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Research about Clear Lake

Source-linked reports with geographic coverage including Clear Lake.

At least 19 recordsLinked to original sources
USGS2025

Gillnet sampling methods for monitoring status and trends of Clear Lake Hitch in Clear Lake, Lake County, California

The Clear Lake Hitch ( Lavinia exilicauda chi ) is a minnow endemic to Clear Lake, Lake County, California. This species is listed as a threatened species under the California Endangered Species Act and has been petitioned for listing under the United States Endangered Species Act. In 2017, the U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, initiated a Clear Lake Hitch monitoring program to generate information annually on relative abundance and size structure. The monitoring program was organized around a conceptual life cycle diagram, focused on life stages approximately ≥1 year of age, and incorporated a probabilistic study design involving approximately 10 days of short-duration (approximately 40 minutes) gillnet sampling undertaken during daytime. This report documents monitoring program activities from 2017 to 2023 and presents the results of an evaluation of the monitoring program. The evaluation was done after the 2023 sampling event, following 6 years of implementation, which is the approximate generation cycle of Clear Lake Hitch. The results of the evaluation indicated the following: (1) gillnets used in the monitoring program were effective at capturing Clear Lake Hitch aged 1 year or more; (2) the study design was effective at generating the information needed to characterize Clear Lake Hitch relative abundance and size structure, and meaningful operational efficiencies can be obtained by implementing simple changes; and (3) future sampling can be scaled to approximately 4–7 days of effort and maintain at least 80-percent confidence in detecting at least a 25-percent change in abundance, assuming past work productivity is maintained and future data are typical of previous data.

California↗
USGS2025

Monitoring cyanobacteria temporal trends in a hypereutrophic lake using remote sensing: From multispectral to hyperspectral

Cyanobacterial harmful algal blooms (cyanoHABs) and associated cyanotoxins are a concern for inland waters. Due to the extensive spatial coverage and frequent availability of satellite images, multispectral remote sensing tools demonstrate utility for monitoring these blooms. The next frontier for remote sensing of cyanoHABs in inland waters is hyperspectral data. Recent and upcoming hyperspectral satellite missions using narrow wavelength imaging spectrometers could have a major impact on advancing our ability to detect, quantify, and characterize cyanobacterial blooms. This study compares multispectral and hyperspectral remote sensing capabilities and processing tools for monitoring cyanoHAB dynamics. We evaluated the temporal trends of cyanoHABs in Clear Lake, California, a hypereutrophic lake with diverse cyanobacteria genera based on 38 sampling events over a five-year monitoring period (2019–2023). We validated the Sentinel-3 Ocean and Land Color Instrument (multispectral) Cyanobacteria Index algorithm for Clear Lake using in situ cyanobacteria measurements, which complemented our field-based evaluation of cyanobacteria trends in Clear Lake. We then demonstrate the advantages of hyperspectral data from both in situ spectroradiometer measurements and full-lake hyperspectral satellite images. We apply the Spectral Mixture Analysis for Surveillance of HABs (SMASH) workflow, a Multiple Endmember Spectral Mixture Analysis (MESMA) algorithm, to the hyperspectral images to assess the potential of satellite imaging spectrometer data to identify cyanobacteria genera – the first study to test this tool outside its original study sites. We developed a Clear Lake-specific cyanobacteria spectral library using our field spectroradiometer measurements to improve SMASH performance in Clear Lake, which supports the continued development of this tool.

California↗
USGS2022

Eye lenses reveal ontogenetic trophic and habitat shifts in an imperiled fish, Clear Lake hitch (Lavinia exilicauda chi)

Stable isotopes recorded in fish eye lenses are an emerging tool to track dietary shifts coincident with use of diverse habitats over the lifetime of individuals. Eye lenses are metabolically inert, sequentially deposited, archival tissues that can open avenues to chronicle contaminant exposures, diet histories, trophic dynamics and migratory histories of individual fishes. In this study, we demonstrated that trophic histories reconstructed using eye lenses can resolve key uncertainties regarding diet and trophic habitat shifts. Clear Lake hitch ( Lavinia exilicauda chi ), a threatened cyprinid, inhabits a single lake (Clear Lake, Lake County, California) and utilizes tributary streams for reproduction. Bayesian mixing models applied to δ 13 C and δ 15 N recorded in eye lenses uncovered ontogenetic diet shifts that corresponded with shifts in occupation of habitats providing spawning (tributary streams), rearing (littoral lake), and growth (pelagic lake) functions. The reconstruction of size-structured trophic and habitat information can provide vital information needed to manage and conserve imperiled species such as the Clear Lake hitch.

California↗
USGS2021

Spatial and temporal distribution of radio-tagged Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) suckers in Clear Lake Reservoir and associated spawning tributaries, Northern California, 2015–17

Executive Summary Data from a multi-year radio telemetry study were used to assess seasonal distribution patterns for two long-lived, federally endangered catostomids across substantially different water conditions in Clear Lake Reservoir, northern California. Lost River ( Deltistes luxatus ) and shortnose ( Chasmistes brevirostris ) suckers, two species endemic to the Klamath Basin, were implanted with radio transmitters in each of 3 years in an effort to expand our understanding of seasonal sucker movements within the reservoir and their migrations in spawning tributaries. Clear Lake Reservoir and its tributaries are part of a critical management unit within the Lost River Basin Recovery Unit for populations of Lost River and shortnose suckers. We documented residency and migratory behaviors and how behaviors were affected by lake surface elevations and water management practices. Adult suckers were captured during autumn trammel net sampling in the west lobe of the reservoir and implanted with internal radio transmitters. A total of 163 suckers were radio-tagged (75 in 2014, 64 in 2015, and 24 in 2016); 27 more shortnose suckers were tagged than Lost River suckers to reflect the larger population of shortnose suckers in the reservoir. Sex ratios were approximately equal for each species. Aerial telemetry surveys were used to monitor radio-tagged fish from January 20 to December 2 each year and to document the upstream extent of spawning migrations in the tributaries. Surveys were scheduled more frequently during the spawning season (February–June) when suckers are known to move out of the reservoir and into spawning tributaries.

California↗
USGS2019

Strontium isotopes reveal ephemeral streams used for spawning and rearing by an imperiled potamodromous cyprinid--Clear Lake hitch Lavinia exilicauda chi

Identification of habitats responsible for the successful production and recruitment of rare migratory species is a challenge in conservation biology. Here, a tool was developed to assess life stage linkages for the threatened potamodromous cyprinid Clear Lake hitch Lavinia exilicauda chi . Clear Lake hitch undertake migrations from Clear Lake (Lake County, CA, USA) into ephemeral tributary streams for spawning. An aqueous isoscape of strontium isotopic ratios ( 87 Sr/ 86 Sr) was constructed for Clear Lake and its watershed to trace natal origins and migration histories of adult recruits. Aqueous 87 Sr/ 86 Sr differentiated Clear Lake from 8 of 10 key tributaries and clustered into 5 strontium isotope groups (SIGs) with 100% classification success. Otolith 87 Sr/ 86 Sr showed all five groups contributed variably to the population. The age at which juveniles migrated from natal streams to Clear Lake ranged from 11 to 152 days (mean ± s.d., 43 ± 34 days) and was positively associated with the permanency of natal habitat. This information can be used by resource managers to develop conservation actions for Clear Lake hitch. This study demonstrates the utility of strontium isotopes in otoliths as a tool to identify important freshwater habitats occupied over the lifespan of an individual that would otherwise be challenging or impossible to trace with other methods.

California↗
USGS2018

Age and growth of a native, lightly exploited population of Coregonus clupeaformis (Lake Whitefish) in a small natural lake in Maine

We assessed annual growth of Coregonus clupeaformis (Lake Whitefish) from a natural, lightly exploited population in a small lake in northern Maine using observed and back-calculated length-at-age data. We sampled Lake Whitefish from Clear Lake, ME, with gill nets and extracted otoliths from 57 fish. We incorporated age-at-length data into a von Bertalanffy growth function, which we employed to model growth trajectories from individual fish. We used these estimates to evaluate length-at-age variability within this population. Ages for Lake Whitefish varied from 8 y to 30 y. Among all fish, we characterized incremental growth by an average-growth coefficient of K = 0.156 and an estimated L∞ of 484 mm. The oldest individuals demonstrated the slowest incremental growth (K = 0.106) when compared to younger cohorts (K = 0.218). We observed an inverse relationship between L∞ and K and the estimated age-at-capture (R2 = 0.178 and 0.723, respectively), which suggests relatively slow growth and a smaller maximum size for the longest living members of the population. Our estimated parameters serve as a reference to inform management of populations of Lake Whitefish.

Maine↗
USGS2017

Late-Pleistocene and Holocene remains of Hysterocarpus traski (Tule Perch) from Clear Lake, California, and inferred Holocene temperature fluctuations

The remains of scales of Hysterocarpus traski Gibbons (Tule perch) were found throughout a 27.44-m core from Clear Lake. Most scales occurred between the mud surface and deposits approximately 11,000 years old. Changes in growth rates of the animals were examined by measuring scale annuli and applying an empirically established regression of fish length on scale radius. The data indicate a pattern of accelerating growth rates, reaching a peak between ⋍4000 and 2800 BP. After ⋍2800 BP, growth rates decline markedly. Because the growth rates of these animals are essentially dependent on temperature, the changes observed in the patterns of growth probably reflect changes in climate in the northern Coast Range. The general pattern of inferred temperature increase during the early and middle Holocene, ending between ⋍4000 and 2800 BP, is consistent with evidence from tree-line studies and palynology indicating higher temperatures in parts of the western United States during this period.

California↗
USGS2015

A food web modeling analysis of a Midwestern, USA eutrophic lake dominated by non-native Common Carp and Zebra Mussels

Food web modeling is recognized as fundamental to understanding the complexities of aquatic systems. Ecopath is the most common mass-balance model used to represent food webs and quantify trophic interactions among groups. We constructed annual Ecopath models for four consecutive years during the first half-decade of a zebra mussel invasion in shallow, eutrophic Clear Lake, Iowa, USA, to evaluate changes in relative biomass and total system consumption among food web groups, evaluate food web impacts of non-native common carp and zebra mussels on food web groups, and to interpret food web impacts in light of on-going lake restoration. Total living biomass increased each year of the study; the majority of the increase due to a doubling in planktonic blue green algae, but several other taxa also increased including a more than two-order of magnitude increase in zebra mussels. Common carp accounted for the largest percentage of total fish biomass throughout the study even with on-going harvest. Chironomids, common carp, and zebra mussels were the top-three ranking consumer groups. Non-native common carp and zebra mussels accounted for an average of 42% of the total system consumption. Despite the relatively high biomass densities of common carp and zebra mussel, food web impacts was minimal due to excessive benthic and primary production in this eutrophic system. Consumption occurring via benthic pathways dominated system consumption in Clear Lake throughout our study, supporting the argument that benthic food webs are significant in shallow, eutrophic lake ecosystems and must be considered if ecosystem-level understanding is to be obtained.

Iowa↗
USGS2012

Characterizing seasonal and diel vertical movement and habitat use of lake whitefish (Coregonus clupeaformis) in Clear Lake, Maine

Seasonal and daily vertical activity of lake whitefish Coregonus clupeaformis was studied in Clear Lake, Maine (253 ha), using acoustic telemetry from November 2004 to June 2009. Twenty adult lake whitefish were tagged with acoustic tags that had either a depth sensor or both depth and temperature sensors to assess vertical habitat use at a seasonal and daily resolution. Vertical habitat selection varied seasonally and was strongly influenced by temperature. Between December and April, when the lake was covered with ice, surface temperature was below 2°C and tagged individuals occupied deep areas of the lake (∼15 m). After ice-out, fish ascended into shallow waters (∼5 m), responding to increased water temperature and possibly to greater foraging opportunity. When surface water temperatures exceeded 20°C, fish descended below the developing thermocline (∼9 m), where they remained until surface temperatures fell below 20°C; fish then ascended into shallower depths, presumably for feeding and spawning. Through the winter, fish remained in thermal habitats that were warmer than the surface temperatures; in the summer, they selected depths with thermal habitats below 15°C. Though the amplitude varied greatly across seasons, lake whitefish displayed a strong diurnal pattern of activity as measured by vertical velocities. Fish were twofold more active during spring, summer, and fall than during winter. Lake whitefish exhibited diel vertical migrations, rising in the water column during nighttime and occupying deeper waters during the day. This pattern was more pronounced in the spring and fall and far less prominent during winter and summer. The strong linkage between temperature and habitat use may limit the current range of lake whitefish and may be directly impacted by climatic change.

Main↗
USGS2012

Preliminary juvenile Lost River and shortnose sucker investigations in Clear Lake, California--2011 pilot study summary

Poor recruitment appears to limit the recovery of Lost River and shortnose sucker populations in Clear Lake Reservoir, California, but the cause is unknown. Adult suckers migrate up Willow Creek and its tributaries to spawn in some years, but low flow in Willow Creek may inhibit spawning migrations in other years. It is unclear whether spawning is successful, larvae survive, or juveniles persist to adulthood. Environmental variables associated with successful spawning or young-of-year survival have not been identified and early life history for these populations is poorly understood. The U.S. Geological Survey in cooperation with the U.S. Fish and Wildlife Service and Ruby Pipeline L.L.C. Corporation (El Paso, Tex.) initiated a study in 2011 to better understand juvenile sucker life history in Clear Lake Reservoir, and to identify constraints in the early life history that may limit recruitment to the adult spawning populations. This is a report on the 2011 pilot study for this project.

California↗
USGS1988

Amino-acid diagenesis and its implication for late Pleistocene lacustrine sediment, Clear Lake, California

The diagenesis of amino acids in sediments from Clear Lake core CL-80-1 is indicated by changes in amino acid concentrations, compositions, and stereochemistry. Concentrations of total amino acids decrease with depth, but the decrease is not systematic, possibly reflecting a nonuniformity in sedimentary and postdepositional processes affecting the amino acids. Ratios of neutral/acidic amino acids may indicate that the pH of interstitial water is slightly alkaline to slightly acidic and that the organic matter is well humified. Ratios of nonprotein/protein amino acids suggest that some changes in amino acids with depth result from microbial degradations. The extent of racemization of alanine increases with depth; the trends of these data may be explained, in part, by rapid sedimentation within the lake. Agreement between extents of alanine racemization for sediments from equivalent depths in two cores from the lake suggests that diagenetic temperatures are uniform within the sediments of the northern basin of Clear Lake.

California↗
USGS1983

Temperature and precipitation estimates through the last glacial cycle from Clear Lake, California, pollen data

Modern pollen surface samples from six lake and marsh sites in the northern California Coast Ranges establish a linear relation between elevation and the oak/(oak + pine) pollen ratio. Modern temperature and precipitation lapse rates were used to convert variations in the pollen ratio into temperature and precipitation changes. Pollen data from two cores from Clear Lake, Lake County, California, spanning the past 40,000 and 130,000 years were used to estimate temperature and precipitation changes through the last full glacial cycle. The maximum glacial cooling is estimated to be 7° to 8° C; the last full interglacial period was about 1.5° C warmer than the Holocene, and a mid-Holocene interval was warmer than the present. The estimated precipitation changes are probably less reliable than the estimated temperature changes.

California↗
USGS1981

Geochemistry of amino acids in sediments from Clear Lake, California

By studying the geochemistry of amino acids, we attempt to clarify uncertainties in the radiocarbon chronology and in correlations of ash beds and pollen spectra in lacustrine sediment from Clear Lake, California. Two amino acids, aspartic acid and alanine, are considered in detail. Relative concentrations of aspartic acid decrease with depth, a result likely due to diagenesis and to preferential adsorption and hydrolysis in clay. Relative concentrations of alanine show the reverse effect with depth, probably due, in part, to the generation of alanine from other amino acids during diagenesis. The aspartic acid racemization rate calibrated by radiocarbon yields anomalously low age and temperature estimations for Clear Lake when kinetic assumptions from a study in Lake Ontario are used. However, the “apparent” alanine racemization rate correlates well with the alanine racemization rate determined for sediments from Lake Biwa, Japan. Our age assessment based on alanine supports a time-depth curve obtained from oak pollen and oxygen isotopes for Clear Lake representing a time span of about 130,000 yr.

California↗
USGS1981

Description and preliminary interpretation of core CL-80-2, Clear Lake, Lake County, California

Coring operations in the west basin of Clear Lake produced a regional Quaternary reference section to augment and extend a previous study of cores from Clear Lake. This report concerns 165.8—m—long core CL-80-2, which was continuously cored in 8.0 m of water and has a 65.0 percent recovery. The sedinents in core CL-80-2 are composed primarily of clayey and silty sapropelic mud that is similar to those presently being deposited in the lake. The core ended in coarse CO2—charged sand at 165.8 m. The age of sediment at the bottom of the core is inferred to be approximately 175,000 years.

California↗
USGS1981

Description and preliminary interpretation of core CL-80-1, Clear Lake, Lake County, California

Coring operations were conducted in the west basin of Clear Lake during July and August 1980 to produce a regional Quaternary reference section. A 177-m-long core (CL-80-1) was taken, which also augments and extends a previous study of eight shorter cores collected from Clear Lake in 1973. Core CL-80-1 was continuously cored in 7.5 m of water, and 66.5 percent recovery was achieved. The sediments are composed primarily of clayey and silty sapropelic mud similar to those presently being deposited in the lake, and are interbedded with local coarse sand and gravel deposits and thin volcanic ash beds. Coring was terminated when coarse rounded gravel and cobbles of Franciscan assemblage lithology were encountered. The location of core CL-80-1 is between two other core sites of the 1973 series of cores, one of which (CL-73-4) is 115 m long and contains a well-defined, uninterrupted pollen and physical stratigraphic record from the present to about 130,000 years ago. Paleomagnetic and preliminary pollen analyses of core CL-80-1 are complete and comparison of these results with those of core CL-73-4 suggest that the new core represents a record from the present to about 175,000 years ago.

California↗
USGS1979

Pollen counts from core 7, Clear Lake, Lake County, California

The U. S. Geological Survey recovered eight sediment cores from beneath Clear Lake, Lake County, California, in 1973. The locations of the core sites are shown in fig. 1; lithologic descriptions of the cores, as well as radiographs, have been given by Sims and Rymer (1975a-g, 1976). A list of the procedures followed in sampling the cores and a list of the samples taken may be found in Beaver and others (1975); fish remains from two of the cores have been studied by Casteel and others (1975, 1977a,1977b). This report gives raw count data for 72 pollen samples from core 7, a 27.4-m long core from the southern or Highlands Arm of the lake (fig. 1). Pollen counts for core 4, a 115-m core from the main basin of the lake, are given in Adam (1979); that core spans the time interval between the end of the penultimate glacial period, about 130,000 years ago, and the present.

California↗