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Simon N. Topp

Publications and source records attributed to Simon N. Topp.

2 recordsLinked to original sources

Predicting Minnesota lake ice phenology with deep learning, explainable methods, and a physically based benchmark, 1980-2018

Globally, lakes are losing ice cover, but our understanding of the rates and variability of change are biased toward few lakes with long-term records. Recent works have used remote sensing and predictive modeling to supplement the observational record, but these approaches produce large errors when estimating ice phenology for individual lakes. Accurate, lake-specific estimates of ice formation and breakup through time are important for estimating variability in ice loss across heterogenous lakes and for understanding broader implications. This work explores machine learning (ML) approaches for hindcasting ice phenology using observations from 1980 to 2018 across 625 Minnesota lakes, covering 4359 lake-years of record. We used daily weather and static lake attributes to develop 60 neural networks for hindcasting lake ice time series. We considered LSTMs and attention-based transformers of varying size and initial parameters. We found that the largest LSTM performed most accurately on withheld data, and on a test set of unseen years and lakes, it outperformed a state-of-the-art physically based model in daily accuracy (97% vs. 95%), year-level metrics (RMSE for ice formation = 6.9 vs. 13.2 days; ice breakup = 7.5 vs. 12.2 days; ice duration = 9.6 vs. 13.7 days), and estimating loss of ice cover from 1980 to 2018 (observed = 8.4 days, LSTM = 7.2 days, GLM = 3.4 days). This demonstrates that ML can estimate historical lake ice formation and breakup dates within a week of observed phenology across heterogeneous lakes and recreate broad scale trends in ice cover phenology with limited long-term ice records.

Minnesota↗

Clarifying the trophic state concept to advance macroscale freshwater science and management

For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use-specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth are used to classify TS based on autotrophic production, whereas phosphorus, dissolved organic carbon, and true color are used to classify TS based on both autotrophic and heterotrophic production. Both classification approaches aim to characterize an ecosystem's function broadly, but with varying degrees of autotrophic and heterotrophic processes considered in those characterizations. Moreover, differing classification schemes can create inconsistent interpretations of ecosystem integrity. For example, the US Clean Water Act focuses exclusively on algal threats to water quality, framed in terms of eutrophication in response to nutrient loading. This usage lacks information about non-algal threats to water quality, such as dystrophication in response to dissolved organic carbon loading. Consequently, the TS classification schemes used to identify eutrophication and dystrophication may refer to ecosystems similarly (e.g., oligotrophic and eutrophic), yet these categories are derived from different proxies. These inconsistencies in TS classification schemes may be compounded when interdisciplinary projects employ varied TS frameworks. Even with these shortcomings, TS can still be used to distill information on complex aquatic ecosystem function into a set of generalizable expectations. The usefulness of distilling complex information into a TS index is substantial such that usage inconsistencies should be explicitly addressed and resolved. To emphasize the consequences of diverging TS classification schemes, we present three case studies for which an improved understanding of the TS concept advances freshwater research, management efforts, and interdisciplinary collaboration. To increase clarity in TS, the aquatic sciences could benefit from including information about the proxy variables, ecosystem type, as well as the spatiotemporal domains used to classify TS. As the field of aquatic sciences expands and climatic irregularity increases, we highlight the importance of re-evaluating fundamental concepts, such as TS, to ensure their compatibility with evolving science.

Ecosphere↗