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T. F. Cuffney

Publications and source records attributed to T. F. Cuffney.

10 recordsLinked to original sources
USGS2011

Multilevel regression models describing regional patterns of invertebrate and algal responses to urbanization across the USA

Multilevel hierarchical regression was used to examine regional patterns in the responses of benthic macroinvertebrates and algae to urbanization across 9 metropolitan areas of the conterminous USA. Linear regressions established that responses (intercepts and slopes) to urbanization of invertebrates and algae varied among metropolitan areas. Multilevel hierarchical regression models were able to explain these differences on the basis of region-scale predictors. Regional differences in the type of land cover (agriculture or forest) being converted to urban and climatic factors (precipitation and air temperature) accounted for the differences in the response of macroinvertebrates to urbanization based on ordination scores, total richness, Ephemeroptera, Plecoptera, Trichoptera richness, and average tolerance. Regional differences in climate and antecedent agriculture also accounted for differences in the responses of salt-tolerant diatoms, but differences in the responses of other diatom metrics (% eutraphenic, % sensitive, and % silt tolerant) were best explained by regional differences in soils (mean % clay soils). The effects of urbanization were most readily detected in regions where forest lands were being converted to urban land because agricultural development significantly degraded assemblages before urbanization and made detection of urban effects difficult. The effects of climatic factors (temperature, precipitation) on background conditions (biogeographic differences) and rates of response to urbanization were most apparent after accounting for the effects of agricultural development. The effects of climate and land cover on responses to urbanization provide strong evidence that monitoring, mitigation, and restoration efforts must be tailored for specific regions and that attainment goals (background conditions) may not be possible in regions with high levels of prior disturbance (e.g., agricultural development).

Journal of the North American Benthological Societ↗
USGS2010

Judging a brook by its cover: The relation between ecological condition of a stream and urban land cover in new England

The US Geological Survey conducted an urban land-use study in the New England Coastal Basins (NECB) area during 2001 to determine how urbanization relates to changes in the ecological condition of streams. Thirty sites were selected that differed in their level of watershed development (low to high). An urban intensity value was calculated for each site from 24 landscape variables. Together, these 30 values reppresented a gradient of urban intensity. Among various biological, chemical, and physical factors surveyed at each site, benthic invertebrate assemblages were sampled from stream riffles and also from multiple habitats along the length of the sampling reach. We use some of the NECB data to derive a four-variable urbanintensity index (NECB-UII), where each variable represents a distinct component of urbanization: increasing human presence, expanding infrastructure, landscape development, and riparian vegetation loss. Using the NECB-UII as a characterization of urbanization, we describe how landscape fragmentation occurs with urbanization and how changes in the invertebrate assemblages, represented by metrics of ecological condition, are related to urbanization. Metrics with a strong linear response included EPT taxa richness, percentage richness of non-insect taxa, and pollution-tolerance values. Additionally, we describe how these relations can help in estimating the expected condition of a stream for its level of urbanization, thereby establishing a baseline for evaluating possible affects from specific point-source stressors.

Northeastern Naturalist↗
USGS2009

Responses of benthic macroinvertebrates to urbanization in nine metropolitan areas of the conterminous United States

The effects of urbanization on benthic macroinvertebrates were investigated in nine metropolitan areas (Boston, MA; Raleigh, NC; Atlanta, GA; Birmingham, AL; Milwaukee–Green Bay, WI; Denver, CO; Dallas–Fort Worth, TX; Salt Lake City, UT; and Portland, OR) as a part of the U.S. Geological Survey National Water Quality Assessment Program. Several invertebrate metrics showed strong, linear responses to urbanization when forest or shrublands were developed. Responses were difficult to discern in areas where urbanization was occurring on agricultural lands because invertebrate assemblages were already severely degraded. There was no evidence that assemblages showed any initial resistance to urbanization. Ordination scores, EPT taxa richness, and the average tolerance of organisms were the best indicators of changes in assemblage condition at a site. Richness metrics were better indicators than abundance metrics, and qualitative samples were as good as quantitative samples. A common set of landscape variables (population density, housing density, developed landcover, impervious surface, and roads) were strongly correlated with urbanization and invertebrate responses in all non-agricultural areas. The instream environmental variables (hydrology, water chemistry, habitat, and temperature) that were strongly correlated with urbanization and invertebrate responses were influenced by environmental setting (e.g., dominant ecoregion) and varied widely among metropolitan areas. Multilevel hierarchical regression models were developed that predicted invertebrate responses using only two landcover variables—basinscale landcover (percentage of basin area in developed land) and regional-scale landcover (antecedent agricultural land).

Conference Paper↗
USGS2007

Quantifying urban intensity in drainage basins for assessing stream ecological conditions

Three investigations are underway, as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program, to study the relation between varying levels of urban intensity in drainage basins and in-stream water quality, measured by physical, chemical, and biological factors. These studies are being conducted in the vicinities of Boston (Massachusetts), Salt Lake City (Utah), and Birmingham (Alabama), areas where rapid urbanization is occurring. For each study, water quality will be sampled in approximately 30 drainage basins that represent a gradient of urban intensity. This paper focuses on the methods used to characterize and select the basins used in the studies. It presents a methodology for limiting the variability of natural landscape characteristics in the potential study drainage basins and for ranking the magnitude of human influence, or urbanization, based on land cover, infrastructure, and socioeconomic data in potential study basins. Basin characterization efforts associated with the Boston study are described for illustrative purposes.

Alabama, Massachusetts, Utah↗
USGS2007

Ambiguous taxa: Effects on the characterization and interpretation of invertebrate assemblages

Damaged and immature specimens often result in macroinvertebrate data that contain ambiguous parent-child pairs (i.e., abundances associated with multiple related levels of the taxonomic hierarchy such as Baetis pluto and the associated ambiguous parent Baetis sp.). The choice of method used to resolve ambiguous parent-child pairs may have a very large effect on the characterization of invertebrate assemblages and the interpretation of responses to environmental change because very large proportions of taxa richness (73-78%) and abundance (79-91%) can be associated with ambiguous parents. To address this issue, we examined 16 variations of 4 basic methods for resolving ambiguous taxa: RPKC (remove parent, keep child), MCWP (merge child with parent), RPMC (remove parent or merge child with parent depending on their abundances), and DPAC (distribute parents among children). The choice of method strongly affected assemblage structure, assemblage characteristics (e.g., metrics), and the ability to detect responses along environmental (urbanization) gradients. All methods except MCWP produced acceptable results when used consistently within a study. However, the assemblage characteristics (e.g., values of assemblage metrics) differed widely depending on the method used, and data should not be combined unless the methods used to resolve ambiguous taxa are well documented and are known to be comparable. The suitability of the methods was evaluated and compared on the basis of 13 criteria that considered conservation of taxa richness and abundance, consistency among samples, methods, and studies, and effects on the interpretation of the data. Methods RPMC and DPAC had the highest suitability scores regardless of whether ambiguous taxa were resolved for each sample separately or for a group of samples. Method MCWP gave consistently poor results. Methods MCWP and DPAC approximate the use of family-level identifications and operational taxonomic units (OTU), respectively. Our results suggest that restricting identifications to the family level is not a good method of resolving ambiguous taxa, whereas generating OTUs works well provided that documentation issues are addressed. ?? 2007 by The North American Benthological Society.

Journal of the North American Benthological Societ↗
USGS2005

Use of an urban intensity index to assess urban effects on streams in three contrasting environmental settings

To assess the effects of urbanization on assemblages (fish, invertebrate, and algal), physical habitat, and water chemistry, we investigated the relations among varying intensities of basin urbanization and stream ecology in three metropolitan areas: the humid northeastern United States around Boston, Massachusetts; the humid southeastern United States around Birmingham, Alabama; and the semiarid western United States around Salt Lake City, Utah. A consistent process was used to develop a multimetric urban intensity index (UII) based on locally important variables (land-use/land-cover, infrastructure, and socioeconomic variables) in each study area and a common urban intensity index (CUII) based on a subset of five variables common to all study areas. The UII was used to characterize 30 basins along an urban gradient in each metropolitan area. Study basins were located within a single ecoregion in each of the metropolitan areas. The UII, ecoregions, and site characteristics provided a method for limiting the variability of natural landscape characteristics while assessing the magnitude of urban effects. Conditions in Salt Lake City (semiarid climate and water diversions) and Birmingham (topography) required nesting sites within the same basin. The UII and CUII facilitated comparisons of aquatic assemblages response to urbanization across different environmental settings. ?? 2005 by the American Fisheries Society.

American Fisheries Society Symposium↗
USGS2000

Responses of physical, chemical, and biological indicators of water quality to a gradient of agricultural land use in the Yakima River Basin, Washington

The condition of 25 stream sites in the Yakima River Basin, Washington, were assessed by the U.S. Geological Survey's National Water-Quality Assessment Program. Multimetric condition indices were developed and used to rank sites on the basis of physical, chemical, and biological characteristics. These indices showed that sites in the Cascades and Eastern Cascades ecoregions were largely unimpaired. In contrast, all but two sites in the Columbia Basin ecoregion were impaired, some severely. Agriculture (nutrients and pesticides) was the primary factor associated with impairment and all impaired sites were characterized by multiple indicators of impairment. All indices of biological condition (fish, invertebrates, and algae) declined as agricultural intensity increased. The response exhibited by invertebrates and algae suggested a threshold response with conditions declining precipitously at relatively low levels of agricultural intensity and little response at moderate to high levels of agricultural intensity. This pattern of response suggests that the success of mitigation will vary depending upon where on the response curve the mitigation is undertaken. Because the form of the community condition response is critical to effective water-quality management, the National Water-Quality Assessment Program is conducting studies to examine the response of biota to gradients of land-use intensity and the relevance of these responses to water-quality management. These land-use gradient pilot studies will be conducted in several urban areas starting in 1999.

Environmental Monitoring and Assessment↗
USGS1997

Distribution of fish, benthic invertebrate, and algal communities in relation to physical and chemical conditions, Yakima River basin, Washington, 1990

Biological investigations were conducted in the Yakima River Basin, Washington, in conjunction with a pilot study for the U.S. Geological Survey's National Water-Quality Assessment Program. Ecological surveys were conducted at 25 sites in 1990 to (1) assess water-quality conditions based on fish, benthic invertebrate, and algal communities; (2) determine the hydrologic, habitat, and chemical factors that affect the distributions of these organisms; and (3) relate physical and chemical conditions to water quality. Results of these investigations showed that land uses and other associated human activities influenced the biological characteristics of streams and rivers and overall water-quality conditions. Fish communities of headwater streams in the Cascades and Eastern Cascades ecoregions of the Yakima River Basin were primarily composed of salmonids and sculpins, with cyprinids dominating in the rest of the basin. The most common of the 33 fish taxa collected were speckled dace, rainbow trout, and Paiute sculpin. The highest number of taxa (193) was found among the inverte- brates. Insects, particularly sensitive forms such as mayflies, stoneflies, and caddisflies (EPT--Ephemeroptera, Plecoptera, and Trichoptera fauna), formed the majority of the invertebrate communities of the Cascades and Eastern Cascades ecoregions. Diatoms dominated algal communities throughout the basin; 134 algal taxa were found on submerged rocks, but other stream microhabitats were not sampled as part of the study. Sensitive red algae and diatoms were predominant in the Cascades and Eastern Cascades ecoregions, whereas the abundance of eutrophic diatoms and green algae was large in the Columbia Basin ecoregion of the Yakima River Basin. Ordination of physical, chemical, and biological site characteristics indicated that elevation was the dominant factor accounting for the distribution of biota in the Yakima River Basin; agricultural intensity and stream size were of secondary importance. Ordination identified three site groups and three community types. Site groups consisted of (1) small streams of the Cascades and Eastern Cascades ecoregions, (2) small streams of the Columbia Basin ecoregions, and (3) large rivers of the Cascades and Columbia Basin ecoregions. The small streams of the Columbia Basin could be further subdivided into two groups--one where agricultural intensity was low and one where agricultural intensity was moderate to high. Dividing the basin into these three groups removed much of the influence of elevation and facilitated the analysis of land-use effects. Community types identified by ordination were (1) high elevation, cold-water communities associated with low agricultural intensity; (2) lower elevation, warm-water communities associated with low agricultural intensity, and (3) lower elevation, warm-water communities associated with moderate to high agricultural intensity. Multimetric community condition indices indicated that sites in the Cascades and Eastern Cascades site group were largely unimpaired. In contrast, all but two sites in the Columbia Basin site group were impaired, some severely. Agriculture (nutrients and pesticides) was the primary factor responsible for this impairment, and all impaired sites were characterized by multiple indicators of impairment. Three sites (Granger Drain, Moxee Drain, and Spring Creek) had high levels of impairment. Sites in the large-river site group were moderately to severely impaired downstream from the city of Yakima. High levels of impairment at large-river sites corresponded with high levels of pesticides in fish tissues and the occurrence of external anomalies.

Washington↗
USGS1993

Methods for sampling fish communities as part of the National Water-Quality Assessment Program

Fish community structure is characterized in the U.S. Geological Survey's National Water-Quality Assessment Program as part of an integrated physical, chemical, and biological assessment of the Nation's water quality. The objective of the National Water-Quality Assessment characterization of fish community structure is to relate fish community characteristics to physical, chemical, and other biological factors to assess water-quality conditions. To accomplish this, fish community structure is described at sites representing selected environmental settings. In addition, spatial and temporal patterns in fish community structure are examined at local, regional, and national levels. A representative sample of the fish community is collected by sampling a stream reach using two complementary methods. The primary collection method is electrofishing using backpack, towed, or boat-operated electrofishing gear; seining is a secondary technique. Other secondary techniques may be substituted after careful consideration of sampling efficiency and consultation with local fish ecologists. Before fish sampling is conducted, careful consideration must be given to collecting permits; protecting endangered, threatened, and special-concern species; and coordinating sampling efforts with other fish ecologists. After the sample is collected, individual fish are identified to species by ichthyologists. Length and weight measurements are taken, and the presence of external anomalies are recorded.

Open-File Report↗