Geology topics

Stephanie R. James

Publications and source records attributed to Stephanie R. James.

15 recordsLinked to original sources

USGS2026

The saline groundwater legacy of a large buried coastal paleo-estuary

Elevated groundwater salinity in coastal regions threatens the beneficial use of fresh groundwater. Coastal groundwater management typically focuses on preventing intrusion from modern sources of seawater; however, past geological processes can also leave a legacy of saline groundwater now hidden in the subsurface. Here, multiple extensive airborne electromagnetic surveys provide detailed evidence of residual salinity from a paleo-estuary filling a late Pleistocene incised valley impacting more than 10,000 km 2 that is now hidden beneath coastal Louisiana’s deltaic plain. Our results show that the three-dimensional pattern of saline groundwater beneath Louisiana mimics that of near-surface aquifers surrounding the modern Delaware Bay estuary, fingerprinting the signature of the past drowning of a large, incised valley of the Mississippi River following post-glacial sea-level rise. These findings demonstrate a new framework for understanding legacy sources of saltwater critical for managing stressed water resources along global coastlines.

Louisiana↗

USGS2025

Near-surface geophysics: Environmental applications

The field of geophysics encompasses a broad and diverse compilation of methodologies that employs principles of physics to characterize properties of earth materials within the subsurface. While geophysical methods have a long history in resource exploration and studies of Earth’s interior, the subdiscipline of “near-surface geophysics” has evolved in recent decades for examination of the shallow, near-surface environment for a range of purposes ranging from archaeological or forensic investigations to assessment of geologic, hydrologic, biologic, and geochemical properties and processes. “Environmental geophysics” are near-surface geophysical studies and methods that focus on understanding natural systems (e.g., watershed hydrology, groundwater–surface water connections, biophysical processes) as well as research pertaining to anthropogenic impacts and land management, (e.g., contamination and remediation, saltwater intrusion, agricultural practices). This field can be further subdivided into subdisciplines focused on specific topics and applications, such as water resources and hydrology (hydrogeophysics) or biologic and microbial processes (biogeophysics). Studies in environmental geophysics span a range of scales, from pore-scale laboratory tests to watershed-scale or regional field experiments. Methods vary by the nature of physics employed, the specific measurement acquired, and how that data is ultimately processed and analyzed to produce interpretable results. There exists further diversity in the acquisition logistics, geometry, and timing of data collection. Geophysical data can be collected in boreholes (one-dimensional, 1-D, vertical profiles), along survey lines (two-dimensional, 2-D, cross-sections), or in dense sensor arrays or gridded profiles (three-dimensional, 3-D, models). Regarding the temporal aspect, studies can conduct one-time geophysical surveys to obtain detailed imaging of subsurface structure or use timelapse and continuous monitoring to investigate variations in subsurface properties over time. The cumulation of all possible permutations of these factors (method, acquisition geometry, survey design, and target application) results in an immense diversity among environmental geophysical studies. Nevertheless, this field remains unified in the pursuit of understanding natural and human-impacted near-surface environments through geophysical investigations. Here we highlight some key references within environmental geophysics. Resources on geophysical theory, acquisition logistics, processing and inversion workflows, and example case studies are categorized into the most common geophysical classes within Geophysical Methods. Lastly, example references for the dominant types of applications in environmental geophysical studies are catalogued in Environmental Applications.

Book chapter↗

USGS2025

Uncertainty quantification of geophysical and hydrologic parameters estimated from borehole nuclear magnetic resonance data

Borehole nuclear magnetic resonance (bNMR) data are typically used to infer in situ hydrologic properties. Partial water content as a function of pore size is estimated by fitting the measured NMR response to a multi-exponential T 2 distribution, and the sum of estimated T 2 amplitudes equals the total volumetric water content. From these estimated parameters, several empirical relationships are commonly used to infer hydraulic conductivity from the NMR-estimated water content and T 2 distribution. Often, parameters are estimated through deterministic inversion methods that produce a single best-fit estimate, but do not reflect uncertainties in model parameters. Here, a Bayesian Markov chain Monte Carlo (McMC) approach for analyzing bNMR data is developed that allows for comprehensive uncertainty quantification of NMR parameters and derived hydrologic properties. The underlying model that describes the T 2 distribution is defined by a set of spline interpolation points. The number of interpolation points is allowed to vary in a trans-dimensional algorithm that naturally favors simple models with fewer interpolation points, allowing the data to inform the necessary level of model complexity. Additionally, data error is estimated as an unknown parameter. Analysis of the ensemble of models output from the McMC algorithm provides useful details on the range of plausible T 2 distributions that can fit a measured bNMR decay curve, as well as uncertainty estimates of total water content. The ensemble of NMR parameters can also be propagated through commonly used relationships to produce uncertainty estimates on derived parameters such as bound/capillary/mobile water content or hydraulic conductivity.

JGR Machine Learning and Computation↗

USGS2024

Upland Yedoma taliks are an unpredicted source of atmospheric methane

Landscape drying associated with permafrost thaw is expected to enhance microbial methane oxidation in arctic soils. Here we show that ice-rich, Yedoma permafrost deposits, comprising a disproportionately large fraction of pan-arctic soil carbon, present an alternate trajectory. Field and laboratory observations indicate that talik (perennially thawed soils in permafrost) development in unsaturated Yedoma uplands leads to unexpectedly large methane emissions (35–78 mg m −2 d −1 summer, 150–180 mg m −2 d −1 winter). Upland Yedoma talik emissions were nearly three times higher annually than northern-wetland emissions on an areal basis. Approximately 70% emissions occurred in winter, when surface-soil freezing abated methanotrophy, enhancing methane escape from the talik. Remote sensing and numerical modeling indicate the potential for widespread upland talik formation across the pan-arctic Yedoma domain during the 21 st and 22 nd centuries. Contrary to current climate model predictions, these findings imply a positive and much larger permafrost-methane-climate feedback for upland Yedoma.

Alaska, Siberia↗

USGS2023

System-scale airborne electromagnetic surveys in the lower Mississippi River Valley support multidisciplinary applications

The lower Mississippi River Valley spans over 200,000 square kilometres in parts of seven states, encompassing areas of critical groundwater supplies, natural hazards, infrastructure, and low-lying coastal regions. From 2018 - 2022, the U.S. Geological Survey acquired over 82,000 line-kilometres of airborne electromagnetic, radiometric, and magnetic data over this region to provide comprehensive and systematic information about subsurface geologic and hydrologic properties that support multiple scientific and societal interests. Most of the data were acquired on a regional grid of west-east flight lines separated by 3 - 6 kilometres; however, several high-resolution inset grids with line spacing as close as 200 m were acquired in targeted areas of interest. Approximately 8,000 line-kilometres were acquired along streams and rivers to characterise the potential for surface water-groundwater connection, and another 6,000 line-kilometres were acquired along the Mississippi and Arkansas River levees to characterise this critical infrastructure. Here, we present a summary of the data along with several examples of how they are being used to inform regional groundwater model development, inferences of groundwater salinity, identification of faults in the New Madrid seismic zone, and levee infrastructure.

lower Mississippi River Valley↗

USGS2022

Rapid and gradual permafrost thaw: A tale of two sites

Warming temperatures and increasing disturbance by wildfire and extreme weather events is driving permafrost change across northern latitudes. The state of permafrost varies widely in space and time, depending on landscape, climate, hydrologic, and ecological factors. Despite its importance, few approaches commonly measure and monitor the changes in deep (>1 m) permafrost conditions with high spatial resolution. Here, we use electrical resistivity tomography surveys along two transects in interior Alaska previously disturbed by wildfire and more recently by warming temperatures and extreme precipitation. Long-term point observations of permafrost depth, temperature, and water content inform geophysical measurements which, in turn, are used to extrapolate interpretations over larger areas and with high spatial fidelity. We contrast gradual loss of recently formed permafrost driven by warmer temperatures and increased snowfall, with rapid permafrost loss driven by changes in air temperature, snow depth, and extreme summer precipitation in 2014.

Alaska↗

USGS2022

GSPy: A new toolbox and data standard for Geophysical Datasets

The diversity of geophysical methods and datatypes, as well as the isolated nature of various specialties (e.g., electromagnetic, seismic, potential fields) leads to a profusion of separate data file formats and documentation conventions. This can hinder cooperation and reduce the impact of datasets researchers have invested in heavily to collect and prepare. An open, portable, and well-supported community data standard could greatly improve the interoperability, transferability, and long-term archival of geophysical data. Airborne geophysical methods particularly need an open and accessible data standard, and they exemplify the complexity that is common in geophysical datasets where critical auxiliary information on the survey and system parameters are required to fully utilize and understand the data. Here, we propose a new Geophysical Standard, termed the GS convention, that leverages the well-established and widely used NetCDF file format and builds on the Climate and Forecasts (CF) metadata convention. We also present an accompanying open-source Python package, GSPy, to provide methods and workflows for building the GS-standardized NetCDF files, importing and exporting between common data formats, preparing input files for geophysical inversion software, and visualizing data and inverted models. By using the NetCDF format, handled through the Xarray Python package, and following the CF conventions, we standardize how metadata is recorded and directly stored with the data, from general survey and system information down to specific variable attributes. Utilizing the hierarchical nature of NetCDF, GS-formatted files are organized with a root Survey group that contains global metadata about the geophysical survey. Data are then organized into subgroups beneath Survey and are categorized as Tabular or Raster depending on the geometry and point of origin for the data. Lastly, the standard ensures consistency in constructing and tracking coordinate reference systems, which is vital for accurate portability and analysis. Development and adoption of a NetCDF-based data standard for geophysical surveys can greatly improve how these complex datasets are shared and utilized, making the data more accessible to a broader science community. The architecture of GSPy can be easily transferred to additional geophysical datatypes and methods in future releases.

Frontiers in Earth Science - Environmental Informa↗

USGS2022

Watching the Cryosphere thaw: Seismic monitoring of permafrost degradation using distributed acoustic sensing during a controlled heating experiment

Permafrost degradation is rapidly increasing in response to a warming Arctic climate, altering landscapes and damaging critical infrastructure. Solutions for monitoring permafrost thaw dynamics are essential to understand biogeochemical feedbacks as well as to issue warnings for hazardous geotechnical conditions. We investigate the feasibility of permafrost monitoring using permanently installed fiber-optic seismic networks. We conducted a 2-month seismic monitoring campaign during a controlled thaw experiment using a permanent surface orbital vibrator (SOV) and a 2D-array of distributed acoustic sensing (DAS) cables, and observed significant (15%) shear-wave velocity ( V s ) reductions and approximately 2 m depression of the permafrost table beneath the heating zone. These observations were validated by time-lapse horizontal-to-vertical spectral ratio (HVSR) analysis from three co-located broadband seismometers. The combination of SOV and DAS provided unique seismic observations for permafrost monitoring at the field scale, as well as a basis for design and development of early warning systems for permafrost thaw.

Geophysical Research Letters↗

USGS2021

Characterizing methane emission hotspots from thawing permafrost

Methane (CH 4 ) emissions from climate-sensitive ecosystems within the northern permafrost region represent a potentially large but highly uncertain source, with current estimates spanning a factor of seven (11–75 Tg CH 4 yr −1 ). Accelerating permafrost thaw threatens significant increases in pan-Arctic CH 4 emissions, amplifying the permafrost carbon feedback. We used airborne imaging spectroscopy with meter-scale spatial resolution and broad coverage to identify a previously undiscovered CH 4 emission hotspot adjacent to a thermokarst lake in interior Alaska. Hotspot emissions were confined to <1% of the 10 ha lake study area. Ground-based chamber measurements confirmed average daily fluxes from the hotspot of 1,170 mg CH 4 m −2 d −1 , with extreme daily maxima up to 24,200 mg CH 4 m −2 d −1 . Ground-based geophysical measurements revealed thawed permafrost directly beneath the CH 4 hotspot, extending to a depth of ∼15 m, indicating that the intense CH 4 emissions likely originated from recently thawed permafrost. Hotspot emissions accounted for ∼40% of total diffusive CH 4 emissions from the lake study site. Combining study site findings with hotspot statistics from our 70,000 km 2 airborne survey across Alaska and northwestern Canada, we estimate that pan-Arctic terrestrial thermokarst hotspots currently emit 1.1 (0.1–5.2) Tg CH 4 yr −1 , or roughly 4% of the annual pan-Arctic wetland budget from just 0.01% of the northern permafrost land area. Our results suggest that significant proportions of pan-Arctic CH 4 emissions originate from disproportionately small areas of previously undetermined thermokarst emissions hotspots, and that pan-Arctic CH 4 emissions may increase non-linearly as thermokarst processes increase under a warming climate.

Alaska↗

USGS2021

The biophysical role of water and ice within permafrost nearing collapse: Insights from novel geophysical observations

The impact of permafrost thaw on hydrologic, thermal, and biotic processes remains uncertain, in part due to limitations in subsurface measurement capabilities. To better understand subsurface processes in thermokarst environments, we collocated geophysical and biogeochemical instruments along a thaw gradient between forested permafrost and collapse-scar bogs at the Alaska Peatland Experiment (APEX) site near Fairbanks, Alaska. Ambient seismic noise monitoring provided continuous high-temporal resolution measurements of water and ice saturation changes. Maps of seismic velocity change identified areas of large summertime velocity reductions nearest the youngest bog, indicating potential thaw and expansion at the bog margin. These results corresponded well with complementary borehole nuclear magnetic resonance measurements of unfrozen water content with depth, which showed permafrost soils nearest the bog edges contained the largest amount of unfrozen water along the study transect, up to 25% by volume. In situ measurements of methane within permafrost soils revealed high concentrations at these bog-edge locations, up to 30% soil gas. Supra-permafrost talik zones were observed at the bog margins, indicating talik formation and perennial liquid water may drive lateral bog expansion and enhanced permafrost carbon losses preceding thaw. Comparison of seismic monitoring with wintertime surface carbon dioxide fluxes revealed differential responses depending on time and proximity to the bogs, capturing the controlling influence of subsurface water and ice on microbial activity and surficial emissions. This study demonstrates a multidisciplinary approach for gaining new understanding of how subsurface physical properties influence greenhouse gas production, emissions, and thermokarst development.

Alaska↗

USGS2021

Airborne geophysical surveys of the lower Mississippi Valley demonstrate system-scale mapping of subsurface architecture

The Mississippi Alluvial Plain hosts one of the most prolific shallow aquifer systems in the United States but is experiencing chronic groundwater decline. The Reelfoot rift and New Madrid seismic zone underlie the region and represent an important and poorly understood seismic hazard. Despite its societal and economic importance, the shallow subsurface architecture has not been mapped with the spatial resolution needed for effective management. Here, we present airborne electromagnetic, magnetic, and radiometric observations, measured over more than 43,000 flight-line-kilometers, which collectively provide a system-scale snapshot of the entire region. We develop detailed maps of aquifer connectivity and shallow geologic structure, infer relationships between structure and groundwater age, and identify previously unseen paleochannels and shallow fault structures. This dataset demonstrates how regional-scale airborne geophysics can close a scale gap in Earth observation by providing observational data at suitable scales and resolutions to improve our understanding of subsurface structures.

Mississippi River Valley↗

USGS2021

Decadal-scale hotspot methane ebullition within lakes following abrupt permafrost thaw

Thermokarst lakes accelerate deep permafrost thaw and the mobilization of previously frozen soil organic carbon. This leads to microbial decomposition and large releases of carbon dioxide (CO 2 ) and methane (CH 4 ) that enhance climate warming. However, the time scale of permafrost-carbon emissions following thaw is not well known but is important for understanding how abrupt permafrost thaw impacts climate feedback. We combined field measurements and radiocarbon dating of CH 4 ebullition with (a) an assessment of lake area changes delineated from high-resolution (1–2.5 m) optical imagery and (b) geophysical measurements of thaw bulbs (taliks) to determine the spatiotemporal dynamics of hotspot-seep CH 4 ebullition in interior Alaska thermokarst lakes. Hotspot seeps are characterized as point-sources of high ebullition that release 14 C-depleted CH 4 from deep (up to tens of meters) within lake thaw bulbs year-round. Thermokarst lakes, initiated by a variety of factors, doubled in number and increased 37.5% in area from 1949 to 2009 as climate warmed. Approximately 80% of contemporary CH 4 hotspot seeps were associated with this recent thermokarst activity, occurring where 60 years of abrupt thaw took place as a result of new and expanded lake areas. Hotspot occurrence diminished with distance from thermokarst lake margins. We attribute older 14 C ages of CH 4 released from hotspot seeps in older, expanding thermokarst lakes ( 14 C CH4 20 079 ± 1227 years BP, mean ± standard error (s.e.m.) years) to deeper taliks (thaw bulbs) compared to younger 14 C CH4 in new lakes ( 14 C CH4 8526 ± 741 years BP) with shallower taliks. We find that smaller, non-hotspot ebullition seeps have younger 14 C ages (expanding lakes 7473 ± 1762 years; new lakes 4742 ± 803 years) and that their emissions span a larger historic range. These observations provide a first-order constraint on the magnitude and decadal-scale duration of CH 4 -hotspot seep emissions following formation of thermokarst lakes as climate warms.

Alaska↗

USGS2021

USGS permafrost research determines the risks of permafrost thaw to biologic and hydrologic resources

The U.S. Geological Survey (USGS), in collaboration with university, Federal, Tribal, and independent partners, conducts fundamental research on the distribution, vulnerability, and importance of permafrost in arctic and boreal ecosystems. Scientists, land managers, and policy makers use USGS data to help make decisions for development, wildlife habitat, and other needs. Native villages and cities can forecast landscape change and where soils are vulnerable to thaw with more certainty. The scientific community can use USGS data to develop scenarios of future permafrost change.

Alaska↗

USGS2021

Capturing the changing cryosphere with seismic horizontal-vertical spectral ratios

Changes in Earth’s cryosphere can have direct impacts on ecosystems, wildlife, and human communities that may extend to other reaches of the planet, such as through sea-level rise or altering the global carbon budget. Advances in passive seismic technology and processing methods have opened new opportunities to better understand how ice and permafrost soils are responding to changing conditions. Here, we present examples from two cryosphere applications of a simple seismic technique using horizontal-vertical spectral ratios (H/V) to explore the influences, considerations, and outcomes when applied to 1) glacial ice-thickness estimates and 2) permafrost and active-layer monitoring.

FastTIMES↗

USGS2021

Foreword to this special issue on climate change and the critical zone geophysics

Welcome to this special issue on the use of geophysics in climate change and critical zone (CZ) research. The importance of these research areas cannot be overstated, and yet when we were selecting contributions for this special issue, we wrestled with the fundamental question: are climate change and the critical zone two separate research areas, or one? In other words, would there be a clear distinction between critical-zone focused articles and those addressing climate change, or would there be significant overlap making that distinction irrelevant. As we worked through the excellent submissions, it became more and more clear that any geophysical study addressing one of these elements would almost certainly be impacted in some way by the other.

FastTIMES↗