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Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

At least 1,693 records · Page 94Linked to original sources

USGS2025

The effects of carnivory and herbivory on the energy balance of Arctic grizzly bears

Omnivores often face tradeoffs between selecting for spatially dispersed energy-dense vertebrate prey versus densely distributed herbivorous resources that have limited energetic value per unit intake. Arctic grizzly bears ( Ursus arctos ) are large omnivores within a resource-limited ecosystem that are known to exhibit smaller body masses and occur at lower densities than grizzly bears in other regions of North America. We evaluated the energy balance of Arctic grizzly bears during a portion of the fall hyperphagic period in two ecologically differing regions on Alaska’s northern Arctic coast by monitoring mass change, food intake, activity, and energy expenditure of 12 individuals over 17–22 days. Bears in coastal areas were more carnivorous than bears in the foothills that were predominantly herbivorous and frugivorous. Carnivory was associated with greater movement, body fat, and energy expenditure and two of four carnivorous bears lost mass. Overall, the mean body fat of the bears in this study was 34% lower than other grizzly bear populations in North America in the fall. Furthermore, the bears in this study exhibited relatively small changes in body mass (x̄ = 3%, range =−2 to 11%) that were 60% lower than other grizzly bear populations which typically gain substantial mass in the fall in preparation for denning. Our results, while representing a snapshot from a small number of bears during the fall hyperphagic period, are consistent with previous studies and indicate limited availability of energy-dense food resources during this time for grizzly bears in this region of the Arctic.

Alaska↗

USGS2025

Summer snow determines the depth to ice-cemented ground under dry permafrost in Antarctica

Dry permafrost underlain by ice-cemented permafrost has been reported in several locations in Antarctica. Initially thought to be relic ice, it is now understood that this subsurface ice is in equilibrium with the surface conditions, although it is not in equilibrium with the atmosphere. We use year-round data from University Valley in the Dry Valleys and Elephant Head in the Ellsworth Mountains to investigate the seasonal variations in water vapour flux that control the depth to the ice table under dry permafrost. Our analysis shows that the mean annual water vapour density of the soil surface exceeds the atmospheric value by a factor of up to ~2 due to summer snow. The attenuation and phase shift of the annual temperature cycle with depth result in colder temperatures at the ice table than at the surface of the soil in summer. We conclude that this temperature gradient, combined with the summer snow, provides the flux of water to the ice table necessary to maintain the ice. In University Valley, reducing the snow days by 40% moves the stability depth of the ice table from 42 to 66 cm. Increasing the snow days by 60% shifts the ice table to 17 cm. These variations can explain the observed gradient in the depth to the ice table in University Valley.

Antarctic Science↗

USGS2025

Interspecific interactions moderate direct effects of vegetation change resulting from prescribed fires

Savannas depend on frequent, low-intensity fires that shape animal and plant communities. These fires alter animal populations, movement, and habitat use. Here, we report on how fires in a longleaf pine (Pinus palustris) savanna affected small mammal microhabitat use via changes in competition and predation. We monitored small mammal populations and vegetation subjected to biennial prescribed fires and compared microhabitat use of three small mammal populations [hispid cotton rats (Sigmodon hispidus), cotton mice (Peromyscus gossypinus) and oldfield mice (Peromyscus polionotus)] in the presence and absence of mesocarnivores while accounting for changes in density and movement of each small mammal species. Densities of cotton rats varied greatly across years but were similar between predator exclosures and controls. However, frequency of use was greater in exclosures than in controls irrespective of vegetation characteristics, suggesting predation risk altered cotton rat microhabitat use. Conversely, higher relative abundance of cotton rats was associated with lower cotton mouse and oldfield mouse use, suggesting spatial separation in niche and indicating that cotton mice expand their realized niche following predation-induced declines of cotton rats associated with prescribed burn events. Our results contribute to a better understanding of pyrodiversity and how interspecific interactions can moderate effects of vegetation changes following prescribed fires.

Georgia↗

USGS2025

Density as a mechanism linking habitat disturbance to increased pathogen prevalence: Evidence from a natural experiment

Sudden habitat loss associated with environmental disturbance can trigger animals to move from affected to undisturbed areas, where increases in local density may occur. Although pathogen transmission is strongly related to local density, how crowding after habitat loss affects infection dynamics in wild populations remains unclear. Here we conceptualize the Disturbance-Density-Disease hypothesis, which posits that disturbance-induced habitat loss results in increased pathogen prevalence via increases in local density at adjacent, undisturbed patches. We then used data from before, during, and after flooding disturbance to test this hypothesis in boreal toads Anaxyrus boreas boreas co-occurring with the pathogenic fungus Batrachochytrium dendrobatidis ( Bd ). We collected Bd samples from captured individuals during a 5-year (2015–2019) mark-recapture study of boreal toads ( n = 1295) that breed in beaver ponds in western Wyoming, USA. During spring of 2017, an extreme flooding event destroyed several beaver dams, resulting in the loss of breeding habitat. We compared host density and pathogen prevalence pre- and post-disturbance at sites affected versus unaffected by flooding. At affected sites, population density and Bd prevalence increased at adjacent, undisturbed ponds following the sudden loss of habitat. Moreover, neither host density nor Bd prevalence increased at control sites in areas unaffected by flooding. Taken together, our results support hypothesized links between disturbance, adjacent increases in density, and subsequent increases in pathogen prevalence. Our study contributes to a growing body of ecological research leveraging natural experiments to extract insights from extreme disturbance events. By doing so, we demonstrate an important consequence of disturbance beyond proximate habitat loss and introduce a clear conceptual approach (the Disturbance-Density-Disease hypothesis) to understanding how pathogen transmission can be affected by disturbance via alterations to local density.

Wyoming↗

USGS2025

Trophic assessment of potential competition between invasive cichlids and sport fish in Puerto Rico reservoirs

Objective Several species of New World cichlids have recently invaded reservoirs in Puerto Rico, potentially jeopardizing established recreationally important, albeit nonnative, sport fish populations. Interactions between invasive species and important sport fish must be understood so that they can be mitigated when feasible. This study compared monthly prey consumption between three invasive cichlids (Jaguar Guapote Parachromis managuensis and two species of Amphilophus ) and two principal sport fishes (Largemouth Bass Micropterus nigricans and Butterfly Peacock Bass Cichla ocellaris ) to understand potential for competitive interactions. Methods Stomach contents were evaluated quarterly using gastric lavage for sport fish and destructive sampling techniques for invasive species. Prey proportion by mass was calculated for each individual, and mean prey proportion by mass was calculated for each species by reservoir, month, and overall. Multivariate hypothesis testing using permutational multivariate analysis of variance and visualization of potential diet overlap were performed via analysis of variance and nonmetric multidimensional scaling (NMDS), respectively. Results Fish were the most common prey type, and Threadfin Shad Dorosoma petenense was the most prevalent prey species. Although there were significant differences in diets of invasive cichlids and sport fishes ( P < 0.01), there also was considerable overlap based on low percentages of variation in diets explained by species (3–19% < pseudo- R 2 ) and NMDS visualizations. Diets varied little across reservoirs and months (≤4% pseudo- R 2 ; high overlap in NMDS space). Conclusion These data indicate that the diet of Jaguar Guapote and Amphilophus spp. may overlap with that of sport fish populations in Puerto Rico. Jaguar Guapote relied on Threadfin Shad more than other species, with Amphilophus spp. relying more on detritus and noncrayfish invertebrates. Thus, if prey are limited, Jaguar Guapote may have a more direct effect via competition for prey. Finally, we report evidence of Largemouth Bass recruitment failure and local extirpations that support a hypothesis that invasive cichlids are having negative effects on at least Largemouth Bass, although the mechanism is unclear.

Puerto Rico↗

USGS2025

From fences to roads: Changes in barrier behaviour of Mongolian gazelle across different types of linear infrastructure in Mongolia

Poorly designed linear infrastructure can reduce habitat connectivity and be major barriers for migratory wildlife. An important start at effective mitigation is understanding how individuals respond when barriers are encountered. This can be done via comparison of fine- and broad-scale behavioural responses to various anthropogenic barrier types. We classified fine-scale responses of 62 Mongolian gazelles ( Procapra gutturosa ) across different barrier types, seasons and times of day. We also investigated interactions at a broader scale by measuring the length of linear infrastructure traced, interaction duration and crossing success rate. We learned that gazelle behaviour varied according to barrier permeability, and that fences were major obstacles. Gazelles exhibited similar bouncing behaviour when confronted with paved roads as with fences, suggesting paved roads can act as semi-permeable barriers during high traffic volume. Broad-scale movement patterns revealed gazelles travelled considerable distances along fences—averaging 40.2 km, and up to 211.6 km—before moving away or crossing. Long-distance tracing movements can help identify areas with the strongest barrier effect and guide mitigation measures for current and future linear infrastructure. Designing infrastructure and implementing conservation strategies for ungulates in steppe ecosystems will benefit from taking into account behavioural responses at both fine and broad scales.

Proceedings of the Royal Society B: Biological Sci↗

USGS2025

Development of high-throughput genomic resources to inform white-tailed deer population and disease management

White-tailed deer ( Odocoileus virginianus ) are the most abundant and widespread cervid in North America. Genetic data are used as a tool to monitor populations and make management decisions for this game species. However, the development and use of genomic tools that can generate a set of markers suitable for longitudinal genomic data collection, whether for management purposes or to study the demographic and evolutionary processes of widely distributed species, have been challenging. This is mainly due to the cost required to fully implement and interpret the data produced. Here, we generated whole genome resequencing data for 44 free-ranging deer from three regions in their central and eastern North American range and identified over 89 million single nucleotide polymorphisms (SNPs). We used a subset of these SNPs to develop two nested SNP tools, a high-density array (702,183 SNPs) and a medium-density array (72,723 SNPs) to support deer and chronic wasting disease (CWD) management and research. SNPs were selected to ensure an even distribution across scaffolds of the reference genome and include SNPs associated with CWD susceptibility. Using genotyping results for 469 deer from 15 states in the US and Mexico generated by the high-density array and 1335 deer from 18 states generated by the medium-density array, we assessed genotyping success across different populations and explored some insights into population structure. These genomic tools offer a standard set of markers that will enable researchers and managers to address important questions related to white-tailed deer and CWD management. Our SNP arrays also offer the opportunity to examine aspects of white-tailed deer ecology and evolutionary history that were previously difficult to address.

Molecular Ecology Resources↗

USGS2025

Potential thiamine deficiency of phytoplankton across a productivity gradient and seasons in Ohio lakes

Although nitrogen and phosphorus deficiency of algal blooms have been the focus of substantial attention, organic nutrients can limit algal growth in aquatic systems. Growing evidence indicates thiamine (vitamin B 1 ) can influence the community of primary producers in marine systems, but comparatively little is known about the effect of thiamine on freshwater algal productivity. We conducted 106 nutrient deficiency experiments with water from 39 Ohio lakes of varying trophic status during the growing seasons (April–October) of 2008–2009. Specifically, we tested the response of phytoplankton biomass (as chlorophyll a , chl- a ) relative to controls to added nitrogen (N), phosphorus (P), thiamine (Th), or combinations of N + P and N + P + Th. Next, we compared the chl- a growth response of treatment/control to published thresholds based on frequentist approaches and compared the conclusions with Bayesian model results that focused on probability of a response. Although N + P addition was consistently associated with the largest chl- a response, we found evidence of a thiamine influence on phytoplankton growth in some experiments. The Bayesian approach suggested thiamine may become more limiting as the growing season progresses. By late in the growing season, there was an 85% probability of a positive algal growth response to thiamine addition. Understanding the role of thiamine or other overlooked nutrients is not likely to alter the prevailing understanding of nutrient deficiency in freshwater ecosystems. However, we present evidence that freshwater phytoplankton may experience thiamine deficiency and suggest limnologists consider thiamine when exploring resource deficiencies.

Ohio↗

USGS2025

Comparisons of shoreline positions from satellite-derived and traditional field- and remote-sensing techniques

Satellite-derived shorelines (SDS) have the potential to help researchers answer critical coastal science questions and support work to predict coastal change by filling in the spatial and temporal gaps present in current field-based and remote-sensing data collection methods. The U.S. Geological Survey conducted comparison analyses of traditionally sourced shorelines and SDS in diverse coastal landscapes to determine how SDS could be used in ongoing and future work across varied coastal environments and provided some initial findings that could be used for implementation. Using CoastSeg, a browser-based program for SDS detection and mapping, SDS for the period 1984–2023 for multiple locations across the United States were compared to shoreline positions from traditionally sourced shoreline data. In this report, the authors present these comparisons alongside lessons learned and challenges encountered when building SDS workflows in different coastal locations. Results show that individual SDS have larger uncertainty and yet produced similar linear trends to sparser, traditionally sourced shoreline data; because SDS methods provide orders of magnitude more data than traditional shoreline-detection methods, they can be used to evaluate shoreline behaviors. Refining average scalar slopes used in tidal corrections did not result in substantial decreases in uncertainty. Using lessons from this work to outline needs for regional implementation, initial setup time would be considerable, being on the order of weeks. However, once complete, shoreline detections and analyses are fast (on the order of minutes to hours) and achievable using a desktop computer.

Alaska, Florida, Massachusetts, Washington↗

USGS2025

Temporal changes in nutrient concentrations in the Lower Grand River and selected drainage basins, Missouri and Iowa, during the Mississippi River Basin Healthy Watersheds Initiative (2010–23)

This report describes a cooperative study by the U.S. Geological Survey and Missouri Department of Natural Resources that evaluated temporal changes in total nitrogen (TN) and total phosphorus (TP) concentrations in the Lower Grand River hydrologic unit. The study focused on trends since 2010, when the basin was designated as a priority drainage basin of the Mississippi River Basin Healthy Watersheds Initiative (MRBI). At three local drainage basins within the Lower Grand hydrological unit (MRBI sites), stream nutrient trends were evaluated using flow-adjusted (FA) TN and TP concentrations for water years 2011 through 2023. FATN concentration trends were not statistically significant for any MRBI site. One site (site 2) showed a statistically significant increasing trend in FATP concentration, indicating a possible increase in phosphorus sources in parts of the basin. Overall, streamflow variability appeared to be the dominant factor affecting nutrient concentrations at MRBI sites. At five regional drainage basins, including the Grand River and nearby rivers with data from 1994 through 2023 (long-term sites), annual flow-normalized (FN) TN and TP concentrations were evaluated for trends before (water years 2000–10) and during (water years 2010–23) the MRBI. For water years 2010 through 2023, annual FNTN and FNTP concentrations decreased in the Grand River, as well as in the Nodaway and Chariton Rivers, which were not targeted by the MRBI. The Grand River (site 9) reversed from increasing to decreasing FNTP concentrations after 2010, with a 26-percent reduction. Annual FNTN and FNTP concentrations also decreased at the Missouri River sites. While nutrient reductions in the Grand River may reflect the effects of implemented conservation practices, similar trends in nearby, nontargeted rivers and the absence of strong decreasing trends at MRBI sites suggest that broader regional factors, instead of or in addition to MRBI efforts, may have contributed to nutrient reductions in the Grand River.

Iowa, Missouri↗

USGS2025

Depth of magma crystallization and fluid exsolution beneath the porphyry-skarn Cu deposits at Santa Rita and Hanover-Fierro, New Mexico, USA

The depth level at which porphyry Cu–forming magmas fractionated and exsolved mineralizing fluids is actively debated. In the classic model, extensive magma fractionation occurs in large, upper crustal magma chambers, and concomitant fluid exsolution leads to forceful expulsion of residual magmas in the form of porphyry dikes, stocks, and breccia pipes, which subsequently serve as pathways for the mineralizing fluids. In contrast, some recent studies highlighting the role of deep crustal magma fractionation in the production of fertile magmas essentially deny the existence of upper crustal magma chambers at the time of mineralization. To address this, we conducted a detailed thermobarometric investigation of 13 intermediate to felsic, porphyritic intrusive rocks related to porphyry-skarn Cu mineralization at Santa Rita and Hanover-Fierro, New Mexico, United States, representing two premineralization magmas (61–60 Ma), seven synmineralization magmas (60–58 Ma), and four late- to postmineralization magmas (58–57 Ma). For each sample, the pressure of last magma crystallization before final magma ascent to the current exposure level was reconstructed based on Al-in-hornblende barometry of small hornblende inclusions trapped within quartz phenocrysts and through titanium-in-quartz (TitaniQ) thermobarometry of the host quartz phenocrysts themselves. Since quartz is one of the last crystallizing magmatic minerals, and no significant phenocryst growth could have occurred in small dikes and stocks after final magma emplacement, quartz phenocrysts and their contained hornblende inclusions record the depth of last magma crystallization before final magma ascent. When present, hornblende phenocrysts and hornblende inclusions within other major phenocrysts were also analyzed. Both quartz and hornblende barometers return consistent average pressures of 3.2 ± 0.4 kbar for the entire suite of pre- to postmineralization magmas, corresponding to depths of 11 to 14 km. The synmineralization magmas return even more consistent average pressures of 3.1 ± 0.2 kbar, corresponding to a depth of 12 ± 1 km. The volume of the mineralizing porphyry dikes and stocks at the emplacement level is far too small to have provided all the fluids and metals required to form the observed ore deposits. Therefore, the majority of the ore-forming fluids must have originated from the magmas that crystallized at 12 ± 1 km depth. The ore deposits, conversely, formed at ~5-km paleodepth. This implies that most of the mineralizing fluids traveled an average vertical distance of ~7 km from their magmatic source to the eventual site of ore precipitation. The relatively unaltered nature and low veining degree of deeper parts of mineralized porphyry dikes and stocks suggest that the fluid transport through these intrusive bodies occurred mostly at near-solidus conditions by means of fluid percolation along grain boundaries. In summary, our results suggest that (1) a large, upper crustal pluton exists ~7 km beneath the Santa Rita and Hanover-Fierro deposits; (2) abundant phenocryst crystallization occurred at this depth level; and (3) this pluton was the main source for the exsolution of ore-forming fluids. However, the investigated rocks have elevated whole-rock Sr/Y ratios, indicating magma fractionation at deep crustal levels. As a result, our preferred model is a combination of the two end-member models introduced above, with most magma fractionation having occurred in the deep crust and with residual, intermediate to felsic melts having ascended and accumulated at 11 to 14 km paleodepth, where they continued to crystallize with comparatively little crystal-liquid separation, before some of these magmas ascended further to shallow levels and quenched to porphyries.

New Mexico↗

USGS2025

Passive acoustic monitoring is a cost-effective approach to conduct inland surveys for marbled murrelets

The marbled murrelet ( Brachyramphus marmoratus ) is a seabird of conservation concern that nests in late-successional, old-growth forests in Oregon, Washington, and California, USA. Traditional audio-visual surveys have been the standard method for detecting murrelets in forests. Given that murrelets can be extremely cryptic in forest environments, audio-visual surveys are difficult, time consuming, and expensive to conduct. Passive acoustic monitoring (PAM) may be a useful and cost-effective alternative. Using a paired murrelet survey design, we compared detection probabilities across 88 survey points in forests of Oregon and Washington. We conducted 2–4 early morning audio-visual surveys and 13–53-day PAM surveys from 14 June through 5 August 2022 and 2023, when murrelets typically make the most frequent inland flights during the nesting season. We found the average detection probability for murrelets on any given day was higher for an audio-visual survey visit (0.40, SD = 0.17) than for a PAM survey day (0.19, SD = 0.10). However, the cumulative detection probability for PAM surveys was 0.98 (95% CI = 0.96–1.0) after 19 survey days, whereas the same cumulative detection probability would require 9 audio-visual survey visits. Using simulations to compare the cost-effectiveness of both methods, we found audio-visual surveys cost more when compared with PAM surveys in 61–91% of scenarios because they require specialized personnel training and additional pre-dawn visits. Further, PAM per survey costs decreased as the number of survey days per point increased and over time after initial costs were incurred, particularly when autonomous recording units were reused for multiple years. While audio-visual surveys are the standard method for murrelet surveys in forest habitats, PAM represents a more cost-effective approach to determine the presence of murrelets.

Oregon, Washington↗

USGS2025

Detection of viral, bacterial, and protozoan pathogens and microbial source tracking markers in paired large- and small-volume water samples

When sampling for waterborne microbes, researchers may need to diverge from recommended sample volumes due to logistical constraints, novel targets, or challenging matrices, with little guidance about the potential impact on results. In field studies, we measured bacteria, viruses, and protozoa (15 quantitative polymerase chain reaction assays) in paired large- and small-volume samples to evaluate method performance and relevant factors. Concordance between methods was low. Large-volume ultrafiltration yielded more detections than small-volume sampling, especially for pathogens in groundwater. Greater microbial concentrations were associated with more frequent detections in small-volume samples and greater concordance between paired samples. Large-volume samples appeared to be more susceptible to diminished sensitivity from complex sample matrices. In laboratory studies, recovery of microbes was poorer for large- than small-volume methods, although large-volume methods more reliably detected low-concentration targets. Large-volume samples were less stable than small-volume samples during storage. Overall, large-volume sampling was superior for detecting pathogens but may underestimate concentrations; small-volume sampling was more prone to false negatives but was adequate when concentrations were relatively high, like we observed for microbial source tracking in surface waters.

Wisconsin↗

USGS2025

Spatial occupancy patterns of the endangered northern long‐eared bat in New England

Aim White-nose syndrome has caused severe declines in eastern North American cave bats, leading to the federal listing of the northern long-eared bat ( Myotis septentrionalis ) as endangered in the United States and Canada. This has heightened the importance of long-term monitoring to inform species status assessments. We employed a combination of long-term repeated and single-season acoustic survey data to assess the regional presence, spatial distribution, occupancy, and detection probability of northern long-eared bats. Location New England, United States. Methods We analysed acoustic data from 2357 detector sites, aggregated by year, using Bayesian single-species occupancy models. We investigated the influence of habitat characteristics, climatic variables, and year (2015–2022) on occupancy and the effects of weather conditions and survey month (May to August) on detection probability. Spatial random effects were included to address residual spatial autocorrelation, with a 1-km resolution chosen based on significant positive autocorrelation observed in a non-spatial model. Results Occupancy was highest on steep, forested hillsides with minimal anthropogenic development, higher in warmer regions, particularly along coastlines and on offshore islands, and declined across survey years. Including a 1-km spatial random effect reduced residual autocorrelation and suggests northern long-eared bats utilise resources at small to medium landscape scales. Detection probability was highest earlier in the maternity season, but declined when monthly precipitation or temperature exceeded average conditions. Conclusions Conservation efforts that focus on steep, forested hillsides in warmer regions with low anthropogenic development could be beneficial. Our analysis supports the use of spatial random effects at a 1-km 2 scale, highlighting the importance of survey designs that capture ecological variation at species-specific resolutions. Additionally, early-season acoustic surveys conducted during favourable weather conditions may improve monitoring effectiveness. Acoustic sampling and spatial occupancy modelling offer powerful tools for monitoring remnant populations of northern long-eared bats and guiding conservation practices.

Connecticut, Maine, Massachusetts, New Hampshire, ↗

USGS2025

Evaluating the central–marginal hypothesis: Introgression and genetic variation at the trailing edge of Quercus bicolor

The central–marginal hypothesis (CMH) predicts reduced genetic diversity and increased differentiation in range-edge populations due to ecological marginality and limited gene flow. Deviations from this pattern, however, can result from historical demographic processes, variation in reproductive strategies or interspecific hybridization. The genus Quercus , known for hybridization and long-distance pollination, offers an excellent model to examine the spatial patterns of genetic diversity, structure and introgression across species distributions. Here, we investigate these dynamics in Quercus bicolor Willd., a widespread eastern North American oak. Using RADseq, we genotyped 142 individuals from 12 sites at the fragmented trailing range edge and nine sites from the range core. To detect introgression, we incorporated reference data from six sympatric white oak species. We reveal extensive introgression, particularly from Q. lyrata Walt., in nearly all southern edge populations, but none in core populations despite sympatry with closely related congeners. Southern populations also showed increased genetic structure and differentiation, but not reduced diversity or increased inbreeding, even when only examining non-admixed individuals. Regression analyses reveal relationships between introgressed ancestry and heterozygosity, inbreeding and differentiation, indicating that introgression may buffer range-edge populations against genetic erosion by introducing novel alleles. Hindcast, current and forecast ecological niche models demonstrate temporally changing degrees of overlap between the geographic range of Q. lyrata and Q. bicolor and suggest higher hybridization potential in the future. These findings offer mixed support for the CMH while underscoring the evolutionary relevance of introgression in shaping genetic landscapes at range margins with significant implications for conservation.

Molecular Ecology↗

USGS2025

Improved ground-truthing and benthic habitat characterization with machine learning models and 3D photogrammetry

Benthic mapping relies on a range of methods to ground truth remotely sensed data to map physical and biotic features. Traditional methods are labor-intensive and time-consuming with limited scalability. Autonomous underwater vehicles (AUVs) and remote operated vehicles (ROVs) can collect high volumes of quality data but require automated processing routines and pose other logistic challenges. This paper explores the automated use of multiple machine learning (ML) models to detect and delineate benthic habitat components from structure-from-motion (SfM) orthomosaics. Overlapping AUV photos were processed into high-resolution, seamless orthomosaics for a portion of the Lake Michigan lakebed. ML models were trained to delineate rocks and live mussels and subsequently applied to the SfM orthomosaics. Results demonstrate that a robust pipeline with SfM and ML models is an effective approach to efficiently, accurately, and comprehensively map benthic habitats.

Lake Michigan↗

USGS2025

An evaluation of the effects of different deicing salt application rates on three watersheds in Essex County, New York

The U.S. Geological Survey, in cooperation with the New York State Department of Transportation, evaluated the effects of different deicing salt application rates on surface water, groundwater, and highway runoff quality near State highways in northern New York. Three reaches of State highways were tested with different deicing treatments between October 2019 and November 2022: a salt-sand mixture (Treatment A), a salt mixture applied at a lower rate (Treatment B), and a control mixture consistent with typical deicing salt amounts and application rates. Data on pavement conditions and the quality of surface water, highway runoff, and groundwater were collected. Surface electromagnetic data were also collected. Surface-water and groundwater quality downgradient from the State highways were compared with water quality at upgradient locations. The percentage of snow or ice coverage was used to evaluate the effectiveness of the salt applications. This report provides an overview of the transport of deicing salt. The Treatment B watershed had deicing mixture applied more frequently than other highway reaches, which caused it to have the highest annual total chloride application. Despite differences in chloride application, flow-weighted mean chloride concentrations in highway runoff were comparable across treatments. Chloride concentrations were elevated in surface water and groundwater downgradient from highways relative to chloride concentrations upgradient from highways. A chloride mass balance, calculated for one treatment watershed, indicated that groundwater affected by legacy deicing practices may be contributing additional chloride to surface water. Spatial patterns from electromagnetic surveys show a shallow saline plume alongside the highway in that area. Differences in winter severity and pavement-surface conditions drove deicing salt applications in the treatment areas. This study found that several factors affect chloride loads in the watersheds, including variable winter conditions, adaptive snow and ice management, legacy management practices, and area-specific aquifer and groundwater conditions.

New York↗

USGS2025

Hosts, pathogens and hot ponds: Thermal mean and variability contribute to spatial patterns of chytrid infection

Temperature is a primary driver of heterogeneity in host–pathogen dynamics and understanding how patch-scale temperature affects landscape-scale patterns of pathogen infection is key to effective monitoring and management. In field studies, both temperature variability and mean temperature are often related to infection of ectothermic animals by fungal pathogens, and although these factors vary spatiotemporally, their contributions to infection outcomes are rarely decomposed into spatial and temporal components. We studied how patch-scale thermal conditions (mean and variability) affect infection of eastern newts Notophthalmus viridescens by Batrachochytrium dendrobatidis ( Bd ), with a special focus on disentangling spatial versus temporal contributions of thermal conditions to infection outcomes. We measured in situtemperature and Bd infection across 20 ponds in two years in southeastern Wisconsin, USA to 1) understand thermal mediation of infection and 2) quantify whether seasonal and/or among-site variation in thermal conditions drive heterogeneity in host–pathogen interactions. In our system, thermal mean and variability covaried tightly, necessitating the creation of a single index to capture both components. We found that 1) this index of thermal mean and variability was strongly and nonlinearly related to Bd infection and 2) differences among patches in thermal conditions drove this relationship, highlighting that variation in patch-level conditions can drive heterogenous host–pathogen outcomes across landscapes. Our research collectively reveals insights about the importance of local, patch-level conditions for mediating disease risk at broader scales.

Wisconsin↗