Geology topics

Tamara M. Wood

Publications and source records attributed to Tamara M. Wood.

At least 37 records · Page 2Linked to original sources

USGS2012

Dispersal of larval suckers at the Williamson River Delta, Upper Klamath Lake, Oregon, 2006-09

An advection/diffusion modeling approach was used to simulate the transport of larval suckers from spawning areas in the Williamson River, through the newly restored Williamson River Delta, to Upper Klamath Lake. The density simulations spanned the years of phased restoration, from 2006/2007 prior to any levee breaching, to 2008 when the northern part of the delta was reconnected to the lake, and 2009 when levees on both sides of the delta had been breached. Model simulation results from all four years were compared to field data using rank correlation. Spearman ρ correlation coefficients were usually significant and in the range 0.30 to 0.60, providing moderately strong validation of the model. The correlation coefficients varied with fish size class in a way that suggested that the model best described the distribution of smaller fish near the Williamson River channel, and larger fish away from the channel. When Lost River and shortnose/Klamath largescale suckers were simulated independently, the correlation results suggested that the model better described the transport and dispersal of the latter species. The incorporation of night-time-only drift behavior in the Williamson River channel neither improved nor degraded correlations with field data. The model showed that advection by currents is an important factor in larval dispersal.

Oregon↗

USGS2012

Spatial and temporal dynamics of cyanotoxins and their relation to other water quality variables in Upper Klamath Lake, Oregon, 2007-09

Phytoplankton blooms dominated by cyanobacteria that occur annually in hypereutrophic Upper Klamath Lake, Oregon, produce microcystins at concentrations that may contribute to the decline in populations of endangered Lost River ( Deltistes luxatus ) and shortnose ( Chasmistes brevirostris ) suckers. During 2007–09, water samples were collected from Upper Klamath Lake to determine the presence and concentrations of microcystins and cylindrospermopsins and to relate the spatial and temporal occurrences of microcystins to water quality and other environmental variables. Samples were analyzed for intracellular (particulate) and extracellular (dissolved) microcystins and cylindrospermopsins using enzyme-linked immunosorbent assays (ELISA). Samples contained the highest and most variable concentrations of microcystins in 2009, the year in which an earlier and heavier Aphanizomenon flos-aquae -dominated phytoplankton bloom occurred. Concentrations were lowest in 2008 when the bloom was lighter, overall, and delayed by nearly 1 month. Microcystins occurred primarily in dissolved and large (> 63 μm) particulate forms in all years of the study, and overall, concentrations were highest at MDT (the deepest site in the study) and HDB, although HDB was sampled only in 2007 and MDT was not sampled in 2008. Comparisons among daily median total microcystin concentrations; chlorophyll a concentrations; total, dissolved, and particulate nutrient concentrations; and nutrient ratios measured in 2009 and between 2007 and 2009 indicate that microcystin concentrations generally increase following the decline of the first A. flos-aquae -dominated bloom of each season in response to an increase in bioavailable nitrogen and phosphorus. Nitrogen fixation by A. flos-aquae early in the sample season appears to provide new nitrogen for growth of toxigenic Microcystis aeruginosa , whereas, later in the season, these species appear to co-exist. Understanding the ecological interactions between these species may be important for predicting periods of elevated cyanotoxin concentrations and has important implications for management of this lake.

Oregon↗

USGS2011

Distribution and habitat associations of radio-tagged adult Lost River suckers and shortnose suckers in Upper Klamath Lake, Oregon

Radiotelemetry was used to investigate the summer distribution and diel habitat associations of endangered adult Lost River suckers Deltistes luxatus and shortnose suckers Chasmistes brevirostris in northern Upper Klamath Lake, Oregon. From 2002 to 2004, Lost River and shortnose suckers were tracked by boat, and water depth and water quality were measured at each fish location. A series of water quality monitors were deployed in northern Upper Klamath Lake to provide temporal information on ambient temperature, pH, and dissolved oxygen, and water samples were collected to assess chlorophyll a concentration. Suckers moved into northern Upper Klamath Lake during June and began to leave in late September each year. Kernel density estimates revealed differences in the distribution in the northern portion of Upper Klamath Lake in 2002 and 2004. In 2003, however, both Lost River and shortnose suckers were commonly located within and offshore from Pelican Bay, a shallow (1.0-2.0 m), groundwater-influenced area of Upper Klamath Lake. This was especially obvious beginning in late July of 2003, concurrent with reduced dissolved oxygen levels (<4.0 mg/L) in the northern portion of Upper Klamath Lake that resulted from a die-off of the cyanobacterium Aphanizomenon flos-aquae . Both Lost River and shortnose suckers were generally associated with water depths greater than the mean depth (2.8 m) of northern Upper Klamath Lake. Evidence ratios did not suggest diel differences in depth, temperature, dissolved oxygen, or pH at sucker locations. Both Lost River and shortnose suckers generally occupied depths greater than 2.0 m, except when suckers sought refuge in Pelican Bay during periods of poor water quality. Despite the potential for increased avian predation, suckers appeared to benefit from moving into Pelican Bay rather than staying in areas where dissolved oxygen was low. Pelican Bay appears to be an important refugium and thus may be important for sucker conservation.

Oregon↗

USGS2011

Use of a two-dimensional hydrodynamic model to evaluate extreme flooding and transport of dissolved solids through Devils Lake and Stump Lake, North Dakota, 2006

The U.S. Geological Survey in cooperation with the North Dakota Department of Transportation, North Dakota State Water Commission, and U.S. Army Corps of Engineers, developed a two-dimensional hydrodynamic model of Devils Lake and Stump Lake, North Dakota to be used as a hydrologic tool for evaluating the effects of different inflow scenarios on water levels, circulation, and the transport of dissolved solids through the lake. The numerical model, UnTRIM, and data primarily collected during 2006 were used to develop and calibrate the Devils Lake model. Performance of the Devils Lake model was tested using 2009 data. The Devils Lake model was applied to evaluate the effects of an extreme flooding event on water levels and hydrological modifications within the lake on the transport of dissolved solids through Devils Lake and Stump Lake. For the 2006 calibration, simulated water levels in Devils Lake compared well with measured water levels. The maximum simulated water level at site 1 was within 0.13 feet of the maximum measured water level in the calibration, which gives reasonable confidence that the Devils Lake model is able to accurately simulate the maximum water level at site 1 for the extreme flooding scenario. The timing and direction of winddriven fluctuations in water levels on a short time scale (a few hours to a day) were reproduced well by the Devils Lake model. For this application, the Devils Lake model was not optimized for simulation of the current speed through bridge openings. In future applications, simulation of current speed through bridge openings could be improved by more accurate definition of the bathymetry and geometry of select areas in the model grid. As a test of the performance of the Devils Lake model, a simulation of 2009 conditions from April 1 through September 30, 2009 was performed. Overall, errors in inflow estimates affected the results for the 2009 simulation; however, for the rising phase of the lakes, the Devils Lake model accurately simulated the faster rate of rise in Devils Lake than in Stump Lake, and timing and direction of wind-driven fluctuations in water levels on a short time scale were reproduced well. To help the U.S. Army Corps of Engineers determine the elevation to which the protective embankment for the city of Devils Lake should be raised, an extreme flooding scenario based on an inflow of one-half the probable maximum flood was simulated. Under the conditions and assumptions of the extreme flooding scenario, the water level for both lakes reached a maximum water level around 1,461.9 feet above the National Geodetic Vertical Datum of 1929. One factor limiting the extent of pumping from the Devils Lake State Outlet is sulfate concentrations in West Bay. If sulfate concentrations can be reduced in West Bay, pumping from the Devils Lake State Outlet potentially can increase. The Devils Lake model was used to simulate the transport of dissolved solids using specific conductance data as a surrogate for sulfate. Because the transport of dissolved solids was not calibrated, results from the simulations were not actual expected concentrations. However, the effects of hydrological modifications on the transport of dissolved solids could be evaluated by comparing the effects of hydrological modifications relative to a baseline scenario in which no hydrological modifications were made. Four scenarios were simulated: (1) baseline condition (no hydrological modification), (2) diversion of Channel A, (3) reduction of the area of water exchange between Main Bay and East Bay, and (4) combination of scenarios 2 and 3. Relative to scenario 1, mean concentrations in West Bay for scenarios 2 and 4 were reduced by approximately 9 percent. Given that there is no change in concentration for scenario 3, but about a 9-percent reduction in concentration for scenario 4, the diversion of Channel A was the only hydrologic modification that appeared to have the potential to reduce sulfate c

Scientific Investigations Report↗

USGS2010

Water-Quality Data from Upper Klamath and Agency Lakes, Oregon, 2007-08

Significant Findings The U.S. Geological Survey Upper Klamath Lake water-quality monitoring program collected data from multiparameter continuous water-quality monitors, weekly water-quality samples, and meteorological stations during May-November 2007 and 2008. The results of these measurements and sample analyses are presented in this report for 29 stations on Upper Klamath Lake and 2 stations on Agency Lake, as well as quality-assurance data for the water-quality samples. Some of the significant findings from 2007 and 2008 are listed below. In 2007-08, ammonia concentrations were at or near the detection limit at all stations during the second week in June, after which they began to increase, with peak concentrations occurring from July through November. The concentration of un-ionized ammonia, which can be toxic to aquatic life, first began to increase in mid-June and peaked in July or August at most sites. Concentrations of un-ionized ammonia measured in the Upper Klamath Lake in 2007-08 did not reach concentrations that would have been potentially lethal to suckers. Samples collected for the analysis of dissolved organic carbon (DOC) late in the 2007 season showed no evidence of an increase in DOC subsequent to the breaching of the Williamson River Delta levees on October 30. In 2007-08, the lakewide daily median of dissolved oxygen concentration began to increase in early June, and peaked in mid- to late June. The lakewide daily median pH began to increase from early June and peaked in late June (2007) or early July (2008). Lakewide daily median pH slowly decreased during the rest of both seasons. The 2007 lakewide daily median specific conductance values first peaked on July 1, coincident with a peak in dissolved oxygen concentration and pH, followed by a decrease through mid-July. Specific conductance then remained relatively stable until mid-October when a sharp increase began that continued until the end of the season. Lakewide specific conductance values for 2008 steadily increased through the season to a maximum in late September. Lakewide daily median temperatures in both years began to increase during the beginning of June and peaked in July. These temperatures persisted until late August to early September when a gradual decrease occurred. In 2007-08, water-quality conditions monitored at the Agency Lake northern and southern stations were similar to those in Klamath Lake.

Open-File Report↗

USGS2010

Empirical models of wind conditions on Upper Klamath Lake, Oregon

Upper Klamath Lake is a large (230 square kilometers), shallow (mean depth 2.8 meters at full pool) lake in southern Oregon. Lake circulation patterns are driven largely by wind, and the resulting currents affect the water quality and ecology of the lake. To support hydrodynamic modeling of the lake and statistical investigations of the relation between wind and lake water-quality measurements, the U.S. Geological Survey has monitored wind conditions along the lakeshore and at floating raft sites in the middle of the lake since 2005. In order to make the existing wind archive more useful, this report summarizes the development of empirical wind models that serve two purposes: (1) to fill short (on the order of hours or days) wind data gaps at raft sites in the middle of the lake, and (2) to reconstruct, on a daily basis, over periods of months to years, historical wind conditions at U.S. Geological Survey sites prior to 2005. Empirical wind models based on Artificial Neural Network (ANN) and Multivariate-Adaptive Regressive Splines (MARS) algorithms were compared. ANNs were better suited to simulating the 10-minute wind data that are the dependent variables of the gap-filling models, but the simpler MARS algorithm may be adequate to accurately simulate the daily wind data that are the dependent variables of the historical wind models. To further test the accuracy of the gap-filling models, the resulting simulated winds were used to force the hydrodynamic model of the lake, and the resulting simulated currents were compared to measurements from an acoustic Doppler current profiler. The error statistics indicated that the simulation of currents was degraded as compared to when the model was forced with observed winds, but probably is adequate for short gaps in the data of a few days or less. Transport seems to be less affected by the use of the simulated winds in place of observed winds. The simulated tracer concentration was similar between model results when simulated winds were used to force the model, and when observed winds were used to force the model, and differences between the two results did not accumulate over time.

Scientific Investigations Report↗

USGS2010

Use of acoustic backscatter and vertical velocity to estimate concentration and dynamics of suspended solids in Upper Klamath Lake, south-central Oregon: Implications for Aphanizomenon flos-aquae

Vertical velocity and acoustic backscatter measurements by acoustic Doppler current profilers were used to determine seasonal, subseasonal (days to weeks), and diel variation in suspended solids in a freshwater lake where massive cyanobacterial blooms occur annually. During the growing season, the suspended material in the lake is dominated by the buoyancy-regulating cyanobacteria, Aphanizomenon flos-aquae . Measured variables (water velocity, relative backscatter [ RB ], wind speed, and air and water temperatures) were averaged over the deployment season at each sample time of day to determine average diel cycles. Phase shifts between diel cycles in RB and diel cycles in wind speed, vertical water temperature differences (Δ T° ), and horizontal current speeds were found by determining the lead or lag that maximized the linear correlation between the respective diel cycles. Diel cycles in RB were more in phase with Δ T° cycles, and, to a lesser extent, wind cycles, than to water current cycles but were out of phase with the cycle that would be expected if the vertical movement of buoyant cyanobacteria colonies was controlled primarily by light. Clear evidence of a diel cycle in vertical velocity was found only at the two deepest sites in the lake. Cycles of vertical velocity, where present, were out of phase with expected vertical motion of cyanobacterial colonies based on the theoretical cycle for light-driven vertical movement. This suggests that water column stability and turbulence were more important factors in controlling vertical distribution of colonies than light. Variations at subseasonal time scales were determined by filtering data to pass periods between 1.2 and 15 days. At subseasonal time scales, correlations between RB and currents or air temperature were consistent with increased concentration of cyanobacterial colonies near the surface when water column stability increased (higher air temperatures or weaker currents) and dispersal of colonies throughout the water column when the water column mixed more easily. RB was used to estimate suspended solids concentrations (SSC). Correlations of depth-integrated SSC with currents or air temperatures suggest that depth-integrated water column mass decreased under conditions of greater water column stability and weaker currents. Results suggest that the use of measured vertical velocity and acoustic backscatter as a surrogate for suspended material has the potential to contribute significant additional insight into dynamics of Aphanizomenon flos-aquae colonies in Upper Klamath Lake, south-central Oregon.

Oregon↗

USGS2009

Preliminary study of the effect of the proposed Long Lake Valley project operation on the transport of larval suckers in Upper Klamath Lake, Oregon

A hydrodynamic model of Upper Klamath and Agency Lakes, Oregon, was used to explore the effects of the operation of proposed offstream storage at Long Lake Valley on transport of larval suckers through the Upper Klamath and Agency Lakes system during May and June, when larval fish leave spawning sites in the Williamson River and springs along the eastern shoreline and become entrained in lake currents. A range in hydrologic conditions was considered, including historically high and low outflows and inflows, lake elevations, and the operation of pumps between Upper Klamath Lake and storage in Long Lake Valley. Two wind-forcing scenarios were considered: one dominated by moderate prevailing winds and another dominated by a strong reversal of winds from the prevailing direction. On the basis of 24 model simulations that used all combinations of hydrology and wind forcing, as well as With Project and No Action scenarios, it was determined that the biggest effect of project operations on larval transport was the result of alterations in project management of the elevation in Upper Klamath Lake and the outflow at the Link River and A Canal, rather than the result of pumping operations. This was because, during the spring time period of interest, the amount of water pumped between Upper Klamath Lake and Long Lake Valley was generally small. The dominant effect was that an increase in lake elevation would result in more larvae in the Williamson River delta and in Agency Lake, an effect that was enhanced under conditions of wind reversal. A decrease in lake elevation accompanied by an increase in the outflow at the Link River had the opposite effect on larval concentration and residence time.

Oregon↗

USGS2009

Water Quality of a Drained Wetland, Caledonia Marsh on Upper Klamath Lake, Oregon, after Flooding in 2006

The unexpected inundation of Caledonia Marsh, a previously drained wetland adjacent to Upper Klamath Lake, Oregon, provided an opportunity to observe nutrient release from sediments into the water column of the flooded area and the resulting algal growth. Three sites, with differing proximity to the levee breach that reconnected the area to Upper Klamath Lake, were selected for water sample collection in the marsh. Chlorophyll a concentrations (an indicator of algal biomass) were lowest and dissolved nutrient concentrations were highest at the site farthest from the breach. At the site where chlorophyll a concentrations were lowest, dissolved organic carbon concentrations were highest, and the presence of tannic compounds was indicated by the dark brown color of the water. Both DOC and specific conductance was higher at the site farthest from the breach, which indicated less mixing with Upper Klamath Lake water at that site. Dissolved oxygen concentrations and pH were lowest at the beginning of the sampling period at the site farthest from the levee breach, coincident with the lowest algal growth. Phosphorus concentrations measured in the flooded Caledonia Marsh were greater than median concentrations in Upper Klamath Lake, indicating that phosphorus likely was released from the previously drained wetland soils of the marsh when they were flooded. However, a proportional increase in algal biomass was not measured either in the marsh or in the adjacent bay of the lake. Nitrogen to phosphorus ratios indicated that phosphorus was not limiting to algal growth at the marsh sites, and possibly was not limiting in the adjacent bay either. In terms of nutrient dynamics, wetlands normally function as nutrient sinks. In contrast, the drained wetlands around Upper Klamath Lake cannot be expected to provide that function in the short term after being flooded and may, in fact, be a source of nutrients to the lake instead. The consequences for algal growth in the lake, however, seem to be small.

Scientific Investigations Report↗

USGS2008

Water Quality Conditions in Upper Klamath and Agency Lakes, Oregon, 2005

During June-October 2005, water quality data were collected from Upper Klamath and Agency Lakes in Oregon, and meteorological data were collected around and within Upper Klamath Lake. Data recorded at two continuous water quality monitors in Agency Lake showed similar temperature patterns throughout the field season, but data recorded at the northern site showed more day-to-day variability for dissolved oxygen concentration and saturation after late June and more day-to-day variability for pH and specific conductance values after mid-July. Data recorded from the northern and southern parts of Agency Lake showed more comparable day-to-day variability in dissolved oxygen concentrations and pH from September through the end of the monitoring period. For Upper Klamath Lake, seasonal (late July through early August) lows of dissolved oxygen concentrations and saturation were coincident with a seasonal low of pH values and seasonal highs of ammonia and orthophosphate concentrations, specific conductance values, and water temperatures. Patterns in these parameters, excluding water temperature, were associated with bloom dynamics of the cyanobacterium (blue-green alga) Aphanizomenon flos-aquae in Upper Klamath Lake. In Upper Klamath Lake, water temperature in excess of 28 degrees Celsius (a high stress threshold for Upper Klamath Lake suckers) was recorded only once at one site during the field season. Large areas of Upper Klamath Lake had periods of dissolved oxygen concentration of less than 4 milligrams per liter and pH value greater than 9.7, but these conditions were not persistent throughout days at most sites. Dissolved oxygen concentrations in Upper Klamath Lake on time scales of days and months appeared to be influenced, in part, by bathymetry and prevailing current flow patterns. Diel patterns of water column stratification were evident, even at the deepest sites. This diel pattern of stratification was attributable to diel wind speed patterns and the shallow nature of most of Upper Klamath Lake. Timing of the daily extreme values of dissolved oxygen concentration, pH, and water temperature was less distinct with increased water column depth. Chlorophyll a concentrations varied spatially and temporally throughout Upper Klamath Lake. Location greatly affected algal concentrations, in turn affecting nutrient and dissolved oxygen concentrations - some of the highest chlorophyll a concentrations were associated with the lowest dissolved oxygen concentrations and the highest un-ionized ammonia concentrations. The occurrence of the low dissolved oxygen and high un-ionized ammonia concentrations coincided with a decline in algae resulting from cell death, as measured by concentrations of chlorophyll a. Dissolved oxygen production rates in experiments were as high as 1.47 milligrams of oxygen per liter per hour, and consumption rates were as much as -0.73 milligrams of oxygen per liter per hour. Dissolved oxygen consumption rates measured in this study were comparable to those measured in a 2002 Upper Klamath Lake study, and a higher rate of dissolved oxygen consumption was recorded in dark bottles positioned higher in the water column. Data, though inconclusive, indicated that a decreasing trend of dissolved oxygen productivity through July could have contributed to the decreasing dissolved oxygen concentrations and percent saturation recorded in Upper Klamath Lake during this time. Phytoplankton self-shading was evident from a general inverse relation between depth of photic zone and chlorophyll a concentrations. This shading caused net dissolved oxygen consumption during daylight hours in lower parts of the water column that would otherwise have been in the photic zone. Meteorological data collected in and around Upper Klamath Lake showed that winds were likely to come from a broad range of westerly directions in the northern one-third of the lake, but tended to come from a narrow range of northwesterly directions

Scientific Investigations Report↗

USGS2008

Modeling hydrodynamics and heat transport in Upper Klamath Lake, Oregon, and implications for water quality

The three-dimensional numerical model UnTRIM was used to model hydrodynamics and heat transport in Upper Klamath Lake, Oregon, between mid-June and mid-September in 2005 and between mid-May and mid-October in 2006. Data from as many as six meteorological stations were used to generate a spatially interpolated wind field to use as a forcing function. Solar radiation, air temperature, and relative humidity data all were available at one or more sites. In general, because the available data for all inflows and outflows did not adequately close the water budget as calculated from lake elevation and stage-capacity information, a residual inflow or outflow was used to assure closure of the water budget. Data used for calibration in 2005 included lake elevation at 3 water-level gages around the lake, water currents at 5 Acoustic Doppler Current Profiler (ADCP) sites, and temperature at 16 water-quality monitoring locations. The calibrated model accurately simulated the fluctuations of the surface of the lake caused by daily wind patterns. The use of a spatially variable surface wind interpolated from two sites on the lake and four sites on the shoreline generally resulted in more accurate simulation of the currents than the use of a spatially invariant surface wind as observed at only one site on the lake. The simulation of currents was most accurate at the deepest site (ADCP1, where the velocities were highest) using a spatially variable surface wind; the mean error (ME) and root mean square error (RMSE) for the depth-averaged speed over a 37-day simulation from July 26 to August 31, 2005, were 0.50 centimeter per second (cm/s) and 3.08 cm/s, respectively. Simulated currents at the remaining sites were less accurate and, in general, underestimated the measured currents. The maximum errors in simulated currents were at a site near the southern end of the trench at the mouth of Howard Bay (ADCP7), where the ME and RMSE in the depth-averaged speed were 3.02 and 4.38 cm/s, respectively. The range in ME of the temperature simulations over the same period was –0.94 to 0.73 degrees Celsius (°C), and the RMSE ranged from 0.43 to 1.12°C. The model adequately simulated periods of stratification in the deep trench when complete mixing did not occur for several days at a time. The model was validated using boundary conditions and forcing functions from 2006 without changing any calibration parameters. A spatially variable wind was used. Data for the model validation periods in 2006 included lake elevation at 4 gages around the lake, currents collected at 2 ADCP sites, and temperature collected at 21 water-quality monitoring locations. Errors generally were larger than in 2005. ME and RMSE in the simulated velocity at ADCP1 were 2.30 cm/s and 3.88 cm/s, respectively, for the same 37-day simulation over which errors were computed for 2005. The ME in temperature over the same period ranged from –0.56 to 1.5°C and the RMSE ranged from 0.41 to 1.86°C. Numerical experiments with conservative tracers were used to demonstrate the prevailing clockwise circulation patterns in the lake, and to show the influence of water from the deep trench located along the western shoreline of the lake on fish habitat in the northern part of the lake. Because water exiting the trench is split into two pathways, the numerical experiments indicate that bottom water from the trench has a stronger influence on water quality in the northern part of the lake, and surface water from the trench has a stronger influence on the southern part of the lake. This may be part of the explanation for why episodes of low dissolved oxygen tend to be more severe in the northern than in the southern part of the lake.

Oregon↗

USGS2008

Water Quality Conditions in Upper Klamath and Agency Lakes, Oregon, 2006

The U.S. Geological Survey Upper Klamath Lake water quality monitoring program gathered information from multiparameter continuous water quality monitors, physical water samples, dissolved oxygen production and consumption experiments, and meteorological stations during the June-October 2006 field season. The 2006 study area included Agency Lake and all of Upper Klamath Lake. Seasonal patterns in water quality were similar to those observed in 2005, the first year of the monitoring program, and were closely related to bloom dynamics of the cyanobacterium (blue-green alga) Aphanizomenon flos-aquae (AFA) in the two lakes. High dissolved oxygen and pH conditions in both lakes before the bloom declined in July, which coincided with seasonal high temperatures and resulted in seasonal lows in dissolved oxygen and decreased pH. Dissolved oxygen and pH in Upper Klamath and Agency Lakes increased again after the bloom recovered. Seasonal low dissolved oxygen and decreased pH coincided with seasonal highs in ammonia and orthophosphate concentrations. Seasonal maximum daily average temperatures were higher and minimum dissolved oxygen concentrations were lower in 2006 than in 2005. Conditions potentially harmful to fish were influenced by seasonal patterns in bloom dynamics and bathymetry. Potentially harmful low dissolved oxygen and high un-ionized ammonia concentrations occurred mostly at the deepest sites in the Upper Klamath Lake during late July, coincident with a bloom decline. Potentially harmful pH conditions occurred mostly at sites outside the deepest parts of the lake in July and September, coincident with a heavy bloom. Instances of possible gas bubble formation, inferred from dissolved oxygen data, were estimated to occur frequently in shallow areas of Upper Klamath and Agency Lakes simultaneously with potentially harmful pH conditions. Comparison of the data from monitors in nearshore areas and monitors near the surface of the water column in the open waters of Upper Klamath Lake revealed few differences in water quality dynamics. Median daily temperatures were higher in nearshore areas, and dissolved oxygen concentrations were periodically higher as well during periods of high AFA bloom. Differences between the two areas in water quality conditions potentially harmful to fish were not statistically significant (p < 0.05). Chlorophyll a concentrations varied temporally and spatially throughout Upper Klamath Lake. Chlorophyll a concentrations indicated an algal bloom in late June and early July that was followed by an algae bloom decline in late July and early August and a subsequent recovery in mid-August. Sites in the deepest part of the lake, where some of the highest chlorophyll a concentrations were observed, were the same sites where the lowest dissolved oxygen concentrations and the highest un-ionized ammonia concentrations were recorded during the bloom decline, indicating cell senescence. Total phosphorus concentrations limited the initial algal bloom in late June and early July. The rate of net dissolved oxygen production (that is, production in excess of community respiration) and consumption (due to community respiration) in the lake water column as measured in light and dark bottles, respectively, ranged from 2.79 to -2.14 milligrams of oxygen per liter per hour. Net production rate generally correlated positively with chlorophyll a concentration, except episodically at a few sites where high chlorophyll a concentrations resulted in self-shading that inhibited photosynthesis. The depth of photic zone was inversely correlated with chlorophyll a concentration. Calculations of a 24-hour change in dissolved oxygen concentration indicated that oxygen-consuming processes predominated at the deep trench sites and oxygen-producing processes predominated at the shallow sites. In addition, calculations of the 24-hour change in dissolved oxygen indicate that oxygen-consuming processes in the water column di

Scientific Investigations Report↗

USGS2007

Quantifying the benthic source of nutrients to the water column of Upper Klamath Lake, Oregon

Executive Summary Five sampling trips were coordinated in April, May and August 2006, and May and July 2007 to sample the water column and benthos of Upper Klamath Lake, OR (Fig. 1; Table 1), before, during and after the annual cyanophyte bloom of Aphanizomenon flos-aquae (AFA). A pore-water profiler was designed and fabricated to obtain the first high-resolution (centimeter-scale) estimates of the vertical concentration gradients for diffusive-flux determinations. Estimates based on molecular diffusion may underestimate benthic flux because solute transport across the sediment-water interface can be enhanced by processes including bioturbation, bioirrigation and ground-water advection. Water-column and benthic samples were also collected to help interpret spatial and temporal trends in diffusive-flux estimates. Data from these samples complement geochemical analyses of bottom-sediments taken from Upper Klamath Lake (UKL) in 2005. This ongoing study provides information necessary for developing process-interdependent solute-transport models for the watershed (that is, models integrating physical, geochemical and biological processes), and supports efforts to evaluate remediation or load-allocation strategies. To augment studies funded by the U.S. Bureau of Reclamation (USBR), the Department of Interior supported an additional full deployment of pore-water profilers in July 2007, during the summer AFA bloom. Results from this recent field trip are not fully completed. Data not presented herein will be included in a subsequent publication, scheduled for March 2009.

Oregon↗

USGS2007

Water velocity and suspended solids measurements by in-situ instruments in Upper Klamath Lake, Oregon

The U. S. Geological Survey conducted hydrodynamic measurements in Upper Klamath Lake during four summer seasons (approximately mid-June to mid-September) during 2003 to 2006. Measurements included water current profiles made by acoustic Doppler current profilers at a number of fixed locations in the lake during all four years as well as from a moving boat during 2005 and 2006. Measurements of size distribution of suspended material were made at four locations in the lake during 2004-2006. Raw (unfiltered) data are presented as time series of measurements. In addition, water-velocity data have been filtered to remove wind-induced variations with periods less than thirty hours from the measurements. Bar graphs of horizontal and vertical water speed and acoustic backscatter have been generated to discern diurnal variations, especially as they relate to wind patterns over the lake. Mean speeds of the horizontal currents in the lake range between about 3.5 to 15 cm/s with the higher speeds at the deep locations in the trench on the west side of the lake. Current directions generally conform to the lake’s bathymetry contours and the water circulation pattern is usually in a clockwise direction around the lake as established by the prevailing north to northwesterly surface winds in the region. Diurnal patterns in horizontal currents probably relate to diurnal wind patterns with minimum wind speeds near noon and maximum wind speeds near 2100. Diurnal variations in vertical velocities do not appear to be related to wind patterns; they do appear to be related to expected patterns of vertical migration of Aphanizomenon flos aquae , (AFA) the predominant species of blue-green algae in the lake. Similarly, diurnal variations in acoustic backscatter, especially near the lake’s surface, are probably related to the vertical migration of AFA.

Oregon↗

USGS2006

Water-quality conditions in Upper Klamath Lake, Oregon, 2002-04

Eleven (2002) to 14 (2003 and 2004) continuous water-quality monitors that measured pH, dissolved oxygen, temperature, and specific conductance, were placed in Upper Klamath Lake to support a telemetry tracking study of endangered adult shortnose and Lost River suckers. Samples for the analysis of chlorophyll a and nutrients were collected at a subset of the water-quality monitor sites in each year. The seasonal pattern in the occurrence of supersaturated dissolved oxygen concentrations and high pH associated with photosynthetic activity, as well as the undersaturated dissolved oxygen concentrations associated with oxygen demand through respiration and decay in excess of photosynthetic production, were well described by the dynamics of the massive blooms of Aphanizomenon flos aquae (AFA) that occur each year. Data from the continuous monitors provided a means to quantify the occurrence, duration, and spatial extent of water-quality conditions potentially harmful to fish (dissolved- oxygen concentration less than 4 milligrams per liter, pH greater than 9.7, and temperature greater than 28 degrees Celsius) in the northern part of the lake, where the preferred adult sucker habitat is found. There were few observations of temperature greater than 28 degrees Celsius, suggesting that temperature is not a significant source of chronic stress to fish, although its role in the spread of disease is harder to define. Observations of pH greater than 9.7 were common during times when the AFA bloom was growing rapidly, so pH may be a source of chronic stress to fish. Dissolved oxygen concentrations less than 4 milligrams per liter were common in all 3 years at the deeper sites, in the lower part of the water column and for short periods during the day. Less common were instances of widespread low dissolved oxygen, throughout the water column and persisting through the entire day, but this was the character of a severe low dissolved oxygen event (LDOE) that culminated in the start of a fish die-off in 2003. Documented evidence indicates that LDOEs played a role in three fish die-offs in the mid-1990s as well. In the historical context of 15 years of climate and water-quality data, 3 out of 4 of the recent fish die-off years, 1996, 1997, and 2003, were characterized by low winds and high temperatures in July or August coincident with the start of the die-off. High temperatures accelerate the oxygen demanding processes that lead to a LDOE. The role of low winds remains inconclusive, but it could include the development of stratification in the water column and/or the alteration of the wind-driven circulation pattern. At a site centrally located in the study area, die-off years could be successfully identified in the historical data by screening for water characterized by exceptionally low chlorophyll a concentration, exceptionally low dissolved oxygen concentration throughout the water column (not just near the bottom), and exceptionally high ammonia concentration and water temperature, just prior to or coincident with the start of a fish die-off. These conditions indicate that a severe decline in the AFA bloom and conversion of most of the organic matter into inorganic form had taken place.

Scientific Investigations Report↗

USGS2004

Effect of water-column pH on sediment-phosphorus release rates in Upper Klamath Lake, Oregon, 2001

Sediment-phosphorus release rates as a function of pH were determined in laboratory experiments for sediment and water samples collected from Shoalwater Bay in Upper Klamath Lake, Oregon, in 2001. Aerial release rates for a stable sediment/water interface that is representative of the sediment surface area to water column volume ratio (1:3) observed in the lake and volumetric release rates for resuspended sediment events were determined at three different pH values (8.1, 9.2, 10.2). Ambient water column pH (8.1) was maintained by sparging study columns with atmospheric air. Elevation of the water column pH to 9.2 was achieved through the removal of dissolved carbon dioxide by sparging with carbon dioxide-reduced air, partially simulating water chemistry changes that occur during algal photosynthesis. Further elevation of the pH to 10.2 was achieved by the addition of sodium hydroxide, which doubled average alkalinities in the study columns from about 1 to 2 milliequivalents per liter. Upper Klamath Lake sediments collected from the lake bottom and then placed in contact with lake water, either at a stable sediment/water interface or by resuspension, exhibited an initial capacity to take up soluble reactive phosphorus (SRP) from the water column rather than release phosphorus to the water column. At a higher pH this initial uptake of phosphorus is slowed, but not stopped. This initial phase was followed by a reversal in which the sediments began to release SRP back into the water column. The release rate of phosphorus 30 to 40 days after suspension of sediments in the columns was 0.5 mg/L/day (micrograms per liter per day) at pH 8, and 0.9 mg/L/day at pH 10, indicating that the higher pH increased the rate of phosphorus release by a factor of about two. The highest determined rate of release was approximately 10% (percent) of the rate required to explain the annual internal loading to Upper Klamath Lake from the sediments as calculated from a lake-wide mass balance and observed in total phosphorus data collected at individual locations.

Water-Resources Investigations Report↗

USGS2001

Herbicide use in the management of roadside vegetation, western Oregon, 1999-2000; effects on the water quality of nearby streams

The Oregon Department of Transportation (ODOT) uses the herbicides Krovar (active ingredients diuron and bromacil), Oust (active ingredient sulfometuron-methyl) and Roundup (active ingredient glyphosate) to control roadside vegetation. The purpose of this study was to assess whether the use of these herbicides could contribute to the load of herbicides carried by Oregon streams. In spring of 1999, three test plots were constructed on a road shoulder near a crossing of Bull Creek, a small stream near Colton, Oregon, in the Willamette Valley. Simulated rainfall of 0.3 in/hr was applied to the experimental plots 1 day, 1 week, and 2 weeks after herbicide application. The simulated rainfall experiments yielded an upper limit concentration of 1 mg/L (milligram per liter, or parts per million) glyphosate and diuron, and of a few hundred micrograms per liter (µg/L, or parts per billion) of sulfometuron-methyl in runoff from the roadside when rainfall was applied 24 hr after spraying. Concentrations in the ditch itself would be less under natural conditions because of dilution by drainage water from the entire contributing drainage area. The road shoulder was resprayed at the end of September, and data were collected from late October 1999 through early January 2000, during natural rainfall. Diuron concentrations in the direct runoff from the road shoulder ranged from 1 to 10 µg/L throughout the 3-month sampling period; during the period, concentrations in the roadside ditch decreased from about 10 µg/L in October to about 0.1 µg/L in January, indicating progressive dilution of the roadside herbicide runoff during the fall/winter rainy season. No diuron was detected in Bull Creek downstream from the drainage ditch. A mass balance calculation confirmed that the load to Bull Creek from the drainage ditch was too low to result in detectable concentrations in the stream during October to January. Sulfometuron-methyl concentrations in runoff from the road shoulder ranged from 0.1 to 1 µg/L throughout the 3-month sampling period, and in the drainage ditch decreased from about 1 µg/L in October and November to about 0.2 µg/L in January. It was never detected in Bull Creek. Bromacil concentrations were similar to those of diuron. Glyphosate was never detected in fall samples from the road shoulder, the drainage ditch, or the stream.

Water-Resources Investigations Report↗

USGS2001

Modeling water quality in the Tualatin River, Oregon, 1991-1997

The calibration of a model of flow, temperature, and water quality in the Tualatin River, Oregon, originally calibrated for the summers of 1991 through 1993, was extended to the summers of 1991 through 1997. The model is now calibrated for a total period of 42 months during the May through October periods of 7 hydrologically distinct years. Based on a modified version of the U.S. Army Corps of Engineers model CE-QUAL-W2, this model provides a good fit to the measured data for streamflow, water temperature, and water quality constituents such as chloride, ammonia, nitrate, total phosphorus, orthophosphate, phytoplankton, and dissolved oxygen. In particular, the model simulates ammonia concentrations and the effects of instream ammonia nitrification very well, which is critical to ongoing efforts to revise ammonia regulations for the Tualatin River. In addition, the model simulates the timing, duration, and relative size of algal blooms with sufficient accuracy to provide important insights for regulators and managers of this river.Efforts to limit the size of algal blooms through phosphorus control measures are apparent in the model simulations, which show this limitation on algal growth. Such measures are largely responsible for avoiding violations of the State of Oregon maximum pH standard of 8.5 in recent years, but they have not yet reduced algal biomass levels below the State of Oregon nuisance phytoplankton growth guideline of 15 ?g/L chlorophyll-a.Most of the dynamics of the instream dissolved oxygen concentrations are captured by the model. About half of the error in the simulated dissolved oxygen concentrations is directly attributable to error in the size of the simulated phytoplankton population. To achieve greater accuracy in simulating dissolved oxygen, therefore, it will be necessary to increase accuracy in the simulation of Tualatin River phytoplankton.Future efforts may include the introduction of multiple algal groups in the model. This model of the Tualatin River continues to be used as a quantitative tool to aid in the management of this important resource.

Oregon↗