow embayment on the southern shore of Long Island, New York. Water samples are routinely collected by the New York State Department of Environmental Conservation in the bay and analyzed for fecal coliform bacteria, an indicator of fecal contamination, to determine the need for closure of shellfish beds for harvest and consumption. Fecal coliform and other bacteria are an indicator of the potential presence of pathogenic (disease-causing) bacteria. However, indicator bacteria alone cannot determine the biological or geographical sources of contamination; therefore, microbial source tracking was implemented to determine various biological sources of contamination. In addition, information such as the location, weather and season, and surrounding land use where a sample was collected help determine the geographical source and conveyance of land-based water to the embayment. Analysis revealed that the most substantial source of fecal contamination to South Oyster Bay was stormwater, particularly during the summer months. The highest frequency of fecal coliform detections in source sites were under wet summer conditions, and the highest fecal coliform concentrations were under wet summer conditions at the Cedar Creek near Bay Place and Unqua Lake Culvert sites (more than 16,000 most probable number per 100 milliliters each). The human-associated Bacteroides marker was the most frequently detected microbial source tracking marker in South Oyster Bay (50 percent positive detections). The human marker was detected at least twice in all surface water source and receptor sites, except for the Massapequa Lake East Culvert source site that did not have any positive human marker detections. Canine contamination was prolific at source sites but was associated with low fecal coliform concentrations in the winter months. All detections of the canine-associated Bacteroides marker were in samples collected during the winter season and were associated with fecal coliform concentrations below the reporting limit, indicating that birds are not a persistent source of fecal coliform to South Oyster Bay. The absence of fecal coliform and human markers in groundwater samples collected throughout the larger study area indicates that water from cesspools or septic tanks do not contribute fecal coliform to the bay. Further, microbial source tracking markers were not detected in the sandy sediment collected at Zachs Bay. Based a classification scheme developed to convey the degree of fecal contamination to stakeholders and resource managers, the Cedar Creek near Bay Place and Unqua Lake Culvert sites were identified as locations that contribute substantial fecal contamination to South Oyster Bay.

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USGS2022

Geohydrology and water quality of the northern and central parts of the Tug Hill glacial aquifer, Jefferson and Oswego Counties, north-central New York

The northern and central parts of the Tug Hill glacial aquifer consist of a 29-mile-long, crescent-shaped, mixture of glaciofluvial, glaciolacustrine, and recent alluvial deposits of predominantly sand and gravel on the western side of the Tug Hill Plateau in Jefferson and Oswego Counties in north-central New York. Approximately 11,400 people are supplied by groundwater that is withdrawn from municipal and nonmunicipal wells in the northern and central parts of the aquifer. In addition, many farms, several industries, and a large New York State fish hatchery also rely on the water from the aquifer. In the early 2000s, anticipated developmental pressures from potential new industries (including a proposed water-bottling plant in the central part of the Tug Hill glacial aquifer) and expansion of the Fort Drum military base north of Watertown (with the projected increase in population extending into the northern part of the aquifer) prompted the Tug Hill Commission, local municipal officials, and representatives from the New York State Department of Environmental Conservation to initiate a geohydrologic study with the U.S. Geological Survey. The information from this study is intended to help the state, counties, and local communities make sound policy decisions about their use of this large groundwater resource. The northern part of the Tug Hill glacial aquifer is a combination of glaciofluvial outwash and alluvial sand and gravel in the Sandy Creek Valley northeast of Adams, New York, and mostly glaciolacustrine beach and deltaic sand or sand and gravel north and south of the village of Adams. The southern and eastern areas of the central part of the aquifer are composed mostly of glaciofluvial sediments such as kames, kame moraines, and kame terraces, whereas most of the western areas of the central part are composed mostly of glaciolacustrine sediments such as deltaic sand and beach sand and gravel. The northern and central parts of the aquifer are unconfined. Recharge to the northern and central parts of the aquifer is from three main sources: (1) precipitation that falls directly onto the aquifer; (2) unchannelized runoff (overland flow) and groundwater from till and bedrock in the Tug Hill Plateau that seeps into the eastern side of the aquifer; and (3) streams that drain the Tug Hill Plateau and flow across and lose water to the aquifer. Groundwater discharges to springs, seeps, headwaters of streams, and wetlands in the middle area of the central part of the aquifer and along the entire western boundary of the northern and central parts of the aquifer; pumping wells; artificial ditches; and deeply incised streams in the northern and central parts of the aquifer. The groundwater discharge to such streams is critical in supporting the salmonid fishery in the central part of the aquifer. Groundwater levels were measured on July 17, 2014, at 22 wells throughout the northern and central parts of the aquifer. Water-table contours were drawn on the basis of the measured July 2014 water levels, historical water-level data, and surface-water levels where surface water in the channels was expected to be hydraulically connected to the groundwater system. The water table generally slopes from east to west throughout the northern and central parts of the aquifer; this slope also indicates that the direction of groundwater flow is generally from east to west. Water-quality samples were collected from 23 stream sites during base-flow conditions, and groundwater-quality and other types of environmental samples were collected from 20 wells in the northern and central parts of the Tug Hill glacial aquifer. The results of the sampling indicate that surface water and groundwater are generally of good quality. Comparison of the median concentration values of major ions in groundwater samples indicated that hardness in the northern part of the aquifer was about twice as great, and concentrations of calcium and sodium were more than three times as great, as in the central part of the aquifer. As was the case with surface water, the much greater median concentrations in groundwater of calcium, hardness, and alkalinity in the northern part of the aquifer are due to the dissolution of limestone that underlies most of that area and to the high-carbonate content of the clasts in the sand and gravel. There was little to no difference among the median values for bromide, fluoride, silica, and iron in the two parts of the aquifer. Concentrations of most other major ions were slightly greater in the northern part than in the central part of the Tug Hill glacial aquifer, except for magnesium, whose concentration was greater in the central part. Median concentrations of nutrients were generally greatest in surface water and groundwater in the northern part of the aquifer.

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USGS2022

Assessment of fecal contamination sources to Alley Creek, Queens County, New York, August 2020–June 2021

Alley Creek, a tributary to Little Neck Bay in Queens County, New York, has been designated by the New York State Department of Environmental Conservation as impaired (Class I) for fecal coliform because of pollution from combined sewer overflow, including stormwater runoff. The U.S. Geological Survey, in cooperation with the New York City Department of Environmental Protection, conducted a 1-year study from August 2020 to June 2021 using microbial source tracking (MST) methods to assess potential host sources of fecal contamination (for example, human, canine, and waterfowl) from the following: three outfall sites, TI–025, TI–008, and TI–024; an artesian well (Q277) adjacent to Alley Creek; and natural waters within the Alley Creek watershed and Little Neck Bay. In addition to analyzing for MST markers, field measurements such as water temperature and specific conductance, samples for total suspended solids, and fecal indicator bacteria (FIB; enterococci and fecal coliform) were collected. Pharmaceutical compounds were also collected for analysis, and the results of sampling were compared spatially and temporally to help support management decisions related to mitigation of fecal sources to Alley Creek. Factors that could affect concentrations, including tidal conditions, seasonality, and weather conditions, also were assessed. A sediment resuspension laboratory experiment was designed to replicate tidal activity in Alley Creek using sediment collected in the sewers and on the shoreline, as well as water collected from Oakland Lake. These sediment samples were assessed to understand the relation between sediment resuspension and FIB in the water column. The human MST markers used for this study, Bacteroides HF183/BacR287, and crAssphage CPQ_056 and CPQ_064, were detected in most samples (27 of 28) collected at the three outfall sites along Alley Creek, whereas the canine marker BacCan was less prevalent (20 of 28 samples) but exhibited a pattern of relative concentrations similar to the human markers. The waterfowl MST GFD marker was detected in 7 of 28 samples collected at the three outfall sites. Human MST markers were not detected at Oakland Lake (which drains through a combined sewer line to Alley Creek at TI–008), indicating minimal or nonexistent influence of sewage contamination in the lake. Groundwater samples collected from Q277 did not contain any MST markers, and concentrations of fecal coliform were less than 10 colony forming units per 100 milliliters. Although FIB did not correlate well with total suspended solids for individual sample sets, samples collected following precipitation and high-turbidity events were typically found to have higher concentrations of FIB than dry-weather samples. Results from the pharmaceutical compounds analysis provided additional evidence for determining known and suspected human sources when coupled with MST markers. Together, the MST, pharmaceutical, and FIB data generated by this study, along with supplementary data such as locations of point sources, locations of wildlife populations, and tidal exchange data, may provide reliable information on source identification and transport mechanisms of fecal contamination to Alley Creek.

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USGS2022

Geologic framework, anthropogenic impacts, and hydrodynamics contribute to variable sediment availability and shoreface morphology at the Rockaway Peninsula, NY

Recent field and modeling studies have shown that barrier island resiliency is sensitive to sediment fluxes from the shoreface, making it important to evaluate how shoreface sediment availability varies in coastal systems. To do this, we assessed shoreface geology and morphology along the Rockaway Peninsula, NY, USA. We find that spatial variability in shoreface volume is influenced by sediment accommodation above the Holocene-Pleistocene (H-P) contact, historical barrier island evolution, and natural and engineered morphologic features, suggesting that simply identifying the H-P boundary may not be adequate for defining the shoreface reservoir. Further, sediment flux from the lower shoreface to the beach may be reduced by geologically limited cross-shore sediment distribution and shoreface steepening mediated by human modifications to the shoreline. Finally, the geologic limit of the shoreface is often shallower than a wave-based estimate of shoreface extent, implying that the geologic shoreface extent at our study site can be mobilized over short time scales (years-decades) and that the wave-based shoreface extent may be inaccurate when estimating shoreline response to sea-level rise. Our results demonstrate that the combination of hydrodynamics, humans, and geology on shoreface sediment fluxes impact how barrier islands respond to future changes in sediment supply and climate.

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USGS2022

Characterization of the bathymetry, hydrodynamics, water quality, infrastructure, and channel condition of the Old Erie Canal from DeWitt to its junction with the current Erie Canal in Verona, near Rome, New York, 2018–19

The Old Erie Canal has undergone sedimentation and aquatic growth that have restricted flow and diminished the aesthetic quality of the canal during the nearly 200 years since its construction. During 2018–2019, the U.S. Geological Survey (USGS) in cooperation with the Madison County Planning Department and the New York State Canal Corporation conducted a study of the Old Erie Canal between the Town of DeWitt, New York, and its junction with the current Erie Canal of the New York State Canal System near Rome, N.Y. The study comprised bathymetric, velocity, and water-quality surveys and documentation of the canal infrastructure. The USGS established benchmarks and staff gages along the 30.8 miles of the canal study area to reference the water-surface level in the canal to the North American Vertical Datum of 1988 (NAVD 88). Bathymetric survey results indicated that during the time of the survey, the canal depths ranged from 1.26 feet (ft) to 7.33 ft between the Butternut and Durhamville aqueducts (with a mean depth of 3.52 ft). Shallow depths are located throughout the canal, but the section north of the Durhamville aqueduct was the shallowest, with depths ranging from 0.68 ft to 2.44 ft (and a mean depth of 1.36 ft). The reach-averaged water velocity was 0.28 feet per second. The system generally flows west to east from the Butternut aqueduct to the entrance to the Erie Canal. Water-quality data (dissolved oxygen, water temperature, specific conductance, pH, and turbidity) were collected concurrently with the bathymetric survey (spring 2018) to characterize changes in water quality along the length of the canal. Specific-conductance values measured upstream from the hamlet of Kirkville, Manlius, N.Y. may reflect road salts being flushed into the canal through the Butternut and Limestone feeder system (designed to divert water from nearby creeks to supply water for the Old Erie Canal) from recent stormwater runoff. Increases in pH in the downstream direction are possibly caused by increasing amounts of aquatic vegetation. During the time of the survey, turbidity was highest near inflows from the canal feeder system and tributary inputs which were elevated by stormwater runoff that transported sediment into the canal. The canal infrastructure was documented to provide a baseline assessment. The feeder system, designed to bring water into the canal, does not deliver flow when the creeks supplying water to those feeders are at base flow, but does bring water into the system when flows in the feeder creeks are elevated. A recent report provides an example of repair work completed on the Chittenango feeder to improve flow through the feeder into the canal (Welch and Madison County Planning Department, 1996). Two non-regulated tributaries, Meadow Brook and Pools Brook, consistently delivered flow to the canal. Outfalls where canal water discharges into nearby creeks were sealed in the Butternut and Limestone aqueducts. Outfalls in the Chittenango, Cowaselon, and Durhamville aqueducts were found with flashboards installed at an elevation that allows water to be discharged from the canal. These structures are designed to accept additional flashboards to raise the canal water surface with the potential to convey flow farther down the system. The general condition of the channel was open and navigable between Butternut aqueduct and Chittenago aqueduct. On the segment of the canal east of the Chittenango aqueduct, an increasing number of downed trees and tangled wads of vegetation affected flow and made navigation by boat difficult to the Durhamville aqueduct. North of the Durhamville aqueduct, numerous downed trees and an increased density of aquatic vegetation limited navigation by boat and reduced the flow rate.

New York↗

USGS2022

Watershed-scale liming reveals the short- and long-term effects of pH on the forest soil microbiome and carbon cycling

Soil microbial community composition routinely correlates with pH, reflecting both direct pH effects on microbial physiology and long-term biogeochemical feedbacks. We used two watershed-scale liming experiments to identify short- (2 years) and long-term (25 years) changes in the structure and function of bacterial and fungal communities in organic horizons (O e and O a ) of acid forest soils. Liming increased soil pH, extractable calcium, and soil carbon stocks, reduced biomass-specific respiration, and caused major changes in the soil microbiome in the short and long term. More taxa responded to liming in the short term (70%) than in the long term (30%), with most showing consistent directional responses at both sites. The ratio of change in relative abundance between limed and reference sites was twofold higher at the long than the short-term site, indicating that the effects of liming grew over time. Liming impacts were most pronounced in fungi, as steep declines of dominant ectomycorrhizal fungi ( Cenococcum and Russula ) occurred at both sites. Liming favoured neutrophilic bacteria over acidophilic populations according to estimated environmental pH optima. Collectively, these results demonstrate that a liming-induced change of one pH unit has an immediate and persistent effect on the structure and function of microbial communities in acid forest soils. The corresponding suppression of respiration indicates that anthropogenic alterations of soil pH, as driven by acid deposition or liming, can affect forest floor C stocks due to pH-driven shifts in community structure.

New York↗

USGS2022

A structured decision-making framework for managing cyanobacterial harmful algal blooms in New York State parks

Cyanobacteria are increasingly a global water-quality concern because of the potential for these organisms to develop into potentially harmful blooms that affect ecological, economic, and public health. Cyanobacterial harmful algal blooms (CyanoHABs) can lead to a decrease in water quality and affect many of the recreational and ecological benefits of parks that include lakes. The New York State Office of Parks, Recreation and Historic Preservation (OPRHP) is a State agency within the New York State Executive Department charged with the operation of State parks and historic sites. Many New York State parks include lakes or other freshwater bodies, which can be susceptible to CyanoHABs. The OPRHP faces difficult decisions regarding prevention of and response to CyanoHABs. The U.S. Geological Survey partnered with the OPRHP and the New York State Department of Environmental Conservation to develop a structured decision-making template for managing CyanoHABs in OPRHP parks. Two parks, Moreau Lake State Park and Rockland Lake State Park, served as case studies to motivate and test the template. This report describes how the principles of structured decision making can be used to navigate the challenges associated with managing CyanoHABs in OPRHP parks. Management objectives and strategies for CyanoHABs in parks are described, strategies to evaluate consequences and manage tradeoffs are discussed, and potential challenges to the implementation of preferred alternatives are considered. General guidance is provided so the OPRHP can undertake the structured decision-making process for CyanoHABs in any of its parks. In addition, this report represents the first effort to create a strategy for applying decision analysis tools to the complex natural resource challenge of CyanoHAB mitigation and management. The case studies and template are intended to serve as an example that natural resource managers faced with CyanoHABs challenges can use to inform their decision-making processes.

New York↗