Geology topics

Shannon L. White

Publications and source records attributed to Shannon L. White.

At least 19 recordsLinked to original sources

USGS2025

Cryptic life history diversity supports endangered species recovery in an ultra-urbanized landscape

Urban landscapes are often overlooked in conservation planning, allowing human activities to take precedence in ecosystem management. However, even heavily modified environments can support diverse species profiles, but continued expansion of the human footprint could transform these biodiversity hotspots into ecological traps that serve as hidden catalysts for demographic declines. In the backdrop of one of the world’s most urbanized landscapes-New York City, USA—is a federally endangered population of shortnose sturgeon ( Acipenser brevirostrum ) that has been quietly recovering for several decades despite many demographic threats. Here, we identify a unique behavioral phenotype of shortnose sturgeon that occupies habitats in New York Harbor in late spring and fall, likely using the area to optimize bioenergetic processes. As this study highlights, urbanized environments can be a nexus for cryptic phenotypic diversity which, if overlooked, can disrupt eco-evolutionary processes and contribute to population and species loss.

New York↗

USGS2025

Sounds of Atlantic sturgeon spawning: First description and opportunities for riverine endangered species conservation with passive acoustic monitoring

Effective recovery plans for endangered species rely on insights into species’ ecology to identify risks and develop population recovery strategies. Data gaps pose challenges for many species of conservation concern, particularly those with cryptic behaviors or that occupy difficult-to-access habitats. Sounds produced by these species offer an effective means of observing many such marine and aquatic species, and for this reason, passive acoustic monitoring has emerged as an important study and assessment approach in marine systems. This approach is only just beginning to be applied for aquatic species monitoring in freshwater habitats. Atlantic sturgeon Acipenser oxyrinchus , a species of conservation concern along the US East Coast, remains poorly understood due to persistent data gaps despite years of conservation efforts. While sounds have been described for other sturgeons, sounds from Atlantic sturgeon have not yet been reported. Here, we characterized acoustic cues associated with Atlantic sturgeon in the Hudson River, New York, USA, and identified a low-frequency (44 Hz peak frequency) signal strongly correlated with the occurrence of telemetry-tagged adults which enter the river to spawn. We corroborated these efforts with recordings of captive Atlantic sturgeon, in which we detected the same sound type during a spawning period. Our findings provide an opportunity to develop passive acoustic monitoring strategies for Atlantic sturgeon, offering a non-invasive tool for understanding the spatiotemporal distribution of spawning activity across their range. We demonstrate potential applications of passive acoustic monitoring to inform sturgeon conservation and management, including characterizing habitat use, identifying cross-species interactions, and providing abundance indices.

New York↗

USGS2025

Stock composition of cryptic Atlantic sturgeon (Acipenser oxyrinchus oxyrinchus) in the Restigouche River and estuary, Canada

The Atlantic sturgeon ( Acipenser oxyrinchus oxyrinchus ) is an important species in eastern North America due to its conservation status and cultural significance. Local Mi'gmaw fishers have reported an increase in sturgeon sightings over the last decade in the Restigouche River and estuary. Mi’gmaw Knowledge, oral history, and archaeological finds attest to their historical presence in the region; however, the river is not a documented habitat for Atlantic sturgeon in Western literature. Based on community interest and concern, the Gespe’gewa’gi Institute of Natural Understanding co-developed a Two-Eyed Seeing collaboration to learn more about these sturgeon. Here, we investigate their genetic origin via microsatellite analyses and hypothesized that they would originate from the closest spawning habitat, the St. Lawrence River. We found that, overall, the largest contributor to our Atlantic sturgeon sampled from the Restigouche River system was the St. Lawrence River (85.7% of samples), followed by the Wolastoq (3.6%), then a mixture of the St. Lawrence, the Wolastoq, the Kennebec, and/or the Hudson River populations (10.7%). Improving our understanding of the distribution of Atlantic sturgeon through microsatellite analyses and leveraging range-wide genetic baselines directly assesses the genetic origin of unknown stock compositions and can support the future co-management of the species.

Restigouche River and estuary↗

USGS2025

Combining acoustic telemetry and side-scan sonar to estimate abundance of endangered shortnose sturgeon in the Hudson River, New York

For endangered shortnose sturgeon (Acipenser brevirostrum), the ability to estimate and monitor population size is critical for tracking species’ recovery. Yet, contemporary abundance estimates have not been completed for many shortnose sturgeon populations, largely owing to the difficulty in using traditional abundance estimators for sturgeons. Here, we estimate the adult shortnose sturgeon population size of the Hudson River, NY by integrating data from two largely passive sampling methods – acoustic telemetry and side-scan sonar – into a Bayesian hierarchical model of abundance. We estimated the adult abundance to be 69,798 individuals (95% CI = 9,207-185,666), making the Hudson River the largest extant shortnose sturgeon population. Despite this, the population remains vulnerable to localized disturbances, as over 40% of the population congregated in a small overwintering habitat that coincides with an area of high anthropogenic activity. Accordingly, recurrent demographic surveys may be beneficial for gaining insight into the relative effects of anthropogenic and naturally stochastic processes shaping shortnose sturgeon demography. Our modeling framework provides a relatively low-cost alternative for future demographic monitoring of species of conservation concern.

New York↗

USGS2024

Population genetic structure and demographic history reconstruction of introduced flathead catfish (Pylodictis olivaris) in two US Mid-Atlantic rivers

Population genetic analysis of invasive populations can provide valuable insights into the source of introductions, pathways for expansion, and their demographic histories. Flathead catfish ( Pylodictis olivaris ) are a prolific invasive species with high fecundity, long-distance dispersal, and piscivorous feeding habits that can lead to declines in native fish populations. In this study, we analyse the genetics of invasive P. olivaris in the Mid-Atlantic region to assess their connectivity and attempt to reconstruct the history of introduced populations. Based on an assessment across 13 microsatellite loci, P. olivaris from the Susquehanna River system ( N = 537), Schuylkill River ( N = 33), and Delaware River ( N = 1) have low genetic diversity (global H obs = 0.504), although we detected no evidence of substantial inbreeding ( F IS = −0.083 to 0.022). P. olivaris from these different river systems were genetically distinct, suggesting separate introductions. However, population structure was much weaker within each river system and exhibited a pattern of high connectivity, with some evidence of isolation by distance. P. olivaris from the Susquehanna and Schuylkill rivers showed evidence for recent genetic bottlenecks, and demographic models were consistent with historical records, which suggest that populations were established by recent founder events consisting of a small number of individuals. Our results show the risk posed by small introductions of P. olivaris , which can spread widely once a population is established, and highlight the importance of prevention and sensitive early detection methods to prevent the spread of P. olivaris in the future.

Maryland, New Jersey, Pennsylvania↗

USGS2024

Genetic evidence for the presence of wild-caught sturgeons in commercial markets in Georgia

Sturgeons (Family: Acipenseridae) are among the most endangered taxa worldwide. Significant resources have been invested into the conservation of global sturgeon populations, including the development of commercial aquaculture programs. These programs are intended to improve conservation outcomes by reducing the harvest of wild populations while still meeting commercial demand for sturgeon products. However, there is growing concern that commercial aquaculture programs may contribute to wild population declines through continued, illegal harvest and the escape and/or release of captive individuals into wild environments. These concerns may be particularly acute in the country of Georgia which, despite its small territory and altered landscape, is a globally significant hotspot for sturgeon diversity. In order to understand the potential threat of captive culture on wild sturgeon populations in Georgia, we used mitochondrial DNA sequencing and microsatellite analyses to identify the species and origin of sturgeons encountered in commercial settings. Microsatellite analyses showed significant differentiation between wild and commercial Russian sturgeon populations and highlighted the potential for wild-caught individuals to be present in coastal markets in Georgia. The analyses of mitochondrial haplotypes also suggested that commercial markets may contain sturgeon species that are not native to the region. Overall, our results suggest that wild sturgeon populations may still be exploited to support captive aquaculture programs and commercial sales.

Diversity↗

USGS2024

Spatiotemporal patterns in habitat use of natal and non-natal adult Atlantic sturgeon in two spawning rivers

Background Monitoring movement across an organism’s ontogeny is often challenging, particularly for long-lived or wide-ranging species. When empirical data are unavailable, general knowledge about species’ ecology may be used to make assumptions about habitat use across space or time. However, inferences about habitat use based on population-level ecology may overlook important eco-evolutionary contributions from individuals with heterogenous ethologies and could diminish the efficacy of conservation and management. Methods We analyzed over a decade of acoustic telemetry data to understand individual differences in habitat use of federally endangered adult Atlantic sturgeon ( Acipenser o. oxyrinchus ) in the Delaware and Hudson rivers during spawning season. In particular, we sought to understand whether sex or natal origin could predict patterns in habitat use, as there is a long-held assumption that adult Atlantic sturgeon seldom stray into non-natal rivers. Results In both rivers, migration timing, spawning habitat occupancy, and maximum upstream migration distance were similar between natal and non-natal individuals. While non-natal individuals represented only 13% of fish detected in the Hudson River, nearly half of all tagged fish detected in the Delaware River were non-natal and generally occupied freshwater habitats longer than natal individuals. In both systems males had more heterogenous patterns of habitat use and longer duration of occupancy than did females. Conclusions This study demonstrates the importance of non-natal rivers for fulfilling ontogenetic habitat requirements in Atlantic sturgeon. Our results may also highlight an opportunity to improve conservation and management by extending habitat designations to account for more heterogenous patterns in individual habitat use in non-natal freshwater environments.

Delaware↗

USGS2024

Integrating genetic and demographic data to refine indices of abundance for Atlantic sturgeon in the Hudson River, New York

Critical to Atlantic sturgeon Acipenser oxyrinchus oxyrinchus recovery and monitoring is the ability to estimate abundance and identify age- and stock-specific threats to survival. As adult Atlantic sturgeon spend much of their lives broadly distributed in marine and estuarine environments, it is challenging to collect data needed to estimate these demographic parameters in the adult population. Alternatively, data collected from juveniles and subadults before emigration may be used to calculate indices of abundance and provide insights into recruitment dynamics and stage-specific survival. However, uncertainty about stock mixture during early life stages may limit the use of juvenile and subadult data for monitoring recovery. To better understand early life stage stock composition, we conducted a genetic mixed-stock analysis of over 500 juvenile and subadult Atlantic sturgeon captured in an overwintering area in the Hudson River, New York, USA, from 2017 to 2022. The majority of Atlantic sturgeon in our study were natal to the Hudson River population, regardless of sex, size, or age. As such, indices of relative abundance estimated from survey data are expected to primarily characterize the demographic trends of Hudson River juvenile and subadult Atlantic sturgeon. We also found a small proportion of individuals that were most likely to have originated from more distantly located rivers, highlighting the potential for long-distance migration in juvenile and subadult Atlantic sturgeon. Results of this study strengthen our understanding of juvenile and subadult Atlantic sturgeon habitat use in the Hudson River and improve our ability to use data from early age classes to monitor recovery and stage-specific survival.

New York↗

USGS2023

Movement beyond the mean: decoupling sources of individual variation in brook trout movement across seasons

Movement is an important eco-evolutionary process that can shape population and ecosystem structure and function. Accordingly, a firm understanding of species movement ecology is often foundational to effective management and conservation. However, despite movement being an inherently individual-level behavior, there remains a tendency to describe dispersal and migration patterns using simple population-level processes and effects. Overlooking within- and among-individual variation in movement risks incomplete understanding of the intrinsic and extrinsic factors that govern dispersal dynamics and could potentially result in inadequate management of critical behavioral phenotypes. In this study, we monitored movement of over 100 brook trout ( Salvelinus fontinalis ) and quantified the effect of individual-level traits, season, and their interactions to better understand factors that influence vagility. Our results suggest that movement was higher in fall than in summer, particularly for fish in poor condition. But we found no significant main effects for sex, providing no evidence for sex-biased dispersal. To better understand sources of individual variation, we also allowed for sex- and season-specific residual standard deviations. In doing so, we found that, on average, movement was more variable in fall compared to summer, and that females were more variable than males in vagility. Taken together, these results demonstrate how intrinsic, individual-level traits can interact with abiotic environmental conditions to determine movement. They also highlight the potential for simple explanations of movement ecology to overlook important traits that may help predict individual-level behaviors.

Pennsylvania↗

USGS2023

Genetic population assignments of Atlantic sturgeon provided to National Marine Fisheries Service, 2022

Acipenser oxyrinchus oxyrinchus (Atlantic sturgeon) were once abundant and supported large-scale fisheries throughout much of the east coast of the United States. However, historic overharvest and habitat loss resulted in dramatic declines in abundance and eventual listing under the Endangered Species Act of the United States. As part of this listing, Atlantic sturgeon populations were divided into five distinct population segments (DPSs), with many management activities occurring at the level of the DPS. However, because subadult and adult Atlantic sturgeon can make large, coast-wide migrations and often mix extensively with individuals from other populations, individuals may be exposed to conservation threats away from their natal river or DPS, ultimately making it difficult to determine the appropriate spatial scale for management activities. To help address this uncertainty, the U.S. Geological Survey performed genetic assignment tests to determine the natal origin of 329 Atlantic sturgeon that were encountered as mortalities or taken during permitted activities in 2021. Overall, most individuals assigned to the Hudson River population, with additional major contributions from the James River Fall and Delaware River populations. However, a sizeable proportion of individuals were assigned to more distantly located populations in the southeastern United States. These results highlight the prevalence of long-distance movements in Atlantic sturgeon and underscore that populations may be vulnerable to threats far from their natal rivers.

Open-File Report↗

USGS2023

Is now the time? Review of genetic rescue as a conservation tool for brook trout

Brook trout populations have been declining throughout their native range in the east coast of the United States. Many populations are now distributed in small, isolated habitat patches where low genetic diversity and high rates of inbreeding reduce contemporary viability and long-term adaptive potential. Although human-assisted gene flow could theoretically improve conservation outcomes through genetic rescue, there is widespread hesitancy to use this tool to support brook trout conservation. Here, we review the major uncertainties that have limited genetic rescue from being considered as a viable conservation tool for isolated brook trout populations and compare the risks of genetic rescue with other management alternatives. Drawing on theoretical and empirical studies, we discuss methods for implementing genetic rescue in brook trout that could yield long-term evolutionary benefits while avoiding negative fitness effects associated with outbreeding depression and the spread of maladapted alleles. We also highlight the potential for future collaborative efforts to accelerate our understanding of genetic rescue as a viable tool for conservation. Ultimately, while we acknowledge that genetic rescue is not without risk, we emphasize the merits that this tool offers for protecting and propagating adaptive potential and improving species' resilience to rapid environmental change.

Ecology and Evolution↗

USGS2023

Using genetic data to advance stream fish reintroduction science: A case study in brook trout

Widespread extirpation of native fish populations has led to a rise in species reintroduction efforts worldwide. Most efforts have relied on demographic data alone to guide project design and evaluate success. However, the genetic characteristics of many imperiled fish populations including low diversity, local adaptation, and hatchery introgression emphasize the importance of genetic data in the design and monitoring of reintroduction efforts. Focusing on a case study of brook trout ( Salvelinus fontinalis ) in North Carolina, USA, we show how the combined use of genetic and demographic data can support reintroduction efforts by improving source population selection and providing opportunities to evaluate genetic viability and adaptive potential in restored populations. Using this combined approach, we reintroduced brook trout into a restored stream from two source populations and monitored changes in genetic diversity and population size in source and recipient populations. Three years after the initial translocation, the reintroduced population had comparable density, but higher genetic diversity, than either source population. This study demonstrates the utility of genetic and demographic data for reintroduction efforts, particularly when extant populations are genetically depauperate and maintaining adaptive potential is a primary restoration goal. However, we emphasize the value of continued monitoring at longer temporal and spatial scales to determine the effects of stochastic process on the long-term adaptive capacity and persistence of reintroduced populations. Overall, inclusion of genetic data in reintroduction efforts offers increased ability to meet project goals while simultaneously conserving critical sources of adaptive variation that exist across the landscape.

North Carolina↗

USGS2022

Decades of global sturgeon conservation efforts are threatened by an expanding captive culture industry

After centuries of overexploitation and habitat loss, many of the world's sturgeon (Acipenseridae) populations are at the brink of extinction. Although significant resources are invested into the conservation and restoration of imperiled sturgeons, the burgeoning commercial culture industry poses an imminent threat to the persistence of many populations. In the past decade, the number and distribution of captive sturgeon facilities has grown exponentially and now encompasses diverse interest groups ranging from hobby aquarists to industrial-scale commercial facilities. Expansion of sturgeon captive culture has largely fallen outside the purview of existing regulatory frameworks, raising concerns that continued growth of this industry has real potential to jeopardize conservation of global sturgeon populations. Here, we highlight some of the most significant threats commercial culture poses to wild populations, with particular emphasis on how releases can accelerate wild population declines through mechanisms such as hybridization, introgression, competition, and disease transmission. We also note that in some circumstances, commercial captive culture has continued to motivate harvest of wild populations, potentially accelerating species' declines. Given the prevalence and trajectory of sturgeon captive culture programs, we comment on modifications to regulatory frameworks that could improve the ability of captive culture to support wild sturgeon conservation.

Fisheries Magazine↗

USGS2022

Evaluating sources of bias in pedigree-based estimates of breeding population size

Applications of genetic-based estimates of population size are expanding, especially for species for which traditional demographic estimation methods are intractable due to the rarity of adult encounters. Estimates of breeding population size ( N S ) are particularly amenable to genetic-based approaches as the parameter can be estimated using pedigrees reconstructed from genetic data gathered from discrete juvenile cohorts, therefore eliminating the need to sample adults in the population. However, a critical evaluation of how genotyping and sampling effort influence bias in pedigree reconstruction, and how these biases subsequently influence estimates of N S , is needed to evaluate the efficacy of the approach under a range of scenarios. We simulated a model system to understand the interactive effects of genotyping and sampling effort on error in genetic pedigrees reconstructed from the program COLONY . We then evaluated how errors in pedigree reconstruction influenced bias and precision in estimates of N S using three different rarefaction estimators. Results indicated that pedigree error can be minimal when adequate genetic data are available, such as when juvenile sample sizes are large and/or individuals are genotyped at many informative loci. However, even in cases for which data are limited, using results of the simulation analysis to understand the magnitude and sources of bias in reconstructed pedigrees can still be informative when estimating N S . We applied results of the simulation analysis to evaluate Nˆ S for a population of federally endangered Atlantic sturgeon ( Acipenser oxyrinchus oxyrinchus ) in the Delaware River, USA. Our results indicated that N S is likely to be three orders of magnitude lower compared with historic breeding population sizes, which is a considerable advancement in our understanding of the population status of Atlantic sturgeon in the Delaware River. Our analyses are broadly applicable in the design and interpretation of studies seeking to estimate N S and can help to guide conservation decisions when ecological uncertainty is high. The utility of these results is expected to grow as rapid advances in genetic technologies increase the popularity of genetic population monitoring and estimation.

Delaware, New Jersey, Pennsylvania↗

USGS2022

Population genetics of three at-risk tiger beetles Habroscelimorpha dorsalis dorsalis, H. d. media, and Ellipsoptera puritana

Many tiger beetles (Family Cicindelidae ) are critically imperiled due to their dependence on small patches of suitable habitat that are frequently threatened by natural and anthropogenic disturbances. In the eastern United States, conservation of three tiger beetles - Habroscelimorpha dorsalis dorsalis , H. dorsalis media , and Ellipsoptera puritana - has been inhibited by the absence of population genetic information that is needed for effective recovery planning and potential reintroductions. Using microsatellite panels, we performed population genetic analyses and compared patterns in diversity and differentiation within and between taxa. Nearly all collections of the three taxa had less observed heterozygosity than expected under Hardy-Weinberg Equilibrium, and there was a strong latitudinal gradient in genetic diversity in H. d. dorsalis distributed along the eastern and western shores of the Chesapeake Bay. We also found clear spatial patterns of genetic differentiation which reflected strong isolation-by-distance within all three taxa and between collections of H. d. dorsalis and H. d. media. However, there was evidence of admixture in current (mouth of the Chesapeake Bay) and former (coastal New Jersey) contact zones of H. d. dorsalis and H. d. media . Taken together, our study suggests that relatively few adult tiger beetles may maintain many populations, and that gene flow among nearby habitat patches is common in all three taxa – a characteristic that may help tiger beetles persist in dynamic coastal environments. Results of our analyses can be used to support conservation and management by identifying the spatial scale of metapopulation connectivity and locating populations at the greatest risk of extirpation.

Maryland, Virginia↗

USGS2022

Benefits of genetic data for the design of Brook Trout translocation efforts

With wild trout populations in decline, many conservation practitioners are evaluating the feasibility of incorporating reintroduction and genetic rescue into management frameworks. As interest in these conservation tools continues to grow, so too has the need for rigorous science to evaluate translocation success and improve the efficacy of future efforts. From this, it has become increasingly apparent that approaches which consider both demographics and genetics are most likely to result in successful translocations. In particular, while demographic data are often a central component of project designs, they are insufficient for diagnosing genetic threats such as low diversity, maladaptation, and introgression that characterize many wild trout populations. Consideration for these genetic characteristics is important for long-term project success and to reduce the unintended spread of domestic lineages across the landscape. Using a case study of reintroduction of Brook Trout Salvelinus fontinalis into a North Carolina stream, we show how a combined demographic and genetic approach can be used throughout all stages of project design. In particular, we highlight how genetic data were informative for identifying source populations that had the greatest potential to establish a population with the genetic diversity needed for future adaptation. We also discuss how genetic monitoring of the reintroduced population provided insights into reproductive success and genetic diversity that could be indicative of long-term population persistence. While monitoring is ongoing, this combined genetic and demographic approach provides a promising framework for helping meet reintroduction goals and provides more opportunities for adaptive management following translocation.

Conference Paper↗

USGS2022

Conservation genetics and wild trout: Evolving opportunities to support management

It is increasingly apparent that our planet is undergoing rapid, unprecedented environmental change. These changes are already impacting wild trout populations, leading to declines in occupancy and abundance across increasingly fragmented landscapes. Many changes are projected to intensify in the coming decades, which are likely to be crucial to the future of many wild populations. While there is some uncertainty in exactly how changes will manifest, we can be confident that many populations will need to rapidly adapt to change if they are to persist. The foundation of such rapid change is genetic diversity, and conservation strategies are most likely to be successful when they consider the role of genetics in the outlook for wild trout populations. While not a panacea, rapid advances in the field of conservation genetics allow longstanding questions to be addressed with greater rigor and present new opportunities to support management against a backdrop of accelerating change. Here, we review major advances in conservation genetics as they relate to wild trout and highlight potential opportunities to support conservation in the Anthropocene and key areas of continuing uncertainty.

Conference Paper↗

USGS2022

Utilization of genetic data to inform native Brook Trout conservation in North Carolina

As North Carolina’s only native salmonid, Brook Trout Salvelinus fontinalis is a fish of considerable ecological and cultural significance in the state, but anthropogenic alterations to the landscape and introductions of nonnative salmonids have fragmented and reduced its native range. As a result, the North Carolina Wildlife Resources Commission (NCWRC) has enacted numerous efforts to help conserve the species. Annual demographic surveys of self-sustaining Brook Trout populations have been on-going since 1978, which have also included successful efforts to document previously unidentified populations. Beginning in earnest during the 1990s, allozyme testing was used to assess patterns of hatchery introgression, with over 480 collections genotyped at the creatine kinase locus. In 2010, the NCWRC began using microsatellite markers to conduct an extensive survey of Brook Trout genetic diversity and variation. To date, 541 Brook Trout collections representing 11,090 individuals have been genotyped at 12 microsatellite loci. These data have provided insights into evolutionary relationships among populations, spatial patterns of genetic diversity, and the extent of hatchery introgression within populations. Ultimately, increased understanding of genetic diversity and relatedness have been informative for determining that Brook Trout management in North Carolina is likely best enacted at the level of individual populations. Moreover, we have used these data to actively guide stream restoration and population reintroduction activities. Over the last 15 years, NCWRC and its partners have used genetic data to prioritize habitat enhancement activities and guide 17 Brook Trout population reintroduction projects. In the future, we plan to continue expanding the microsatellite genetic baseline while also exploring the utility of phylogenomic analyses to inform Brook Trout conservation activities. Genetic and genomic approaches have great potential to improve the efficacy of conservation actions for Brook Trout in North Carolina and throughout its native range.

North Carolina↗