Geology topics

Robert S. Arkle

Publications and source records attributed to Robert S. Arkle.

33 records · Page 2Linked to original sources

USGS2018

Thresholds and hotspots for shrub restoration following a heterogeneous megafire

Context Reestablishing foundational plant species through aerial seeding is an essential yet challenging step for restoring the vast semiarid landscapes impacted by plant invasions and wildfire-regime shifts. A key component of the challenge stems from landscape variability and its effects on plant recovery. Objectives We assessed landscape correlates, thresholds, and tipping points for sagebrush presence from fine-scale sampling across a large, heterogeneous area burned the previous year, where we were able to quantify soil surface features that are typically occluded yet can strongly affect recovery patterns. Methods Hypothesis testing and binary-decision trees were used to evaluate factors affecting initial sagebrush establishment, using 2171 field plots (totaling ~ 2,000,000 m 2 sampled) over a 113,000-ha region. Results Sagebrush established in 50% of plots where it was seeded, a > 12-fold greater establishment frequency than in unseeded areas. Sagebrush establishment was enhanced in threshold-like ways by elevation (> 1200 m ASL), topographic features that alter heatload and soil water, and by soil-surface features such as “fertile islands” that bore the imprint of pre-fire sagebrush. Sagebrush occupancy had a negative, linear relationship with exotic-annual grass cover and parabolic relationship with perennial bunchgrasses (optimal at 40% cover). Conclusions Our approach revealed interactive, ecological relationships such as novel soil-surface effects on first year establishment of sagebrush across the burned landscape, and identified “hot spots” for recovery. The approach could be expanded across sites and years to provide the information needed to explain past seeding successes or failures, and in designing treatments at the landscape scale.

Idaho↗

USGS2018

Annotated bibliography of scientific research on greater sage-grouse published since January 2015

The greater sage-grouse ( Centrocercus urophasianus ; hereafter GRSG) has been a focus of scientific investigation and management action for the past two decades. The 2015 U.S. Fish and Wildlife Service listing determination of “not warranted” was in part due to a large-scale collaborative effort to develop strategies to conserve GRSG populations and their habitat and to reduce threats to both. New scientific information augments existing knowledge and can help inform updates or modifications to existing plans for managing GRSG and sagebrush ecosystems. However, the sheer number of scientific publications can be a challenge for managers tasked with evaluating and determining the need for potential updates to existing planning documents. To assist in this process, the U.S. Geological Survey (USGS) has reviewed and summarized the scientific literature published since January 1, 2015. To identify articles and reports published about GRSG, we first conducted a structured search of three reference databases (Web of Science, Scopus, and Google Scholar) using the search term “greater sage-grouse.” We refined the initial list of products by (1) removing duplicates, (2) excluding products that were not published as research or scientific review articles in peer-reviewed journals or as formal government technical reports, and (3) retaining only those products for which GRSG or their habitat was a research focus. We summarized the contents of each product by using a consistent structure (background, objectives, methods, location, findings, and implications) and assessed the content of each product relevant to a list of 31 management topics. These topics include GRSG biology and habitat characteristics along with potential management actions, land uses, and environmental factors related to GRSG management and conservation. We also noted which articles/reports created new geospatial data. The final search was conducted on January 6, 2018, and application of our criteria resulted in the inclusion of 169 published products (2 of these products were published corrections to journal articles). The management topics most commonly addressed were GRSG behavior or demographics and GRSG habitat selection or habitat characteristics at broad or site scales. Few products addressed captive breeding, recreation, wild horses and burros, and range management structures (including fences). We include in this annotated bibliography the full citation, product summary, and management topics addressed by each product. The online version of this bibliography ( https://apps.usgs.gov/gsgbib/index.php ) is searchable by topic and location and includes links to the original publications. A substantial body of literature has been compiled based on research explicitly related to the conservation, management, monitoring, and assessment of GRSG. These studies may inform planning and management actions that seek to balance conservation, economic, and social objectives and manage diverse resource uses and values across the western United States. The review process for this product included requesting input on each summary from one or more authors of the original peer-reviewed article or report and a formal review of the entire document by three independent reviewers and, subsequently, the USGS Bureau Approving Official. This process is consistent with USGS Fundamental Science Practices.

Open-File Report↗

USGS2018

An introduction and practical guide to use of the Soil-Vegetation Inventory Method (SVIM) data

Long-term vegetation dynamics across public rangelands in the western United States are not well understood because of the lack of large-scale, readily available historic datasets. The Bureau of Land Management’s Soil-Vegetation Inventory Method (SVIM) program was implemented between 1977 and 1983 across 14 western states, but the data have not been easily accessible. We introduce the SVIM vegetation cover dataset in a georeferenced, digital format; summarize how the data were collected; and discuss potential limitations and biases. We demonstrate how SVIM data can be compared with contemporary monitoring datasets to quantify changes in vegetation associated with wildfire and the abundance of exotic invasive species. Specifically, we compare SVIM vegetation cover data with cover data collected by BLM’s Assessment, Inventory, and Monitoring (AIM) program (2011–2016) in a focal area in the northern Great Basin. We address issues associated with analyzing and interpreting data from these distinct programs, including differences in survey methods and potential biases introduced by spatial and temporal variation in sampling. We compared SVIM and AIM survey methods at 44 plots and found that percent cover estimates had high correspondence for all measured functional groups. Comparisons between historic SVIM data and recent AIM data documented significant declines in the occupancy and cover of native shrubs and native perennial forbs , and a significant increase in exotic annual forbs. Wildfire was a driver of change for some functional groups, with greater change occurring in AIM plots that burned between the two time periods compared with those that did not. Our results are consistent with previous studies showing that many native shrub-dominated plant communities in the Great Basin have been replaced by exotic annuals. Our study demonstrates that SVIM data will be an important resource for researchers interested in quantifying vegetation change through time across public rangelands in the western United States.

Rangeland Ecology and Management↗

USGS2015

Effects of changing climate on aquatic habitat and connectivity for remnant populations of a wide-ranging frog species in an arid landscape

Amphibian species persisting in isolated streams and wetlands in desert environments can be susceptible to low connectivity, genetic isolation, and climate changes. We evaluated the past (1900–1930), recent (1981–2010), and future (2071–2100) climate suitability of the arid Great Basin (USA) for the Columbia spotted frog ( Rana luteiventris ) and assessed whether changes in surface water may affect connectivity for remaining populations. We developed a predictive model of current climate suitability and used it to predict the historic and future distribution of suitable climates. We then modeled changes in surface water availability at each time period. Finally, we quantified connectivity among existing populations on the basis of hydrology and correlated it with interpopulation genetic distance. We found that the area of the Great Basin with suitable climate conditions has declined by approximately 49% over the last century and will likely continue to decline under future climate scenarios. Climate conditions at currently occupied locations have been relatively stable over the last century, which may explain persistence at these sites. However, future climates at these currently occupied locations are predicted to become warmer throughout the year and drier during the frog's activity period (May – September). Fall and winter precipitation may increase, but as rain instead of snow. Earlier runoff and lower summer base flows may reduce connectivity between neighboring populations, which is already limited. Many of these changes could have negative effects on remaining populations over the next 50–80 years, but milder winters, longer growing seasons, and wetter falls might positively affect survival and dispersal. Collectively, however, seasonal shifts in temperature, precipitation, and stream flow patterns could reduce habitat suitability and connectivity for frogs and possibly other aquatic species inhabiting streams in this arid region.

Ecology and Evolution↗

USGS2015

Persistence at distributional edges: Columbia spotted frog habitat in the arid Great Basin, USA

A common challenge in the conservation of broadly distributed, yet imperiled species is understanding which factors facilitate persistence at distributional edges, locations where populations are often vulnerable to extirpation due to changes in climate, land use, or distributions of other species. For Columbia spotted frogs (Rana luteiventris) in the Great Basin (USA), a genetically distinct population segment of conservation concern, we approached this problem by examining (1) landscape-scale habitat availability and distribution, (2) water body-scale habitat associations, and (3) resource management-identified threats to persistence. We found that areas with perennial aquatic habitat and suitable climate are extremely limited in the southern portion of the species’ range. Within these suitable areas, native and non-native predators (trout and American bullfrogs [Lithobates catesbeianus]) are widespread and may further limit habitat availability in upper- and lower-elevation areas, respectively. At the water body scale, spotted frog occupancy was associated with deeper sites containing abundant emergent vegetation and nontrout fish species. Streams with American beaver (Castor canadensis) frequently had these structural characteristics and were significantly more likely to be occupied than ponds, lakes, streams without beaver, or streams with inactive beaver ponds, highlighting the importance of active manipulation of stream environments by beaver. Native and non-native trout reduced the likelihood of spotted frog occupancy, especially where emergent vegetation cover was sparse. Intensive livestock grazing, low aquatic connectivity, and ephemeral hydroperiods were also negatively associated with spotted frog occupancy. We conclude that persistence of this species at the arid end of its range has been largely facilitated by habitat stability (i.e., permanent hydroperiod), connectivity, predator-free refugia, and a commensalistic interaction with an ecosystem engineer. Beaver-induced changes to habitat quality, stability, and connectivity may increase spotted frog population resistance and resilience to seasonal drought, grazing, non-native predators, and climate change, factors which threaten local or regional persistence.

California, Idaho, Oregon, Nevada, Utah↗

USGS2015

Sampling animal sign in heterogeneous environments: how much is enough?

Animal ecologists often use animal sign as a surrogate for direct observation of organisms, especially when species are secretive or difficult to observe. Spatial heterogeneity in arid environments makes it challenging to consistently detect and precisely characterize animal sign, which can bias estimates of animal abundance or habitat use. Piute ground squirrels ( Urocitellus mollis ) and Owyhee harvester ants ( Pogonomyrmex salinus ) live in arid environments and are fossorial, which can make them difficult to observe directly. Their relative abundance can be assessed using sign (i.e., burrows and nests). We implemented an over-sampling framework (i.e., recorded an excessive amount of information) with two observers to 1) identify a sampling intensity that balanced precision with our resource constraints, and 2) assess classification and detection of squirrel burrows and ant nests across vegetation conditions. We sampled 20 1-ha plots for ground squirrel burrows and ant nests using six 4 m × 100 m belt transects. Analyses of precision and sampling effort indicated that three belt transects covering 1200 m 2 per ha provided sufficient precision, while minimizing effort. Regardless of vegetation conditions, counts by two observers were strongly correlated for ground squirrel burrows ( r = 0.99, P < 0.001, df = 18; slope = 0.92) and harvester ant nests ( r = 0.99, P < 0.001, df = 18; slope = 1.01) indicating observer consistency and perhaps high detection probability. These findings illustrate an approach for evaluating sampling designs in many ecological contexts.

Journal of Arid Environments↗

USGS2015

Challenges of establishing big sgebrush ( Artemisia tridentata ) in rangeland restoration: effects of herbicide, mowing, whole-community seeding, and sagebrush seed sources

The loss of big sagebrush (Artemisia tridentata Nutt.) on sites disturbed by fire has motivated restoration seeding and planting efforts. However, the resulting sagebrush establishment is often lower than desired, especially in dry areas. Sagebrush establishment may be increased by addressing factors such as seed source and condition or management of the plant community. We assessed initial establishment of seeded sagebrush and four populations of small outplants (from different geographies, climates, and cytotypes) and small sagebrush outplants in an early seral community where mowing, herbicide, and seeding of other native plants had been experimentally applied. No emergence of seeded sagebrush was detected. Mowing the site before planting seedlings led to greater initial survival probabilities for sagebrush outplants, except where seeding also occurred, and these effects were related to corresponding changes in bare soil exposure. Initial survival probabilities were > 30% greater for the local population of big sagebrush relative to populations imported to the site from typical seed transfer distances of ~320–800 km. Overcoming the high first-year mortality of outplanted or seeded sagebrush is one of the most challenging aspects of postfire restoration and rehabilitation, and further evaluation of the impacts of herb treatments and sagebrush seed sources across different site types and years is needed.

Rangeland Ecology and Management↗

USGS2015

Bioaccumulation trends of arsenic and antimony in a freshwater ecosystem affected by mine drainage

We compared As and Sb bioaccumulation and biomagnification when these metalloids co-occurred at varying environmental concentrations in a stream and wetlands near a contaminated mine site in Idaho (USA). We measured As and Sb concentrations in water and substrate samples, and in tissues of organisms representing several trophic levels. Bioaccumulation of both As and Sb was observed in stream organisms with the following trend of bio-diminution with increasing trophic level: primary producers > tadpoles > macroinvertebrates > trout. We also note reductions in metalloid concentrations in one of two stream remediation reaches engineered within the past 17 years to ameliorate metalloid contamination in the stream. Several wetlands contained thick microbial mats and were highly populated with boreal toad tadpoles that fed on them. The mats were extremely contaminated (up to 76 564 mg kg –1 As and 675 mg kg –1 Sb) with amorphous As- and Sb-bearing minerals that we interpret as biogenic precipitates from geomicrobiological As- and Sb-cycling. Ingested mat material provided a direct source of metalloids to tadpoles, and concentrations of 3867 mg kg –1 (As) and 375 mg kg –1 (Sb) reported here represent the highest whole body As and Sb levels ever reported in living tadpoles. The bulk of tadpole metalloid burden remained in the gut despite attempts to purge the tadpoles prior to analysis. This study adds to a number of recent investigations reporting bioaccumulation, but not biomagnification, of As and Sb in food webs. Moreover, our results suggest that tadpoles, in particular, may be more resistant to metalloid contamination than previously assumed.

Environmental Chemistry↗

USGS2014

Long-term effects of seeding after wildfire on vegetation in Great Basin shrubland ecosystems

1. Invasive annual grasses alter fire regimes in shrubland ecosystems of the western USA, threatening ecosystem function and fragmenting habitats necessary for shrub-obligate species such as greater sage-grouse. Post-fire stabilization and rehabilitation treatments have been administered to stabilize soils, reduce invasive species spread and restore or establish sustainable ecosystems in which native species are well represented. Long-term effectiveness of these treatments has rarely been evaluated. 2. We studied vegetation at 88 sites where aerial or drill seeding was implemented following fires between 1990 and 2003 in Great Basin (USA) shrublands. We examined sites on loamy soils that burned only once since 1970 to eliminate confounding effects of recurrent fire and to assess soils most conducive to establishment of seeded species. We evaluated whether seeding provided greater cover of perennial seeded species than burned–unseeded and unburned–unseeded sites, while also accounting for environmental variation. 3. Post-fire seeding of native perennial grasses generally did not increase cover relative to burned–unseeded areas. Native perennial grass cover did, however, increase after drill seeding when competitive non-natives were not included in mixes. Seeding non-native perennial grasses and the shrub Bassia prostrata resulted in more vegetative cover in aerial and drill seeding, with non-native perennial grass cover increasing with annual precipitation. Seeding native shrubs, particularly Artemisia tridentata , did not increase shrub cover or density in burned areas. Cover of undesirable, non-native annual grasses was lower in drill seeded relative to unseeded areas, but only at higher elevations. 4. Synthesis and applications. Management objectives are more likely to be met in high-elevation or precipitation locations where establishment of perennial grasses occurred. On lower and drier sites, management objectives are unlikely to be met with seeding alone. Intensive restoration methods such as invasive plant control and/or repeated sowings after establishment failures due to weather may be required in subsequent years. Managers might consider using native-only seed mixtures when establishment of native perennial grasses is the goal. Post-fire rehabilitation provides a land treatment example where long-term monitoring can inform adaptive management decisions to meet future objectives, particularly in arid landscapes where recovery is slow.

Great Basin↗

USGS2014

Quantifying restoration effectiveness using multi-scale habitat models: implications for sage-grouse in the Great Basin

A recurrent challenge in the conservation of wide-ranging, imperiled species is understanding which habitats to protect and whether we are capable of restoring degraded landscapes. For Greater Sage-grouse (Centrocercus urophasianus), a species of conservation concern in the western United States, we approached this problem by developing multi-scale empirical models of occupancy in 211 randomly located plots within a 40 million ha portion of the species' range. We then used these models to predict sage-grouse habitat quality at 826 plots associated with 101 post-wildfire seeding projects implemented from 1990 to 2003. We also compared conditions at restoration sites to published habitat guidelines. Sage-grouse occupancy was positively related to plot- and landscape-level dwarf sagebrush (Artemisia arbuscula, A. nova, A. tripartita) and big sagebrush steppe prevalence, and negatively associated with non-native plants and human development. The predicted probability of sage-grouse occupancy at treated plots was low on average (0.09) and not substantially different from burned areas that had not been treated. Restoration sites with quality habitat tended to occur at higher elevation locations with low annual temperatures, high spring precipitation, and high plant diversity. Of 313 plots seeded after fire, none met all sagebrush guidelines for breeding habitats, but approximately 50% met understory guidelines, particularly for perennial grasses. This pattern was similar for summer habitat. Less than 2% of treated plots met winter habitat guidelines. Restoration actions did not increase the probability of burned areas meeting most guideline criteria. The probability of meeting guidelines was influenced by a latitudinal gradient, climate, and topography. Our results suggest that sage-grouse are relatively unlikely to use many burned areas within 20 years of fire, regardless of treatment. Understory habitat conditions are more likely to be adequate than overstory conditions, but in most climates, establishing forbs and reducing cheatgrass dominance is unlikely. Reestablishing sagebrush cover will require more than 20 years using past restoration methods. Given current fire frequencies and restoration capabilities, protection of landscapes containing a mix of dwarf sagebrush and big sagebrush steppe, minimal human development, and low non-native plant cover may provide the best opportunity for conservation of sage-grouse habitats.

Ecosphere↗

USGS2013

Factors influencing detection of eDNA from a stream-dwelling amphibian

Environmental DNA (eDNA) methods for detecting and estimating abundance of aquatic species are emerging rapidly, but little is known about how processes such as secretion rate, environmental degradation, and time since colonization or extirpation from a given site affect eDNA measurements. Using stream-dwelling salamanders and quantitative PCR (qPCR) analysis, we conducted three experiments to assess eDNA: (i) production rate; (ii) persistence time under different temperature and light conditions; and (iii) detectability and concentration through time following experimental introduction and removal of salamanders into previously unoccupied streams. We found that 44–50 g individuals held in aquaria produced 77 ng eDNA/h for 2 h, after which production either slowed considerably or began to equilibrate with degradation. eDNA in both full-sun and shaded treatments degraded exponentially to <1% of the original concentration after 3 days. eDNA was no longer detectable in full-sun samples after 8 days, whereas eDNA was detected in 20% of shaded samples after 11 days and 100% of refrigerated control samples after 18 days. When translocated into unoccupied streams, salamanders were detectable after 6 h, but only when densities were relatively high (0.2481 individuals/m 2 ) and when samples were collected within 5 m of the animals. Concentrations of eDNA detected were very low and increased steadily from 6–24 h after introduction, reaching 0.0022 ng/L. Within 1 h of removing salamanders from the stream, eDNA was no longer detectable. These results suggest that eDNA detectability and concentration depend on production rates of individuals, environmental conditions, density of animals, and their residence time.

Molecular Ecology Resources↗

USGS2013

Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples

Environmental DNA (eDNA) methods for detecting aquatic species are advancing rapidly, but with little evaluation of field protocols or precision of resulting estimates. We compared sampling results from traditional field methods with eDNA methods for two amphibians in 13 streams in central Idaho, USA. We also evaluated three water collection protocols and the influence of sampling location, time of day, and distance from animals on eDNA concentration in the water. We found no difference in detection or amount of eDNA among water collection protocols. eDNA methods had slightly higher detection rates than traditional field methods, particularly when species occurred at low densities. eDNA concentration was positively related to field-measured density, biomass, and proportion of transects occupied. Precision of eDNA-based abundance estimates increased with the amount of eDNA in the water and the number of replicate subsamples collected. eDNA concentration did not vary significantly with sample location in the stream, time of day, or distance downstream from animals. Our results further advance the implementation of eDNA methods for monitoring aquatic vertebrates in stream habitats.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2013

Performance of quantitative vegetation sampling methods across gradients of cover in Great Basin plant communities

Resource managers and scientists need efficient, reliable methods for quantifying vegetation to conduct basic research, evaluate land management actions, and monitor trends in habitat conditions. We examined three methods for quantifying vegetation in 1-ha plots among different plant communities in the northern Great Basin: photography-based grid-point intercept (GPI), line-point intercept (LPI), and point-quarter (PQ). We also evaluated each method for within-plot subsampling adequacy and effort requirements relative to information gain. We found that, for most functional groups, percent cover measurements collected with the use of LPI, GPI, and PQ methods were strongly correlated. These correlations were even stronger when we used data from the upper canopy only (i.e., top “hit” of pin flags) in LPI to estimate cover. PQ was best at quantifying cover of sparse plants such as shrubs in early successional habitats. As cover of a given functional group decreased within plots, the variance of the cover estimate increased substantially, which required more subsamples per plot (i.e., transect lines, quadrats) to achieve reliable precision. For GPI, we found that that six–nine quadrats per hectare were sufficient to characterize the vegetation in most of the plant communities sampled. All three methods reasonably characterized the vegetation in our plots, and each has advantages depending on characteristics of the vegetation, such as cover or heterogeneity, study goals, precision of measurements required, and efficiency needed.

Idaho;Oregon↗

USGS2012

Persistence and extirpation in invaded landscapes: patch characteristics and connectivity determine effects of non-native predatory fish on native salamanders

Studies have demonstrated negative effects of non-native, predatory fishes on native amphibians, yet it is still unclear why some amphibian populations persist, while others are extirpated, following fish invasion. We examined this question by developing habitat-based occupancy models for the long-toed salamander (Ambystoma macrodactylum) and nonnative fish using survey data from 1,749 water bodies across 470 catchments in the Northern Rocky Mountains, USA. We first modeled the habitat associations of salamanders at 468 fishless water bodies in 154 catchments where non-native fish were historically, and are currently, absent from the entire catchment. Wethen applied this habitat model to the complete data set to predict the probability of salamander occupancy in each water body, removing any effect of fish presence. Finally, we compared field-observed occurrences of salamanders and fish to modeled probability of salamander occupancy. Suitability models indicated that fish and salamanders had similar habitat preferences, possibly resulting in extirpations of salamander populations from entire catchments where suitable habitats were limiting. Salamanders coexisted with non-native fish in some catchments by using marginal quality, isolated (no inlet or outlet) habitats that remained fishless. They rarely coexisted with fish within individual water bodies and only where habitat quality was highest. Connectivity of water bodies via streams resulted in increased probability of fish invasion and consequently reduced probability of salamander occupancy.These results could be used to identify and prioritize catchments and water bodies where control measures would be most effective at restoring amphibian populations. Our approach could be useful as a framework for improved investigations into questions of persistence and extirpation of native species when non-native species have already become established.

Rocky Mountains↗

USGS2012

Pattern and process of prescribed fires influence effectiveness at reducing wildfire severity in dry coniferous forests

We examined the effects of three early season (spring) prescribed fires on burn severity patterns of summer wildfires that occurred 1–3 years post-treatment in a mixed conifer forest in central Idaho. Wildfire and prescribed fire burn severities were estimated as the difference in normalized burn ratio (dNBR) using Landsat imagery. We used GIS derived vegetation, topography, and treatment variables to generate models predicting the wildfire burn severity of 1286–5500 30-m pixels within and around treated areas. We found that wildfire severity was significantly lower in treated areas than in untreated areas and significantly lower than the potential wildfire severity of the treated areas had treatments not been implemented. At the pixel level, wildfire severity was best predicted by an interaction between prescribed fire severity, topographic moisture, heat load, and pre-fire vegetation volume. Prescribed fire severity and vegetation volume were the most influential predictors. Prescribed fire severity, and its influence on wildfire severity, was highest in relatively warm and dry locations, which were able to burn under spring conditions. In contrast, wildfire severity peaked in cooler, more mesic locations that dried later in the summer and supported greater vegetation volume. We found considerable evidence that prescribed fires have landscape-level influences within treatment boundaries; most notable was an interaction between distance from the prescribed fire perimeter and distance from treated patch edges, which explained up to 66% of the variation in wildfire severity. Early season prescribed fires may not directly target the locations most at risk of high severity wildfire, but proximity of these areas to treated patches and the discontinuity of fuels following treatment may influence wildfire severity and explain how even low severity treatments can be effective management tools in fire-prone landscapes.

Idaho↗