Geology topics

Shane Flinn

Publications and source records attributed to Shane Flinn.

4 recordsLinked to original sources

USGS2026

A framework for estimating age and growth using sibship relationships inferred from genomic data

Pedigree reconstruction based on genomic data offers a novel approach for estimating age and growth in wild populations. However, frameworks that use reconstructed pedigrees to parameterize growth models have not been available. We developed a sibship age and growth framework and evaluated the approach using simulation and an empirical application to Sea Lamprey ( Petromyzon marinus ) age and growth analysis. Simulation research revealed that the framework may be widely applicable to semelparous fishes. Applicability to iteroparous fishes was constrained to scenarios in which the percentage of multi-age sibling groups was low. Age assignment using the framework was unbiased for sibling groups first captured at younger ages. Age assignment for sibling groups first captured at older ages (after growth rate had substantially slowed) was biased low due to the hierarchal approach that we adopted to estimate sibling group age-at-first capture. However, this did not result in biased growth parameter estimates. Model output allowed for identification of unreliable age assignments. Finally, the empirical application provided evidence that the framework could address knowledge gaps that have been challenging to address with established age and growth methods.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2026

Using structured decision making to evaluate the tradeoffs of selective fish passage

Dams have dramatically altered rivers and are a major contributor to native fish population declines. However, many dams serve important ecological, social, and economic functions, such as flood control, invasive species control, and provision of recreational opportunities. Therefore, dam removal is often contentious among stakeholders and involves making tradeoffs among multiple competing objectives. This research uses structured decision making to evaluate the ecological, social, and economic consequences and tradeoffs of enhancing connectivity for migratory fishes in the Boardman River, Michigan. We describe efforts to engage a diverse group of stakeholders to elicit their objectives under various fish passage alternatives. We used multi-attribute tradeoff methods to help stakeholders weigh the costs and benefits of enhancing connectivity for several fish species with varying life history traits and initial distributions. We found that the optimal alternative was passage of native fishes only; however, the optimal alternative varied based on the weight stakeholders might place on each objective. We created four objective weighting scenarios to evaluate the sensitivity of the optimal alternative to changes in objective weights. This research will help inform decision-makers on fish passage alternatives that are preferred by stakeholders and that are likely to achieve their objectives.

Michigan↗

USGS2024

Predicting the response of fish populations to changes in river connectivity using individual-based models

Barrier removal restores physical stream processes and improves accessibility of critical habitats to migratory fishes. Although increasing connectivity benefits stream systems and migratory fishes, barrier removals may also lead to increased production of undesirable or invasive migratory species, as well as myriad other concerns (e.g., reduced recreational opportunities). Few studies have predicted how migratory fish populations will respond to enhanced fish passage, despite being a critical step in the decision-making process. We developed an individual-based model framework to forecast the response of migratory fishes to changes in connectivity and applied the framework to six species under multiple fish passage scenarios for the FishPass project on the Boardman River, MI, which outlets into Lake Michigan. Population response to barrier removal was species-specific and varied based on initial population size and distribution within the watershed, number of fish passed upstream, and species life history traits. Species restricted to below the barrier prior to removal benefitted most; non-native species were found to have greater production potential under full passage scenarios than native Great Lakes species. With increasing passage of non-native Pacific salmonids, steelhead Oncorhynchus mykiss surpassed brook trout Salvelinus fontinalis as the system’s dominant species. Our results will inform decision-makers on management alternatives for fish passage on the Boardman River and our model framework can be modified, updated, and applied to additional river systems as more barrier removal projects are conducted in the future.

Michigan↗

USGS2021

What can commercial fishery data in the Great Lakes reveal about juvenile sea lamprey (Petromyzon marinus) ecology and management?

The Laurentian Great Lakes of North America support a large and profitable freshwater fishery, but one continuously beset by parasitism from the invasive sea lamprey ( Petromyzon marinus ). Despite being the life stage that inflicts damage to the fishery, therefore necessitating a bi-national control program, our knowledge of juvenile sea lamprey ecology is poor and their response to control efforts are not assessed. Incidental capture of juvenile sea lamprey by commercial fishers is one means to collect data on this enigmatic life stage, and in Lake Huron such data have been collated since 1967. Here, we explore incidental captures of juvenile sea lamprey and their hosts from northern Lake Huron between 1987 and 2017 ( n = 33,246 observations) to address four objectives. Firstly, we document collection efforts by fishers to provide historical context to the dataset. Secondly, we pose and test a series of questions related to fishery encounter, host selection, growth, distribution, and sex ratio to highlight how these types of data can be informative regarding juvenile sea lamprey ecology. Results presented here could be used to develop biological hypotheses to be addressed in future work. Thirdly, we directly assessed whether juvenile sea lamprey capture data could be useful in corroborating trends observed in adult sea lamprey abundance and wounding, as well as in identifying abundance and wounding hotspots. Lastly, we summarize research and outreach efforts that have benefited from the capture of juvenile sea lamprey in recent years.

Great Lakes↗