Geology topics

Shannon K. Brewer

Publications and source records attributed to Shannon K. Brewer.

At least 55 records · Page 3Linked to original sources

USGS2021

Flow dynamics influence fish recruitment in hydrologically connected river-reservoir landscapes

Hydrologic processes are often important determinants of successful recruitment of native fishes. However, water management practices can result in abnormal changes in daily and seasonal hydrology patterns. Rarely has fish recruitment across river–reservoir landscapes been considered in relation to flow management, despite the direct relationship between reservoir water management and the resulting upstream and downstream hydrology. We evaluated the relationships between lotic and lentic hydrology and recruitment of two native broadcast-spawning fishes, Freshwater Drum Aplodinotus grunniens and Gizzard Shad Dorosoma cepedianum . Four seasonal periods for each species were identified that related to the species’ spawning biology, from which we derived our remaining hydrology variables. Annual hydrology variables were also considered in our analysis. We developed regression models in conjunction with a model-selection procedure for each species and habitat type based on the catch-curve residuals from fish populations in hydrologically connected river–reservoir systems in the Ozark Highland and Ouachita Mountain ecoregions, USA. Our results indicated that recruitment of reservoir Freshwater Drum was negatively correlated to annual reservoir retention time. In lotic habitats, Freshwater Drum recruitment was positively correlated with prespawn discharge conditions and negatively correlated with annual flow variability. Similarly, riverine Gizzard Shad recruitment was positively correlated to the frequency of high-flow pulses during the spawning period. Our results indicate that releasing reservoir water to best mimic relatively natural flow patterns may benefit some broadcast-spawning species that occupy both lentic and downstream lotic environments, especially during the spring. This information, combined with future efforts on additional spawning guilds, will provide a foundation for developing holistic river–reservoir water-allocation plans.

Missouri, Oklahoma↗

USGS2021

Fragmentation and streamflow metrics drive prairie chub (Macrhybopsis australis) occurrence in the upper Red River basin

Dam construction threatens global aquatic biodiversity by fragmenting stream networks and altering flow regimes. The negative effects of dams are exacerbated by increased drought periods and associated water withdrawals, especially in semi-arid regions. Stream fishes are particularly threatened owing to their mobile nature and requirement for multiple habitats to complete their life cycles. An understanding of relationships with fragmentation and flow regimes, particularly as coarse-scale (e.g. catchment) constraints on species distributions, is essential for stream fish conservation strategies. Prairie chub ( Macrhybopsis australis ) is a small-bodied minnow (Cyprinidae) with poorly understood ecology endemic to the North American Great Plains. Suspected declines in abundance and extirpations have resulted in conservation interest for prairie chub at state and federal levels. Prairie chub is thought to share its reproductive strategy with pelagic-broadcast spawning minnows (pelagophils). Freshwater pelagic-broadcast spawning fishes have been disproportionately affected by fragmentation and streamflow alteration globally. Relationships of prairie chub occurrence with coarse-scale fragmentation and streamflow metrics were examined in the upper Red River catchment. Occurrence probability was modelled using existing survey data, while accounting for variable detection. The modelled relationships were used to project the distribution of prairie chub in both a wet and dry climatic period. The probability of prairie chub occurrence was essentially zero at sites with higher densities of upstream dams, but increased sharply with increases in flow magnitude, downstream open mainstem, and flood duration. The projected distribution of prairie chub was broader than indicated by naïve occurrence, but similar in both climatic periods. The occurrence relationships are consistent with the hypotheses of pelagic broadcast spawning and represent coarse-scale constraints that are useful for identifying areas of the stream network with higher potential for finer-scale prairie chub conservation and recovery efforts. In addition to informing pelagophil conservation, the relationships are also applicable to pelagic-broadcast spawning fishes in marine environments.

Oklahoma, Texas↗

USGS2021

Refining sampling protocols for cavefishes and cave crayfishes to account for environmental variation

Subterranean habitats support a diverse array of organisms and represent imperative habitats in many conservation strategies; however, subterranean habitats are one of the most difficult environments to study. Accounting for variable sampling detection is necessary to properly evaluate conservation options for rare species such as karst and other groundwater organisms. New sampling methods, such as environmental DNA, show promise to improve stygobiont detection; however, sources of sampling bias are poorly understood. Therefore, our objective was to determine factors affecting detection probability of both visual and environmental DNA (eDNA) surveys for cavefishes and cave crayfishes. We sampled 40 sites across the Ozark Highlands ecoregion in Arkansas, Missouri, and Oklahoma, USA using visual and eDNA surveys. We used occupancy modeling to estimate the detection probability of the two taxa using both survey methods under varying environmental conditions. Overall, eDNA sampling resulted in higher detection probability for cavefishes when compared to visual surveys, whereas visual surveys typically had higher detection probability for cave crayfishes. Greater water volume at the time of sampling was related to lower detection using visual surveys for both taxa, but there was no relationship between eDNA detection and water volume. Detection probability of both cavefishes and crayfishes was higher using visual surveys when sampling units were classified by coarse rather than fine substrate, whereas detection of cave crayfishes surveyed using eDNA was higher in coarse substrate environments. Detection of cavefishes and cave crayfishes was higher via eDNA sampling when water was flowing, but similar sampling conditions resulted in lower detection using visual surveys. Our results indicate detection should be considered when sampling stygobionts even if using traditional visual surveys. Environmental DNA is a useful tool; however, the limitations we identified indicate eDNA for these taxa currently are not adequate to replace traditional surveys in subterranean environments.

Arkansas, Missouri, Oklahoma↗

USGS2021

Riverscape nesting dynamics of Neosho Smallmouth Bass: To cluster or not to cluster?

Aim Hierarchical stream habitat conditions influence patterns of fish abundance and population dynamics. The spawning period is important for stream fishes but coincides with unpredictable environmental conditions and stressors. Thus, identifying habitats that confer suitable spawning is crucial to managing vulnerable fish populations, including narrow-range endemics. Here, we evaluate reach- and catchment-scale habitat features related to Neosho Smallmouth Bass ( Micropterus dolomieu velox ) nest presence, abundance and aggregations (clusters) and quantify nest microhabitat. Location Ozark Highlands ecoregion, USA. Methods We conducted snorkel and habitat surveys from 2016 to 2018 to quantify nest abundance, describe nest cluster characteristics and quantify nest microhabitat. We used field-collected and geospatial variables and developed generalized mixed models to evaluate the influence of multi-scale habitat features on nest cluster presence and nest abundance. Results Nest clusters, scarcely known for other Smallmouth Bass populations, contained 25% of all documented nests. Presence of nests was more likely in warmer stream reaches with wide, shallow channels and more pool habitat. Nest cluster presence was more likely with greater nest densities and earlier in the spawning season. The abundance of Smallmouth Bass nests was related to several reach-scale habitat conditions, with greater nest counts in warmer reaches and reaches with deeper pool habitat. Regardless of cluster behaviour, nesting Smallmouth Bass used similar microhabitats, including a range of depths (0.26–1.85 m), low velocities (<0.1 m/s) and typically gravel substrates. Main conclusions Our results indicate plasticity in nesting ecology within Neosho Smallmouth Bass populations and highlight the need to consider multiple aspects of stream habitat when developing conservation and management plans. The importance of reach-scale habitat features suggests it may be important to limit landscape and channel alterations. Nest clustering behaviour suggests these populations may be vulnerable to human influence during the nesting season, but also provides management opportunities for protection during critical time periods.

Arkansas, Kansas, Missouri, Oklahoma↗

USGS2021

A review of factors affecting PIT tag detection using mobile arrays and use of mobile antennas to detect PIT-tagged suckers in a wadeable Ozark stream

Advantages of passive integrated transponder (PIT) tags are their small size, longevity, and low-cost compared to other tags. PIT tags are often used in fisheries to study movement patterns, survival, or estimate population size. However, PIT tags are limited by their short detection distance. Mobile PIT antennas may increase the utility of PIT tags in fisheries. In this study, we synthesize the current detection efficiency literature on mobile PIT antennas, determine factors influencing PIT-tag detection probability and efficiency for a raft-mounted mobile antenna, and summarize techniques used to increase observations of PIT-tagged fishes with raft-mounted mobile antennas in a wadable stream. Our literature review indicated tag size and orientation were the most-important factors affecting detection probabilities; however, our antenna was primarily influenced by water depth of the tag and distance from the antenna. Detection efficiency was influenced by discharge, turbidity, and sample date. Tracking methods that include targeting key habitats (e.g., rootwads) and using natural features to congregated tagged fishes (e.g., riffles or pinch points) may increase detection efficiency in wadable streams. This is the first formal review of factors affecting mobile PIT antenna detection efficiency. The published literature, combined with our study results, indicate several factors need to be considered prior to mobile PIT antenna tracking.

Arkansas, Oklahomas↗

USGS2021

Movement, recruitment, and abundance relationships of Prairie Chub: An endemic Great Plains cyprinid

The Prairie Chub Macrhybopsis australis is a poorly studied endemic cyprinid of the upper Red River basin and is listed as threatened in Texas and of greatest conservation need in Oklahoma. Hypothesized mechanisms have been proposed to explain the decline of pelagic broadcast spawning minnows including disrupted spawning cues, reduced recruitment, degraded habitat complexity, and reduced water availability and connectivity. Our study objectives were to evaluate Prairie Chub movement, identify spawn timing, and estimate abundance of Prairie Chub at locations in the upper Red River basin. We assessed Prairie Chub movement using a mark-recapture experiment with multiple tag and recapture occasions during late spring through summer (i.e., May-August) of 2019 and 2020. We tagged 5,771 Prairie Chub during summers of 2019 and 2020 and recaptured 213 fish across both summers. We conducted recapture events at approximately 2-week intervals from late May to August of 2019 and 2020. Movement by Prairie Chub was consistently greater than expected under the restricted movement paradigm. The average expected movement distance of the stationary population component was 2 m in 2019 and 3 m in 2020, whereas the expected average movement distance for the mobile population component was 42 m in 2019 and 75 m in 2020. We found no evidence of upstream bias in adult Prairie Chub movement during our study. We processed otoliths for 2,017 age-0 Prairie Chub across 7 rivers and two spawning seasons (i.e., 2019 and 2020). The likelihood of spawning and frequency of observed hatches per spawning date were higher in 2019 compared to 2020. The probability of spawning increased with increasing scaled discharge and average temperature in both 2019 and 2020. Spawning was more likely to occur earlier in the sample season though substantial spatial and temporal variation in spawning success was evident among rivers. The number of successful hatches observed per spawning day was highest in the Pease and Red rivers and lowest in the Salt Fork and South Wichita rivers for both years. We conducted 104 abundance surveys in 2019 and 2020. Our abundance estimates were consistently lower in upstream reaches, higher in downstream reaches, and more variable in mid reaches. We found Prairie Chub abundance was related to several covariates, but abundance did not vary much between years. Overall, adult Prairie Chub abundance was higher in the eastern portion of their range and increased with increasing discharge and turbidity but decreased at higher water temperatures. Adult Prairie Chub abundance had a quadratic relationship with salinity where Prairie Chub density peaked at a salinity of 10 ppt and then declined by nearly 100% when salinities reached 20 ppt. Our juvenile Prairie Chub abundance model had similar but weaker relationships with covariates compared to the adults; however, juvenile abundance was higher in 2020 compared to 2019. Our results indicate conservation of Prairie Chub and ecologically similar species would benefit from maintaining broadly connected habitats (i.e., for movement and drift). We show substantial variation in spawning patterns among rivers that has important implications for developing conservation actions. If agencies are concerned about abundance of Prairie Chub, then management agencies may want to consider the strong relationship with salinity when desalinization projects are proposed. Considering how salinity may narrow the realized niche of Prairie Chub, agencies interested in Prairie Chub persistence may want to prevent large changes in salinity concentrations in the species’ remaining habitat.

Report↗

USGS2020

Survival and movement patterns of Rainbow Trout stocked in a groundwater-influenced warmwater stream

Stocking Rainbow Trout Oncorhynchus mykiss to create additional angling opportunities is common; however, the spatial and temporal dynamics of such stocking practices are unclear in groundwater-influenced, warmwater streams. Our objectives were to determine Rainbow Trout dispersal from a stocking location on Spavinaw Creek, Oklahoma and to quantify apparent survival of two cohorts of Rainbow Trout stocked in November 2018 and February 2019. Rainbow Trout were PIT-tagged prior to autumn ( N = 495) and winter ( N = 605) stocking and located poststocking using both an active floating array and two passive fixed arrays. We actively tracked a 6-km extent every 2–3 weeks poststocking and found that PIT-tagged Rainbow Trout dispersal ranged from 0 to 4 km with ~90% of detected tagged fish remaining within 1 km of the stocking location. Directional movement by stocked Rainbow Trout was evident with upstream movements related to increases in daily water discharge and downstream movements related to decreases in daily discharge. Estimated apparent weekly survival of Rainbow Trout was lowest during the first 2 weeks poststocking (91% and 75% for autumn and spring cohorts, respectively). Apparent weekly survival rates for both autumn and spring stocked fish increased through winter and spring when maximum water temperatures were below 25℃, reaching survival rates of 99% by the end of spring. Rainbow Trout persisted in Spavinaw Creek throughout the summer; however, the weekly apparent survival rate declined for both cohorts (93%) when maximum daily water temperatures exceeded 25°C. Our results can be used to guide stocking decisions in similar warmwater streams and suggest that Rainbow Trout persist through spring and summer poststocking under the conditions encountered during our study.

Oklahoma↗

USGS2020

Age-0 Smallmouth Bass abundance depends on physicochemical conditions and stream network position

Stream fish survival and recruitment are products of a physicochemical environment that affects growth and provides refuge; yet, the drivers of spatiotemporal variation in juvenile fish abundance remain unclear. Understanding how physicochemical conditions drive spatial and temporal patterns in fish abundances provides insight into how conditions across stream networks influence fish population success, thereby providing direction to managers about the types and locations of conservation actions that would be most beneficial. Using snorkel and habitat surveys of 120 sites sampled from 2015 to 2017, we evaluated the multiscale relationships among physicochemical features, hydrology, and age-0 Smallmouth Bass ( Micropterus dolomieu velox ) abundance in relation to network spatial position. Abundance of age-0 bass was spatiotemporally variable in relation to a July streamflow–network position interaction, a pool depth–stream size interaction, and a stream temperature–network position interaction. High flows at the end of the nesting season were related to lower age-0 abundance, but this effect was dampened in stream reaches in close proximity to larger mainstems. In small streams, reaches with deeper pool habitat supported higher age-0 bass abundances, but this trend was not apparent in larger tributaries and mainstem systems. Generally, colder streams had lower age-0 Smallmouth Bass abundance, though this relationship was not apparent in reaches adjacent to larger streams that generally supported higher age-0 bass abundances. Conservation actions that (1) facilitate habitat connectivity within and among streams, (2) limit future anthropogenic practices that alter natural geomorphology by creating shallower stream channels, and (3) maintain adequate flow magnitude and timing to support channel complexity (e.g., deeper pools within smaller catchments) would be most beneficial to supporting rearing habitat for age-0 riverine Smallmouth Bass.

Arkansas, Missouri, Oklahoma↗

USGS2020

Complex patterns of genetic and morphological differentiation in the Smallmouth Bass subspecies (Micropterus dolomieu dolomieu and M. d. velox) of the Central Interior Highlands

Due to geologic processes and recent anthropogenic introductions, patterns of genetic and morphological diversity within the Smallmouth Bass ( Micropterus dolomieu ), which are endemic to the central and eastern United States (USA), are poorly understood. We assessed genetic and morphological differentiation between the widespread Northern Smallmouth Bass ( M. d. dolomieu ) and the more restricted Neosho Smallmouth Bass ( M. d. velox ) where their ranges meet in the Central Interior Highlands ecoregion (CIH). Data from 14 microsatellite loci were used to conduct S TRUCTURE and principal components analyses to evaluate diversity across populations and screen for hybridization with sympatric Spotted Bass ( M. punctulatus ). We also tested for morphological differences using five morphometric traits and one meristic trait. We found support for three genetic clusters corresponding to previously described taxonomic variation; five clusters largely corresponding to river systems; and nine clusters representing hierarchical population structure within both ranges. We found evidence of a unique genetic cluster in tributaries of the White River within the Northern Smallmouth Bass range and admixture between the subspecies throughout the Neosho range. We also found evidence of morphological differentiation between subspecies; Neosho Smallmouth Bass exhibited larger head length than Northern Smallmouth Bass relative to total length, and there was a significant interaction of subspecies and orbital length, possibly indicating differential growth patterns between subspecies. Our results reveal multiple levels of divergence, suggesting the CIH harbors greater and more complex Smallmouth Bass diversity than previously thought.

Arkansas, Illinois, Kansas, Mississippi, Missouri,↗

USGS2020

Seasonal movements and tributary-specific fidelity of blue sucker Cycleptus elongatus in a Southern Plains riverscape

This study used acoustic telemetry and a multistate Cormack–Jolly–Seber model to determine the seasonal movement patterns of blue sucker Cycleptus elongatus from 2015 to 2017. Several hypotheses were ranked using AIC c , and it was determined that the movement patterns of blue suckers in a mainstem reach below a hydropower dam ( i.e. , tailwater) differed from those of blue suckers tagged in the major tributaries (perennial with stream order >3). This study estimated a low probability (≤0.13) blue suckers would leave the tailwater reach at any time during the study. Conversely, blue suckers tagged in the major tributaries had a high probability (≥0.88) of leaving after the spawning season (February–May). Blue suckers tagged in the major tributaries displayed a high probability (0.83) of returning to the tributaries in the spawning season of 2016 when discharges were high. Blue suckers also had a higher probability of fidelity to the tributary where they were tagged (0.65) rather than straying to different tributaries (0.18). The majority of tagged blue suckers that strayed selected the only undammed tributary in the study area. In 2017, spring discharges were low, and the probability of blue suckers returning to any major tributary was low (0.19), with little difference in the probability of displaying site fidelity (0.10) vs. straying (0.09).

Oklahoma↗

USGS2020

Preliminary investigation of the critically imperiled Caney Mountain cave crayfish Orconectes stygocaneyi Hobbs III, 2001 (Decapoda: Cambaridae) in Missouri, USA

The Caney Mountain cave crayfish ( Orconectes stygocaneyi ) is one of North America's rarest crayfish, endemic to one cave in southern Missouri, USA. The species is listed as 'critically imperiled' by Missouri, and 'threatened' by the American Fisheries Society. Previously, only 15 crayfish have been observed in Mud Cave, and only two have been collected (for original species description). We aimed to collect the first natural history data on the species and search adjacent caves and springs for additional populations. Twelve visual searches and supplemental trapping over four years, in all seasons, yielded 69 O. stygocaneyi (including 11 young-of-year) observations and capture of 22 crayfish, including one ovigerous female. Visual searches of nearby caves and springs yielded no O. stygocaneyi records. However, multiple surveys of those caves and springs, using environmental DNA detected the species in one additional cave adjacent to Mud Cave, but only during spring high flow events when the caves may be ephemerally connected. Orconectes stygocaneyi 's distribution is among the most restricted of any North American crayfish, and further evaluation of its conservation status designations might be warranted. Long term conservation of O. stygocaneyi would benefit from management practices promoting sustained, unimpacted surface runoff within Mud Cave's recharge area.

Missouri↗

USGS2020

Gastric mill age estimates for ringed crayfish Faxonius neglectus neglectus (Faxon) and the influence of temperature on band formation

Counting bands via the gastric mill is a potential direct approach for ageing crayfish; however, the validity of ageing crustaceans using the gastric mill is unknown. Our study objectives were to 1) compare gastric mill age estimates to a traditional aging technique, 2) compare ageing precision among the ossicles, and 3) examine the effects of temperature on gastric mill band formation. From 2017–2018, we collected 681 ringed crayfish Faxonius neglectus neglectus (Faxon) from ten Ozark Highland streams. Our length-frequency analysis reflected seven age classes, whereas gastric mill age estimates indicated individuals were up to 10 yr of age. The length-frequency analysis age estimates showed good congruence (± 1 yr) with age estimates from the gastric mill 78% of the time. The coefficient of variation (CV) of age estimates from gastric mill bands between our readers was 29.7%. Ageing precision was highest when using the zygocardiac ossicles (CV = 12.4%). Gastric mill age estimates for known age-1 crayfish from a thermally stable laboratory were not significantly different from one, whereas age estimates from a thermally varying laboratory were greater than one. Our results indicate molting frequency does not control gastric mill band formation, and temperature plays a role in band formation.

Arkansas, Missouri, Oklahoma↗

USGS2020

The influence of groundwater on the population size and total length of warmwater stream fishes

Groundwater influences stream environments in numerous ways including structuring biotic assemblages. However, associations between groundwater influence and warmwater fish assemblages are under-studied. We examined relationships between groundwater contribution, population size, and total length (TL) for 5 warmwater fishes at 32 stream reaches in the Ozark Highlands ecoregion. When we controlled for distance from an impoundment, population size and TL were significantly related to groundwater influence for all 5 species. Sunfishes were significantly less abundant in reaches with high levels of groundwater contribution (HGC reaches), whereas Ambloplites rupestris (Rock Bass) and Nocomis asper (Redspot Chub) TLs were significantly greater at HGC reaches. Reach-scale groundwater contribution explained nearly 4 times more unexplained variation among fish densities than did TL. Our study provides insight into the structuring role of groundwater on warmwater fish populations.

Missouri, Oklahoma↗

USGS2019

Coldwater periods in warmwater streams: Microhabitat shifts from autumn to winter by Smallmouth Bass

Seasonal and life stage variation in microhabitat use is an important driver of fish survival and bioenergetics, but knowledge of microhabitat selection during colder periods is generally lacking in warmwater streams. Our objective was to examine changes in microhabitat selection by age‐0 (TL ≤ 85 mm) and age‐1+ (TL > 85 mm) Smallmouth Bass Micropterus dolomieu from autumn to winter in streams of the southwest Ozark Highlands ecoregion. We examined microhabitat selection (depth, velocity, substrate, cover, and temperature) during autumn 2017 (Spavinaw Creek) and winter 2018 (Spavinaw and Spring creeks). During autumn and winter, age‐0 fish selected intermediate depths of approximately 1 m, whereas age‐1+ fish selected the deepest available habitat. Water depth selection was similar across seasons for both life stages. Both age‐0 and age‐1+ bass selected areas of zero velocity, increasing substrate size, instream cover, and warmwater patches in autumn. Velocity selection differed between autumn and winter with both life stages showing stronger selection of low velocity patches (0.1–0.3 m/s) during winter. Both life stages shifted to having no substrate selection during winter. Age‐1+ bass were more likely than age‐0 bass to use cover during autumn, but this relationship shifted in winter to the age‐0 cohort increasing their selection of cover and the age‐1+ cohort decreasing their selection. Both age‐0 and age‐1+ bass selected relatively warmer habitats during autumn, but not winter. Collectively, our results highlight both seasonal and life stage variation in Smallmouth Bass microhabitat selection. As our understanding of habitat selection across seasons develops, the management of Smallmouth Bass will undoubtedly improve. Changing environmental conditions over time may influence available habitat as well as the timing of seasonal shifts across a range of spatial and temporal scales, including microhabitat patches.

Arkansas, Oklahoma↗

USGS2019

Age and growth of Freshwater Drum and Gizzard Shad occupying two reservoir-river complexes with different groundwater contributions

Restoring groundwater flow is a management option that improves water temperature regimes and benefits fishes. Although this strategy applies more readily to river systems, the thermal character of reservoirs is heavily influenced by inflowing rivers. We examined differences in age, structure, and growth of both Freshwater Drum Aplodinotus grunniens and Gizzard Shad Dorosoma cepedianum that occupy catchments with varying groundwater contributions in the south‐central United States. Seepage run data indicated that the Kiamichi River was losing surface water to groundwater in summer 2016, whereas groundwater inflows were apparent in the Elk River basin. Summer 2016 data showed that the Elk River had cooler water temperatures than the Kiamichi River and Grand Lake O’ the Cherokees water temperatures were similar to those in the incoming Elk River. We found higher densities of older Freshwater Drum and Gizzard Shad (maximums of 32 and 8 years old, respectively) in samples from the Grand basin than among fish that were sampled from the Kiamichi River basin (21 and 6 years old, respectively). Freshwater Drum grew at similar rates in both basins even though they reached larger maximum lengths in the Grand basin (649 mm TL) than in the Kiamichi River basin (600 mm). The average asymptotic length was greater for the Kiamichi population ( L ∞ = 613 mm) than for the Grand population ( L ∞ = 557 mm). Gizzard Shad from the Grand basin were larger than those from the Kiamichi River basin, though the latter population grew faster initially (Brody growth coefficient: K = 0.787 versus K = 0.179, respectively), but they had smaller asymptotic length ( L ∞ = 206 mm versus L ∞ = 343 mm). The role that groundwater plays in temperature regulation in these basins partially explains the observed differences. Our results suggest that the metabolic theory of ecology can be applied to fisheries management at a finer spatial scale.

Oklahoma↗

USGS2019

The accuracy of ecological flow metrics derived using a physics-based distributed rainfall-runoff model in the Great Plains, USA

The development of a hydrologic foundation, essential for advancing our understanding of flow-ecology relationships, was developed using the high-resolution physics-based distributed rainfall–runoff model V flo in a semi-arid region. We compared the accuracy and bias associated with flow metrics that were generated using V flo , gauge data, and drainage area ratios at both a daily and monthly time step in the Canadian River basin, USA. First, we calibrated and applied bias correction to the V flo model to simulate streamflow at ungauged catchment locations. Next, flow metrics were calculated using simulated and observed data from stream gauge locations. We found discharge predictions using V flo were more accurate than drainage area ratios. General correspondence between predicted discharge and the gauge data was apparent; however, flow metrics calculated using the V flo output did not accurately represent flow variability. Results from the V flo model showed systematic discharge over-predictions in the upper basin and isolated over-predictions in the lower basin, likely due to hail events and sparse rainfall data across the large catchment. Goodness-of-fit statistics (Nash–Sutcliffe efficiency, root-mean square error, and the coefficient of variation) indicated the drainage area ratio and V flo were more accurate at a monthly rather than daily time step, even after quantile mapping. This finding limits the number of streamflow metrics available to develop ecological models, but more importantly, the coarser resolution may hinder our understanding of ecological processes that occur at a submonthly time step. Our approach provides a framework for selecting flow metrics that best represent hydrologic patterns across a large semi-arid catchment with the necessary accuracy to address the ecological questions of interest.

New Mexico, Oklahoma, Texas↗

USGS2019

Using environmental DNA (eDNA) to assess the presence of cavefish and cave crayfish populations in caves of the Ozark Highlands

Many cavefishes and cave crayfishes are considered of conservation concern; however, sampling these species is inherently difficult given their occupied environments. The goal of our project was to verify the presence of select karst organisms while developing the foundation for sampling approaches that might be useful to conservation and management agencies. Our project objectives were to develop assays to amplify deoxyribonucleic acid (DNA) from several species of Ozark cavefishes and cave crayfishes and complete an initial surveillance of locations across the Ozark Highlands using environmental DNA (eDNA). Using DNA either provided by agency cooperators or that we extracted from tissue samples, we PCR amplified and then sequenced the Cytochrome Oxidase 1 (CO1) gene for cave crayfishes and the NADH Dehydrogenase Subunit 2 (ND2) gene for cavefishes. We developed species-specific primers and probes for five cave crayfishes and two cavefishes. From February 2017 to May 2017, we sampled 1–5 sampling units from 42 caves, wells, and springs (i.e., sites) using eDNA and traditional visual surveys. We measured physicochemical parameters at each sampling unit to estimate detection probability associated with both techniques. We also calculated two occupancy covariates for each site using geospatial data. We successfully amplified Troglichthys rosae DNA from the environment and detected DNA representing this species at 24 of 40 sites. At 16 of the sites where we detected T. rosae DNA, we did not visually observe the species. Although our assay for Typlichthys eigenmanni successfully amplified the target DNA from the environment, it also resulted in false absences where the species was visually confirmed. Using eDNA to detect cave crayfishes was much more difficult. The assay for Cambarus subterraneus did not work for eDNA samples and we were unable to pick up DNA from the environment, even at locations where it was visually confirmed. Alternatively, the eDNA surveys worked well for C. tartarus and we were able to amplify DNA at every site where it was visually observed. Our assay for C. aculabrum was based on a single sample obtained from GenBank, and did not amplify eDNA from field samples. Lastly, our eDNA results from samples in the known range of Orconectes stygocaneyi suggested the species may be found at an additional cave. Detection using eDNA based on our O. stygocaneyi assay was likely low because it was designed from a pseudogene; however, positive eDNA samples were sequenced to confirm species-specific DNA. Detection probability of both cavefishes and cave crayfishes varied by survey technique and was influenced by water volume, water clarity, water velocity, and substrate. Detection of cavefishes and cave crayfishes via visual surveys decreased when water volume increased, whereas detection using eDNA increased with greater water volume. Detection between taxa using either sample method was highest in habitats classified by fine substrates, except for eDNA detection of crayfishes which was greatest in coarse substrates. Detection of cavefishes increased with water clarity, but detection of cave crayfishes increased with turbidity. Detection probability of both cavefishes and crayfishes using eDNA increased slightly with water velocity, but decreased with visual surveys as water velocity increased. Occupancy by both taxa was positively related to particular geologic series. Crayfish occupancy was negatively related to fine-scale anthropogenic disturbance (i.e., 500-m buffer around the site), whereas crayfish showed no relationship with disturbance. Our results suggest possible range extensions, provide insights to factors driving detection using both sample techniques, and suggest areas where recharge zones may be shared among caves. Future efforts focused on a comprehensive evaluation of genetic diversity among cave crayfishes to improve assay design could improve detection and the applicability of eDNA as a supplemental and non-invasive sampling approach.

Cooperator Science Series↗

USGS2019

Multiscale habitat factors explain variability in stream fish occurrence in the Ozark Highlands ecoregion, USA

The dynamic, multiscale nature of stream systems makes it challenging to establish basic ecological principles to guide stream fish conservation and management. For example, finer-scale instream habitat is often constrained by coarser-scale characteristics driving observed species distributions. Additionally, instream environmental variability can result in patchy species distributions within general upstream–downstream occurrence patterns (i.e., variation around a common theme). Groundwater contribution, an often-overlooked habitat characteristic in warmwater systems, has numerous influences on the instream environment and can play a role in fish habitat-use patterns and assemblage structure. We identified multiscale instream habitat characteristics associated with the occurrence probability of 20 Ozark Highland stream fishes. Fishes were surveyed using tow-barge electrofishing in 76 channel unit complexes (i.e., riffle-to-riffle habitat sequences) nested in 20 reaches of northwest Oklahoma and southwest Missouri. We used a multiscale, multispecies generalized linear mixed model to identify relationships between fish occurrence and both channel unit complex- and reach-scale variables. Stream fishes were more likely to occur in larger or deeper channel unit complexes. Fish occurrence was also associated with different levels of reach-scale groundwater contribution, bankfull width-to-depth ratio, and percent instream cover. Ten fishes, typically associated with warmer water temperatures, had lower occurrence probabilities in reaches with higher groundwater contribution, whereas Banded Sculpin Cottus carolinae and Creek Chub Semotilus atromaculatus occurrence probabilities were higher. There was no relationship between occurrence probabilities and instream cover for 11 fishes. The occurrence probabilities in relation to varying amounts of instream cover for the other nine stream fishes was dependent on bankfull width-to-depth ratio, where the direction and magnitude of the relationships varied among stream fishes. The variation in occurrence relationships can be attributed to thermal preferences, environmental interactions, and the use of multiple habitat types. Our findings demonstrate the multiscale nature of fish occurrence relationships and how conservation and management may benefit from considering this complexity when developing holistic instream habitat enhancement strategies.

Missouri, Oklahoma↗