Geology topics

Research about Lower Missouri River

Source-linked reports with geographic coverage including Lower Missouri River.

18 recordsLinked to original sources

USGS2023

Performance evaluation of a channel rehabilitation project on the Lower Missouri River and implications for the dispersal of larval pallid sturgeon

In the Lower Missouri River, extensive channel modifications have altered hydraulic and morphologic conditions and reduced the river's ecological integrity. One species that has been adversely affected by these changes is the pallid sturgeon ( Scaphirhynchus albus ). Mainstem dams on the Missouri River restrict the upstream migration of adults and limit the downstream dispersal of larvae. Channelization to facilitate commercial barge traffic has also simplified the river. The self-dredging navigation channel is a highly efficient conduit for transporting sand, which has resulted in diminished rearing habitat along the lower river. Recently, a series of experimental projects was implemented to reengineer selected bends of the Lower Missouri River with the goal of increasing the interception and retention of passively drifting age-0 sturgeon into habitats more conducive to rearing. Here, we evaluate the hydraulic performance of one of these rehabilitation projects to gain insight on the implications of these interventions for age-0 pallid sturgeon dispersal. We conducted a dye-trace experiment and complementary hydraulic and particle-tracking modeling to examine the spatial and temporal patterns of passive dispersal in and around the rehabilitated study reach. Results from both the dye-trace experiment and particle-tracking model highlight the presence of several interception pathways from the navigation channel into more suitable rearing habitat on channel margins. Moreover, our results indicate that residence times within the rearing habitat are increased in comparison to the main channel. Although we cannot provide biological evaluation at this time to assess whether the rehabilitated study bend intercepts passively drifting age-0 pallid sturgeon, our analysis shows that hydraulic conditions within the rehabilitated bend would favor interception and retention of passively drifting particles (or, presumably, larvae) from the navigation channel and into slower moving, shallow-water habitat. Moreover, our particle-tracking model provides a new capability to explore important biological transport processes across a range of flows, organisms, and river environments.

Lower Missouri River↗

USGS2022

Factors affecting interannual variation in diet and body lipid content of age-0 Scaphirhynchus sturgeon in the lower Missouri River, USA

The ability of young fish to find and consume food during early life history is an important factor affecting survival and recruitment. While dietary assessments for age-0 Scaphirhynchus sturgeon (shovelnose sturgeon and pallid sturgeon) in the Missouri River, USA have received increased attention over the last 15 years, there is currently limited information available to evaluate long-term trends in prey consumption and body condition. To better understand interannual factors during early-life history, we examined foraging and body condition of age-0 (<12.0 cm) Scaphirhynchus in relation to discharge and the availability of hypothesized foraging and food-producing habitats at a single reach (Lexington) of the Missouri River over a span of five years (2014–2018). Relatively high discharge in 2015 led to concomitant maxima in foraging and lipid levels for age-0 sturgeon. However, lower water levels in 2014 did not see declines in lipid content as would be expected given the low level of foraging observed that year. Additionally, the availability of hypothesized foraging and food-producing habitats had little effect on age-0 sturgeon prey consumption and condition in the Lexington Reach. Our results suggest that other factors in addition to river discharge may affect age-0 sturgeon foraging and condition and more research focused on understanding the flow-habitat relationships would be critical.

Missouri↗

USGS2018

Isotope niche dimension and trophic overlap between bigheaded carps and native filter-feeding fish in the lower Missouri River, USA

Stable carbon and nitrogen isotope values (δ 13 C and δ 15 N) were used to evaluate trophic niche overlap between two filter-feeding fishes (known together as bigheaded carp) native to China, silver carp ( Hypophthalmichthys molitrix ) and bighead carp ( Hypophthalmichthys nobilis ), and three native filter-feeding fish including bigmouth buffalo ( Ictiobus cyprinellus ), gizzard shad ( Dorosoma cepedianum ) and paddlefish ( Polyodon spathula ) in the lower Missouri River, USA, using the Bayesian Stable Isotope in R statistics. Results indicate that except for bigmouth buffalo, all species displayed similar trophic niche size and trophic diversity. Bigmouth buffalo occupied a small trophic niche and had the greatest trophic overlap with silver carp (93.6%) and bighead carp (94.1%) followed by gizzard shad (91.0%). Paddlefish had a trophic niche which relied on some resources different from those used by other species, and therefore had the lowest trophic overlap with bigheaded carp and other two native fish. The trophic overlap by bigheaded carp onto native fish was typically stronger than the reverse effects from native fish. Average niche overlap between silver carp and native species was as high as 71%, greater than niche overlap between bighead carp and native fish (64%). Our findings indicate that bigheaded carps are a potential threat to a diverse and stable native fish community.

Lower Missouri River↗

USGS2017

Quantifying habitat benefits of channel reconfigurations on a highly regulated river system, Lower Missouri River, USA

We present a quantitative analysis of habitat availability in a highly regulated lowland river, comparing a restored reach with two reference reaches: an un-restored, channelized reach, and a least-altered reach. We evaluate the effects of channel modifications in terms of distributions of depth and velocity as well as distributions and availability of habitats thought to be supportive of an endangered fish, the pallid sturgeon ( Scaphirhynchus albus ). It has been hypothesized that hydraulic conditions that support food production and foraging may limit growth and survival of juvenile pallid sturgeon. To evaluate conditions that support these habitats, we constructed two-dimensional hydrodynamic models for the three study reaches, two located in the Lower Missouri River (channelized and restored reaches) and one in the Yellowstone River (least-altered reach). Comparability among the reaches was improved by scaling by bankfull discharge and bankfull channel area. The analysis shows that construction of side-channel chutes and increased floodplain connectivity increase the availability of foraging habitat, resulting in a system that is more similar to the reference reach on the Yellowstone River. The availability of food-producing habitat is low in all reaches at flows less than bankfull, but the two reaches in the Lower Missouri River – channelized and restored – display a threshold-like response as flows overtop channel banks, reflecting the persistent effects of channelization on hydraulics in the main channel. These high lateral gradients result in punctuated ecological events corresponding to flows in excess of bankfull discharge. This threshold effect in the restored reach remains distinct from that of the least-altered reference reach, where hydraulic changes are less abrupt and overbank flows more gradually inundate the adjacent floodplain. The habitat curves observed in the reference reach on the Yellowstone River may not be attainable within the channelized system on the Missouri River, but the documented hydraulic patterns can be used to inform ongoing channel modifications. Although scaling to bankfull dimensions and discharges provides a basis for comparing the three reaches, implementation of the reference reach concept was complicated by differences in flow-frequency distributions among sites. In particular, habitat availability in the least-altered Yellowstone River reach is affected by increased frequency of low-flow events (less than 0.5 times bankfull flow) and moderately high-flow events (greater than 1.5 times bankfull flow) compared to downstream reaches on the Lower Missouri River.

Lower Missouri River↗

USGS2017

A fully-stochasticized, age-structured population model for population viability analysis of fish: Lower Missouri River endangered pallid sturgeon example

We develop a fully-stochasticized, age-structured population model suitable for population viability analysis (PVA) of fish and demonstrate its use with the endangered pallid sturgeon ( Scaphirhynchus albus ) of the Lower Missouri River as an example. The model incorporates three levels of variance: parameter variance (uncertainty about the value of a parameter itself) applied at the iteration level, temporal variance (uncertainty caused by random environmental fluctuations over time) applied at the time-step level, and implicit individual variance (uncertainty caused by differences between individuals) applied within the time-step level. We found that population dynamics were most sensitive to survival rates, particularly age-2+ survival, and to fecundity-at-length. The inclusion of variance (unpartitioned or partitioned), stocking, or both generally decreased the influence of individual parameters on population growth rate. The partitioning of variance into parameter and temporal components had a strong influence on the importance of individual parameters, uncertainty of model predictions, and quasiextinction risk (i.e., pallid sturgeon population size falling below 50 age-1+ individuals). Our findings show that appropriately applying variance in PVA is important when evaluating the relative importance of parameters, and reinforce the need for better and more precise estimates of crucial life-history parameters for pallid sturgeon.

Lower Missouri River↗

USGS2016

Measurement of bedform migration rates on the Lower Missouri River in Missouri, USA using repeat measurements with a multibeam echosounder

High-resolution repeat multibeam echosounder measurements on the Lower Missouri River near Boonville, Missouri, USA show bedform movement and sand storage patterns over daily to seasonal time scales and a range of discharges. Higher flows are frequently, but not always, associated with larger bedforms, higher bedform movement rates, and higher bedload transport rates. Measurements of the temporal and spatial variability in sand dune sizes, transport rates, and sand storage across the river channel have increased understanding of the dynamics of habitats utilized by benthic organisms over multiple life stages and daily to seasonal time scales.

Missouri↗

USGS2015

The role of floodplain restoration in mitigating flood risk, Lower Missouri River, USA

Recent extreme floods on the Lower Missouri River have reinvigorated public policy debate about the potential role of floodplain restoration in decreasing costs of floods and possibly increasing other ecosystem service benefits. The first step to addressing the benefits of floodplain restoration is to understand the interactions of flow, floodplain morphology, and land cover that together determine the biophysical capacity of the floodplain. In this article we address interactions between ecological restoration of floodplains and flood-risk reduction at 3 scales. At the scale of the Lower Missouri River corridor (1300 km) floodplain elevation datasets and flow models provide first-order calculations of the potential for Missouri River floodplains to store floods of varying magnitude and duration. At this same scale assessment of floodplain sand deposition from the 2011 Missouri River flood indicates the magnitude of flood damage that could potentially be limited by floodplain restoration. At the segment scale (85 km), 1-dimensional hydraulic modeling predicts substantial stage reductions with increasing area of floodplain restoration; mean stage reductions range from 0.12 to 0.66 m. This analysis also indicates that channel widening may contribute substantially to stage reductions as part of a comprehensive strategy to restore floodplain and channel habitats. Unsteady 1-dimensional flow modeling of restoration scenarios at this scale indicates that attenuation of peak discharges of an observed hydrograph from May 2007, of similar magnitude to a 10 % annual exceedance probability flood, would be minimal, ranging from 0.04 % (with 16 % floodplain restoration) to 0.13 % (with 100 % restoration). At the reach scale (15–20 km) 2-dimensional hydraulic models of alternative levee setbacks and floodplain roughness indicate complex processes and patterns of flooding including substantial variation in stage reductions across floodplains depending on topographic complexity and hydraulic roughness. Detailed flow patterns captured in the 2-dimensional model indicate that most floodplain storage occurs on the rising limb of the flood as water flows into floodplain bottoms from downstream; at a later time during the rising limb this pattern is reversed and the entire bottom conveys discharge down the valley. These results indicate that flood-risk reduction by attenuation is likely to be small on a large river like the Missouri and design strategies to optimize attenuation and ecological restoration should focus on frequent floods (20–50 % annual exceedance probability). Local stage reductions are a more certain benefit of floodplain restoration but local effects are highly dependent on magnitude of flood discharge and how floodplain vegetation communities contribute to hydraulic roughness. The most certain flood risk reduction benefit of floodplain restoration is avoidance of flood damages to crops and infrastructure.

Iowa, Kansas, Minnesota, Missouri, Nebraska, South↗

USGS2014

A velocimetric survey of the Lower Missouri River from river mile 492.38 to 290.20, July-October 2011 and July 2012

Velocimetric surveys were made by the U.S. Geological Survey in 2011 and 2012 to provide data for the U.S. Army Corps of Engineers’ ongoing study of bed degradation in the Lower Missouri River. Using Acoustic Doppler Current Profile technology, velocity data were collected at 87 river miles along the Lower Missouri River from Rulo, Nebraska to Waverly, Missouri, from July to October 2011 and in July 2012, for a total of 118 velocimetric surveys. Multiple-repeat velocimetric surveys were done eight times at three river miles from July to October 2011. Synoptic velocimetric surveys spanning 2–4 days were done twice at ten river miles, once in July 2011 and once in October 2011. Additional synoptic velocimetric surveys were done at proximal river miles in October 2011 and July 2012. Main-channel, near-bed, near-bank, and whole-river velocities were extracted from the Acoustic Doppler Current Profile data using AdMap and compiled as an average of reciprocal pairs for each survey. In addition, the mean velocity computed by the Winriver II software for each survey was integrated with the extracted data. Multiple-repeat velocimetric surveys in the vicinity of Kansas City and Waverly, Missouri, in 2011 indicated that main-channel, near-bed, near-bank, and whole-river velocities generally declined with respect to declining daily mean discharges at the St. Joseph and Waverly, Missouri streamgaging stations. Statistical analysis of the four extracted velocity types indicated that multiple-repeat velocimetric surveys were strongly correlated with daily mean discharges at nearby streamgaging stations (coefficient of determination greater than 0.75). Main-channel velocity exceeded whole-river velocity by an average of 25 percent at river mile 357.70, 22 percent at river mile 357.09, and 6.8 percent at river mile 290.20 for all velocimetric surveys at each location, respectively. Mainchannel, near-bed, near-bank, and whole-river velocities declined about 48 percent from July to October 2011 at the Kansas City sites and about 38 percent at the Waverly site. Winriver II mean velocity from multiple-repeat velocimetric surveys indicated that the relation between all velocities was inconsistent from July to October 2011. Percent changes in channel width from July to October 2011 were typically less than concurrent changes in channel area and instantaneous discharge. The combined synoptic and multiple-repeat survey data for July 2011 did not indicate a clear longitudinal trend of velocity as instantaneous discharge increased downstream. Main-channel velocity exceeded whole-river velocity by an average of 22 percent during July 2011 and in some cases by more than 40 percent (river miles 452.50 and 308.80). Evaluation of 10 pairs of synoptic and synoptic-repeat velocimetric surveys with multiple-repeat velocimetric surveys from July to October 2011 indicated that all velocity types and channel width decreased by about one-third. Channel area and instantaneous discharge decreased by more than 50 percent from July to October 2011 and the percent by which main-channel velocity exceeded whole-river velocity decreased slightly from 22 percent in July to 19 percent. Comparing high (July 2011) to low (October 2011) discharge, where the channel width and area expanded by a factor of nearly 3.0 or more at high discharge (river miles 492.38 to 452.50), main-channel, near-bed, near-bank, and whole-river velocities increased by factors in the range of 1.1 to 1.7 and Winriver II mean velocity decreased. At the Kansas City river miles, all velocity types and channel areas nearly doubled at high discharge and channel widths remained similar to those at low discharge. Multiple-repeat and synoptic velocimetric surveys evaluated in October 2011 indicated that main-channel, near-bed, nearbank, and whole-river velocities generally increased downstream from river miles 424.20 to 404.70 and then decreased, until river mile 290.20, where they increased slightly. Of the July 2012 synoptic velocimetric surveys, velocities near St. Joseph, Missouri, indicated no longitudinal trends in the main-channel, near-bed, near-bank, and whole-river velocities. The Kansas City and Waverly synoptic velocimetric surveys indicated a general decrease in these velocities proceeding downstream. For all 2012 surveys, near-bed velocity was closest in magnitude to Winriver II mean velocity and near-bed and whole-river velocities decreased with increasing channel area. For the entire study, variations in near-bank velocity may have been due to the influence of channel structures and their diversion of higher velocities away from the channel edges.

Missouri;Nebraska↗

USGS2013

Ecological prediction with nonlinear multivariate time-frequency functional data models

Time-frequency analysis has become a fundamental component of many scientific inquiries. Due to improvements in technology, the amount of high-frequency signals that are collected for ecological and other scientific processes is increasing at a dramatic rate. In order to facilitate the use of these data in ecological prediction, we introduce a class of nonlinear multivariate time-frequency functional models that can identify important features of each signal as well as the interaction of signals corresponding to the response variable of interest. Our methodology is of independent interest and utilizes stochastic search variable selection to improve model selection and performs model averaging to enhance prediction. We illustrate the effectiveness of our approach through simulation and by application to predicting spawning success of shovelnose sturgeon in the Lower Missouri River.

Lower Missouri River↗

USGS2012

Ecological requirements for pallid sturgeon reproduction and recruitment in the Lower Missouri River: Annual report 2010

The Comprehensive Sturgeon Research Project is a multiyear, multiagency collaborative research framework developed to provide information to support pallid sturgeon recovery and Missouri River management decisions. The project strategy integrates field and laboratory studies of sturgeon reproductive ecology, early life history, habitat requirements, and physiology. The project scope of work is developed annually with cooperating research partners and in collaboration with the U.S. Army Corps of Engineers, Missouri River Recovery—Integrated Science Program. The research consists of several interdependent and complementary tasks that engage multiple disciplines. The research tasks in the 2010 scope of work primarily address spawning as a probable factor limiting pallid sturgeon survival and recovery, although limited pilot studies also have been initiated to examine the requirements of early life stages. The research is designed to inform management decisions affecting channel re-engineering, flow modification, and pallid sturgeon population augmentation on the Missouri River, and throughout the range of the species. Research and progress made through this project are reported to the U.S. Army Corps of Engineers annually. This annual report details the research effort and progress made by the Comprehensive Sturgeon Research Project during 2010.

South Dakota;Nebraska;Iowa;Missouri↗

USGS2011

An evaluation of the relative quality of dike pools for benthic macroinvertebrates in the Lower Missouri River, USA

A habitat-based aquatic macroinvertebrate study was initiated in the Lower Missouri River to evaluate relative quality and biological condition of dike pool habitats. Water-quality and sediment-quality parameters and macroinvertebrate assemblage structure were measured from depositional substrates at 18 sites. Sediment porewater was analysed for ammonia, sulphide, pH and oxidation-reduction potential. Whole sediments were analysed for particle-size distribution, organic carbon and contaminants. Field water-quality parameters were measured at subsurface and at the sediment-water interface. Pool area adjacent and downstream from each dike was estimated from aerial photography. Macroinvertebrate biotic condition scores were determined by integrating the following indicator response metrics: % of Ephemeroptera (mayflies), % of Oligochaeta worms, Shannon Diversity Index and total taxa richness. Regression models were developed for predicting macroinvertebrate scores based on individual water-quality and sediment-quality variables and a water/sediment-quality score that integrated all variables. Macroinvertebrate scores generated significant determination coefficients with dike pool area ( R 2 =0.56), oxidation–reduction potential ( R 2 =0.81) and water/sediment-quality score ( R 2 =0.71). Dissolved oxygen saturation, oxidation-reduction potential and total ammonia in sediment porewater were most important in explaining variation in macroinvertebrate scores. The best two-variable regression models included dike pool size + the water/sediment-quality score ( R 2 =0.84) and dike pool size + oxidation-reduction potential ( R 2 =0.93). Results indicate that dike pool size and chemistry of sediments and overlying water can be used to evaluate dike pool quality and identify environmental conditions necessary for optimizing diversity and productivity of important aquatic macroinvertebrates. A combination of these variables could be utilized for measuring the success of habitat enhancement activities currently being implemented in this system.

Iowa;Nebraska;Missouri;Kansas↗

USGS2011

Hydrologic and geomorphic considerations in restoration of river-floodplain connectivity in a highly altered river system, Lower Missouri River, USA

Planning for restoration of river-floodplain systems requires understanding how often and how much of a floodplain may be inundated, and how likely the floodplain is to retain the water once flooded. These factors depend fundamentally on hydrology and geomorphology of the channel and floodplain. We discuss application of an index of river-floodplain connectivity, the Land Capability Potential Index (LCPI), to regional-scale restoration planning along 600 km of the Lower Missouri River. The LCPI integrates modeled water-surface elevations, floodplain topography, and soils to index relative wetness of floodplain patches. Geomorphic adjustment of the Lower Missouri River to impoundment and channel engineering has altered the natural relations among hydrology, geomorphology, and floodplain soils, and has resulted in a regional upstream to downstream gradient in connectivity potential. As a result, flow-regime management is limited in its capacity to restore floodplain ecosystems. The LCPI provides a tool for identifying and mapping floodplain restoration potential, accounting for the geomorphic adjustment. Using simple criteria, we illustrate the utility of LCPI-like approaches in regional planning for restoration of plains cottonwood ( Populus deltoides ) communities, hydrologically connected floodplain wetlands, and seasonal floodplain wetlands.

Lower Missouri River↗

USGS2011

Discrete choice modeling of shovelnose sturgeon habitat selection in the Lower Missouri River

Substantive changes to physical habitat in the Lower Missouri River, resulting from intensive management, have been implicated in the decline of pallid ( Scaphirhynchus albus ) and shovelnose ( S. platorynchus ) sturgeon. To aid in habitat rehabilitation efforts, we evaluated habitat selection of gravid, female shovelnose sturgeon during the spawning season in two sections (lower and upper) of the Lower Missouri River in 2005 and in the upper section in 2007. We fit discrete choice models within an information theoretic framework to identify selection of means and variability in three components of physical habitat. Characterizing habitat within divisions around fish better explained selection than habitat values at the fish locations. In general, female shovelnose sturgeon were negatively associated with mean velocity between them and the bank and positively associated with variability in surrounding depths. For example, in the upper section in 2005, a 0.5 m s −1 decrease in velocity within 10 m in the bank direction increased the relative probability of selection 70%. In the upper section fish also selected sites with surrounding structure in depth (e.g., change in relief). Differences in models between sections and years, which are reinforced by validation rates, suggest that changes in habitat due to geomorphology, hydrology, and their interactions over time need to be addressed when evaluating habitat selection. Because of the importance of variability in surrounding depths, these results support an emphasis on restoring channel complexity as an objective of habitat restoration for shovelnose sturgeon in the Lower Missouri River.

Kansas, Missouri, Nebraska, South Dakota↗

USGS2011

Characterization of environmental cues for initiation of reproductive cycling and spawning in shovelnose sturgeon Scaphirhynchus platorynchus in the Lower Missouri River, USA

We presume that the shovelnose sturgeon (Scaphirhynchus platorynchus) has evolved to spawn in the springtime when environmental conditions are at some optimum, but this state has not yet been defined. In this study physiological readiness to spawn in shovelnose sturgeon was examined to define more closely when spawning could occur and thus identify and evaluate prevailing environmental conditions that could cue spawning during that period. Reproductive assessments of Lower Missouri River shovelnose during 4 years (2005-2008) and at two locations (Gavins Point Dam, South Dakota and Boonville, Missouri) were used to identify shovelnose sturgeon spawning periods. Initiation of the spawning period, as defined by the presence of reproductively ready fish, was a highly predictable yearly event and extended over several weeks at each reach. The spawning period occurred earlier in the lower reach than in the upper reach and environmental conditions during the periods varied between locations and among years. Shovelnose sturgeon collected during the presumed spawning periods were at varying degrees of readiness to spawn as indicated by oocyte polarization index and blood reproductive hormones. Evaluation of the influence of environmental factors on readiness to spawn using stepwise multiple regression analysis indicated photoperiod followed by temperature were the best candidate variables overall to explain the trend. However, within geographically distinct populations gravid females are not all reproductively synchronized. Assuming that this apparent asynchrony in readiness is normal and not an artifact of the disturbed Missouri River system, we infer that individual sturgeon can persist in a reproductively ready state until conditions appropriate for spawning occur. Taken together, our results lead us to hypothesize that gravid females early in the reproductive cycle (post-vitellogenesis) respond to day length, a reliable annual cue, become increasingly more ready to spawn in response to temperature, and that another set of cues, short-term and specific for localized environmental conditions or events, serve to signal ovulation and release of gametes.

Lower Missouri River↗

USGS2008

Design of a naturalized flow regime—An example from the Lower Missouri River, USA

group of river managers, stakeholders, and scientists met during summer 2005 to design a more naturalized flow regime for the Lower Missouri River (LMOR). The objective was to comply with requirements under the U.S. Endangered Species Act to support reproduction and survival of threatened and endangered species, with emphasis on the endangered pallid sturgeon ( Scaphirhynchus albus ), while minimizing negative effects to existing social and economic benefits of prevailing river management. Specific hydrograph requirements for pallid sturgeon reproduction are unknown, hence much of the design process was based on features of the natural flow regime. Environmental flow components (EFCs) extracted from the reference natural flow regime were used to design and assess performance of alternative flow regimes. The design process incorporated a primary stage in which conceptual hydrographs were developed and assessed for their general ecological and social-economic performance. The second stage accounted for hydroclimatic variation by coding the conceptual hydrographs into reservoir release rules, adding constraints for downstream flooding and low-storage precludes, and running the rules through 100 years of hydroclimatic simulation. The output flow regimes were then evaluated for presumed ecological benefits based on how closely they resembled EFCs in the reference natural flow regime. Flow regimes also were assessed for social-economic cost indicators, including days of flooding of low-lying agricultural land, days over flood stage, and storage levels in system reservoirs. Our experience with flow-regime design on the LMOR underscored the lack of confidence the stakeholders place in the value of the natural flow regime as a measure of ecosystem benefit in the absence of fundamental scientific documentation. Stakeholders desired proof of ecological benefits commensurate with the certainty of economic losses. We also gained insight into the processes of integrating science into a collaborative management exercise. Although the 2005 collaborative effort failed to reach a consensus among stakeholders on a naturalized flow regime, the process was successful in pilot-testing a design approach; it helped focus scienctific efforts on key knowledge gaps; and it demonstrated the potential for collaborations among scientists, stakeholders, and managers in river management decision making.

Lower Missouri River↗

USGS2007

Population viability analysis of Lower Missouri River shovelnose sturgeon with initial application to the pallid sturgeon

Demographic models for the shovelnose ( Scaphirhynchus platorynchus ) and pallid ( S. albus ) sturgeons in the Lower Missouri River were developed to conduct sensitivity analyses for both populations. Potential effects of increased fishing mortality on the shovelnose sturgeon were also evaluated. Populations of shovelnose and pallid sturgeon were most sensitive to age-0 mortality rates as well as mortality rates of juveniles and young adults. Overall, fecundity was a less sensitive parameter. However, increased fecundity effectively balanced higher mortality among sensitive age classes in both populations. Management that increases population-level fecundity and improves survival of age-0, juveniles, and young adults should most effectively benefit both populations. Evaluation of reproductive values indicated that populations of pallid sturgeon dominated by ages ≥35 could rapidly lose their potential for growth, particularly if recruitment remains low. Under the initial parameter values portraying current conditions the population of shovelnose sturgeon was predicted to decline by 1.65% annually, causing the commercial yield to also decline. Modeling indicated that the commercial yield could increase substantially if exploitation of females in ages ≤12 was highly restricted.

Lower Missouri River↗

USGS2007

The roles of physical habitat in reproduction and survival of pallid sturgeon and shovelnose sturgeon in the Lower Missouri River, progress 2005–06: Chapter D in Factors affecting the reproduction, recruitment, habitat, and population dynamics of pallid sturgeon and shovelnose sturgeon in the Missouri River

This report documents progress on three related components of habitat assessments in the Lower Missouri River during 2005–06. The habitat-use component links this research directly to sturgeon ecology research described in other chapters. The habitat availability and habitat dynamics assessments provide physical context for the ecological research. Results from 2005 to 2006 indicate that the methods developed to assess habitat use, quality, quantity, and dynamics are appropriate and sufficiently accurate to address critical questions about sturgeon habitat on the Lower Missouri River. Preliminary analysis of habitats occupied by adult female shovelnose sturgeon indicates that migrating sturgeon do not select for depth but seem to select for lower than reach-averaged velocities and higher than reach-averaged velocity gradients. Data collected to compile, calibrate, and validate multidimensional hydraulic models in probable spawning reaches appear to be sufficient to support the modeling objectives. Monitoring of selected channel cross sections and long profiles multiple times during the year showed little change at the upstreammost reach over the range of flows measured during 2006, likely because of channel stability associated with an armored bed. Geomorphic changes documented at monitoring cross sections increased with distance downstream. Hydroacoustic substrate-class parameters documented systematic changes with discharge and with hydraulic environment across the channel. Similarly, bed velocity varied predictably with discharge and hydraulic environment, indicating its potential as an indicator of bedload sediment transport. Longitudinal profiles showed substantial downstream movement of dunes over the monitored discharges, as well as substantial within-year variability in dune size. Observations of geomorphic change during the moderate flow range of 2006 support the hypothesis that the magnitude of flow modifications under consideration on the Lower Missouri River will be sufficient to transport sediment and potentially modify spawning habitats.

Lower Missouri River↗

USGS2004

Physical habitat dynamics in four side-channel chutes, lower Missouri River

Construction of the side-channel chutes has become a popular means to rehabilitate habitate of the Lower Missouri River. We studied various aspects of hydrology, hydraulics, and geomorphology of four side-channel chutes to document a range of existing conditions in the Lower Missouri River. The Cranberry Bend side-channel chute has existed for at least 40 years and is an example of a persistent, minimally engineered chute. The Lisbon Bottom side-channel chute is a young chute, created by extreme floods during 1993 – 1996, and allowed to evolve with minimum engineering of inlet and outlet structures. The Hamburg Bend and North Overton Bottom side-channel chutes were constructed in 1996 and 2000, respectively, as part of the Missouri River Bank Stabilization and navigation Fish and Wildlife Mitigation Project. These side-channel chutes provide increased areas of sandbars and shallow, slow water – habitats thought to be substantially diminished in the modern Missouri River. Depths and velocities measured in side-channel chutes are also present in the main channel, but the chutes provide more areas of slow, shallow water and they increase the range of discharges over which shallow, slow water is present. The 3.6 km long Lisbon Bottom chute provides as much as 50% of the entire shallow water habitat that exists in the encompassing 15 km reach of the river. At Cranberry Bend and Lisbon Bottom, the side-channel chutes provided 10 – 40% of the availabile sandbar area in the reach, depending on discharge. Each of the side-channel chutes shows evidence of continuing erosion and deposition. The longevity and the Cranberry Bend chute attests to dynamic stability – that is, a chute that maintains form and processes while shifting in position. The Hamburg chute similarly shows evidence of lateral movement and construction of flood plain to compensate for erosion. The Lisbon Bottom chute – the most intensively studied chute – appears to have achieved an equilibrium width and continues to migrate slowly; however, evidence of aggradation indicates that the chute has not reached an ultimate form, and may be continuing to adjust to altered hydrology and sediment availability. The North Overton Bottoms chute is the newest in the study. In its originally constructed form, the North Overton Bottoms pilot chute was extremely stable, even while being subjected to two floods in excess of 2-year recurrence interval and after accumulating large, potentially destabilizing large woody debris jams. Ongoing adaptive re-engineering of the North Overton Bottoms chute has prevented assessment of how the chute might have adjusted its form in the absence of intervention.

Iowa, Kansas, Missouri, Nebraska↗