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Robert O. Hall

Publications and source records attributed to Robert O. Hall.

15 recordsLinked to original sources

A simplified two-station approach for modeling metabolism in dam tailwaters subject to diel flow variation

Tailwaters are ubiquitous and highly managed ecosystems whose food webs often rely disproportionately on autochthonous energy. In situ continuous dissolved oxygen data are increasingly being used to estimate gross primary productivity and ecosystem respiration in rivers, but this approach is complicated in tailwaters, where upriver discontinuities (i.e., dams) violate commonly employed one-station approaches. In such cases, two-station metabolism models can be applied, although substantial diel variation in flow (a common outcome of hydropower production) requires more complex treatment of water parcel travel times. Here, we present a new two-station metabolism model that allows estimation of reach-scale gross primary productivity and ecosystem respiration in streams and rivers that experience within-day variation in flow. Our approach simplifies two-station variable flow model implementation compared to previous efforts. We apply our model to a 6-yr dissolved oxygen time series and use Bayesian inference to estimate daily gross primary productivity, ecosystem respiration, and gas exchange velocity ( k 600 ) for a ~12-km reach of the Colorado River downriver of Glen Canyon Dam. We compare our model's performance to a more mechanistically detailed and computationally intensive Eulerian dynamic flow model and also to a widely-used one-station model that uses assumptions of reach uniformity that are often strongly violated in tailwaters. These comparisons show that our metabolism estimates conform with output from the more detailed dynamic flow model and that the one-station approach deviates substantially from both two-station approaches. Our new stream metabolism model can help resolve a fundamental analytical impediment in tailwater ecology.

Arizona

Evaluating a process-guided deep learning approach for predicting dissolved oxygen in streams

Dissolved oxygen (DO) is a critical water quality constituent that governs habitat suitability for aquatic biota, biogeochemical reactions and solubility of metals in streams. Recently introduced high-frequency sensors have increased our ability to measure DO, but we still lack the capacity to understand and predict DO concentrations at high spatial resolutions or in unmonitored locations. Machine learning (ML) has been a commonly used approach for modelling DO, however, conventional ML models have no representation of the limnological processes governing DO dynamics. Here we implement and evaluate two process-guided deep learning (PGDL) approaches for predicting daily minimum, mean and maximum DO concentrations in rivers from the Delaware River Basin, USA. In both cases, a multi-task approach was taken in which the PGDL models predicted stream metabolism and gas exchange rates in addition to the DO concentrations themselves. Our results showed that for these sites, the PGDL approaches did not improve upon baseline predictions in temporal and spatially similar holdout experiments. One of the approaches did, however, improve predictions when applied to spatially dissimilar sites. Although this particular PGDL approach did not improve predictive accuracy in most cases, our results suggest that process guidance, perhaps a more constrained approach, could benefit a data-driven DO model.

Hydrological Processes

Macroscale controls determine the recovery of river ecosystem productivity following flood disturbances

River ecosystems rely on varied flows, including regular floods, to provide food and habitat for aquatic organisms. However, flows of freshwater are becoming increasingly managed for irrigation, industry, and other human activities, and the frequency of floods is changing. Our study used time-series data of photosynthesis from 143 rivers across the United States and developed a modeling framework to examine how algae, the base of most riverine food webs, recovered following scouring disturbance during floods. We found that algae in wider rivers recovered more quickly following disturbance (e.g., removal from the bottom) but that the flow thresholds at which algae is disturbed are likely more strongly influenced by site-specific characteristics.

Proceedings of the National Academy of Sciences

The metabolic regimes of 356 rivers in the United States

A national-scale quantification of metabolic energy flow in streams and rivers can improve understanding of the temporal dynamics of in-stream activity, links between energy cycling and ecosystem services, and the effects of human activities on aquatic metabolism. The two dominant terms in aquatic metabolism, gross primary production (GPP) and aerobic respiration (ER), have recently become practical to estimate for many sites due to improved modeling approaches and the availability of requisite model inputs in public datasets. We assembled inputs from the U.S. Geological Survey and National Aeronautics and Space Administration for October 2007 to January 2017. We then ran models to estimate daily GPP, ER, and the gas exchange rate coefficient for 356 streams and rivers across the continental United States. We also gathered potential explanatory variables and spatial information for cross-referencing this dataset with other datasets of watershed characteristics. This dataset offers a first national assessment of many-day time series of metabolic rates for up to 9 years per site, with a total of 490,907 site-days of estimates.

Scientific Data

Shifting stream planform state decreases stream productivity yet increases riparian animal production

In the Colorado Front Range (USA), disturbance history dictates stream planform. Undisturbed, old-growth streams have multiple channels and large amounts of wood and depositional habitat. Disturbed streams (wildfires and logging < 200 years ago) are single-channeled with mostly erosional habitat. We tested how these opposing stream states influenced organic matter, benthic macroinvertebrate secondary production, emerging aquatic insect flux, and riparian spider biomass. Organic matter and macroinvertebrate production did not differ among sites per unit area (m −2 ), but values were 2 ×–21 × higher in undisturbed reaches per unit of stream valley (m −1 valley) because total stream area was higher in undisturbed reaches. Insect emergence was similar among streams at the per unit area and per unit of stream valley. However, rescaling insect emergence to per meter of stream bank showed that the emerging insect biomass reaching the stream bank was lower in undisturbed sites because multi-channel reaches had 3 × more stream bank than single-channel reaches. Riparian spider biomass followed the same pattern as emerging aquatic insects, and we attribute this to bottom-up limitation caused by the multi-channeled undisturbed sites diluting prey quantity (emerging insects) reaching the stream bank (riparian spider habitat). These results show that historic landscape disturbances continue to influence stream and riparian communities in the Colorado Front Range. However, these legacy effects are only weakly influencing habitat-specific function and instead are primarily influencing stream–riparian community productivity by dictating both stream planform (total stream area, total stream bank length) and the proportional distribution of specific habitat types (pools vs riffles).

Oecologia

Carbon dynamics of river corridors and the effects of human alterations

Research in stream metabolism, gas exchange, and sediment dynamics indicates that rivers are an active component of the global carbon cycle and that river form and process can influence partitioning of terrestrially derived carbon among the atmosphere, geosphere, and ocean. Here we develop a conceptual model of carbon dynamics (inputs, outputs, and storage of organic carbon) within a river corridor, which includes the active channel and the riparian zone. The exchange of carbon from the channel to the riparian zone represents potential for storage of transported carbon not included in the “active pipe” model of organic carbon (OC) dynamics in freshwater systems. The active pipe model recognizes that river processes influence carbon dynamics, but focuses on CO 2 emissions from the channel and eventual delivery to the ocean. We also review how human activities directly and indirectly alter carbon dynamics within river corridors. We propose that dams create the most significant alteration of carbon dynamics within a channel, but that alteration of riparian zones, including the reduction of lateral connectivity between the channel and riparian zone, constitutes the most substantial change of carbon dynamics in river corridors. We argue that the morphology and processes of a river corridor regulate the ability to store, transform, and transport OC, and that people are pervasive modifiers of river morphology and processes. The net effect of most human activities, with the notable exception of reservoir construction, appears to be that of reducing the ability of river corridors to store OC within biota and sediment, which effectively converts river corridors to OC sources rather than OC sinks. We conclude by summarizing knowledge gaps in OC dynamics and the implications of our findings for managing OC dynamics within river corridors.

Ecological Monographs

Turbidity, light, temperature, and hydropeaking control primary productivity in the Colorado River, Grand Canyon

Dams and river regulation greatly alter the downstream environment for gross primary production (GPP) because of changes in water clarity, flow, and temperature regimes. We estimated reach-scale GPP in five locations of the regulated Colorado River in Grand Canyon using an open channel model of dissolved oxygen. Benthic GPP dominates in Grand Canyon due to fast transport times and low pelagic algal biomass. In one location, we used a 738 days time series of GPP to identify the relative contribution of different physical controls of GPP. We developed both linear and semimechanistic time series models that account for unmeasured temporal covariance due to factors such as algal biomass dynamics. GPP varied from 0 g O 2 m −2 d −1 to 3.0 g O 2 m −2 d −1 with a relatively low annual average of 0.8 g O 2 m −2 d −1 . Semimechanistic models fit the data better than linear models and demonstrated that variation in turbidity primarily controlled GPP. Lower solar insolation during winter and from cloud cover lowered GPP much further. Hydropeaking lowered GPP but only during turbid conditions. Using the best model and parameter values, the model accurately predicted seasonal estimates of GPP at 3 of 4 upriver sites and outperformed the linear model at all sites; discrepancies were likely from higher algal biomass at upstream sites. This modeling approach can predict how changes in physical controls will affect relative rates of GPP throughout the 385 km segment of the Colorado River in Grand Canyon and can be easily applied to other streams and rivers.

Arizona

High diet overlap between native small-bodied fishes and nonnative fathead minnow in the Colorado River, Grand Canyon, Arizona

River regulation may mediate the interactions among native and nonnative species, potentially favoring nonnative species and contributing to the decline of native populations. We examined food resource use and diet overlap among small-bodied fishes in the Grand Canyon section of the Colorado River as a first step in evaluating potential resource competition. We compared the diets of the predominant small-bodied fishes (native Speckled Dace Rhinichthys osculus , juvenile Flannelmouth Sucker Catostomus latipinnis , and juvenile Bluehead Sucker C. discobolus , and nonnative Fathead Minnow Pimephales promelas ) across seasons at four sites downstream of Glen Canyon Dam using nonmetric multidimensional scaling and Schoener's similarity index. The diets of these fishes included diatoms, amorphous detritus, aquatic invertebrates (especially simuliid and chironomid larvae), terrestrial invertebrates, and terrestrial vegetation. Diets varied with season and were affected by high turbidity. Fish consumed more amorphous detritus and terrestrial vegetation during the summer monsoon season (July–September), when turbidity was higher. The diets of all species overlapped, but there was large variation in the degree of overlap. The diets of juvenile suckers and Fathead Minnows were most similar, while Speckled Dace had relatively distinct diets. The differences took the form of higher proportions of diatoms and amorphous detritus in the diets of Bluehead Suckers and Fathead Minnows and higher proportions of simuliids and chironomids in those of Speckled Dace. If food resources are or become limiting, diet overlap suggests that competition may occur among native and nonnative species, which could have implications for the population dynamics of these fishes and for the management of the Colorado River ecosystem in Grand Canyon.

Arizona

Food-web dynamics in a large river discontinuum

Nearly all ecosystems have been altered by human activities, and most communities are now composed of interacting species that have not co-evolved. These changes may modify species interactions, energy and material flows, and food-web stability. Although structural changes to ecosystems have been widely reported, few studies have linked such changes to dynamic food-web attributes and patterns of energy flow. Moreover, there have been few tests of food-web stability theory in highly disturbed and intensely managed freshwater ecosystems. Such synthetic approaches are needed for predicting the future trajectory of ecosystems, including how they may respond to natural or anthropogenic perturbations. We constructed flow food webs at six locations along a 386-km segment of the Colorado River in Grand Canyon (Arizona, USA) for three years. We characterized food-web structure and production, trophic basis of production, energy efficiencies, and interaction-strength distributions across a spatial gradient of perturbation (i.e., distance from Glen Canyon Dam), as well as before and after an experimental flood. We found strong longitudinal patterns in food-web characteristics that strongly correlated with the spatial position of large tributaries. Above tributaries, food webs were dominated by nonnative New Zealand mudsnails (62% of production) and nonnative rainbow trout (100% of fish production). The simple structure of these food webs led to few dominant energy pathways (diatoms to few invertebrate taxa to rainbow trout), large energy inefficiencies (i.e., <20% of invertebrate production consumed by fishes), and right-skewed interaction-strength distributions, consistent with theoretical instability. Below large tributaries, invertebrate production declined ∼18-fold, while fish production remained similar to upstream sites and comprised predominately native taxa (80–100% of production). Sites below large tributaries had increasingly reticulate and detritus-based food webs with a higher prevalence of omnivory, as well as interaction strength distributions more typical of theoretically stable food webs (i.e., nearly twofold higher proportion of weak interactions). Consistent with theory, downstream food webs were less responsive to the experimental flood than sites closest to the dam. We show how human-induced shifts to food-web structure can affect energy flow and interaction strengths, and we show that these changes have consequences for food-web function and response to perturbations.

Arizona

Macroinvertebrate diets reflect tributary inputs and turbidity-driven changes in food availability in the Colorado River downstream of Glen Canyon Dam

Physical changes to rivers associated with large dams (e.g., water temperature) directly alter macroinvertebrate assemblages. Large dams also may indirectly alter these assemblages by changing the food resources available to support macroinvertebrate production. We examined the diets of the 4 most common macroinvertebrate taxa in the Colorado River through Glen and Grand Canyons, seasonally, at 6 sites for 2.5 y. We compared macroinvertebrate diet composition to the composition of epilithon (rock and cliff faces) communities and suspended organic seston to evaluate the degree to which macroinvertebrate diets tracked downstream changes in resource availability. Diets contained greater proportions of algal resources in the tailwater of Glen Canyon Dam and more terrestrial-based resources at sites downstream of the 1st major tributary. As predicted, macroinvertebrate diets tracked turbidity-driven changes in resource availability, and river turbidity partially explained variability in macroinvertebrate diets. The relative proportions of resources assimilated by macroinvertebrates ranged from dominance by algae to terrestrial-based resources, despite greater assimilation efficiencies for algal than terrestrial C. Terrestrial resources were most important during high turbidity conditions, which occurred during the late-summer monsoon season (July–October) when tributaries contributed large amounts of organic matter to the mainstem and suspended sediments reduced algal production. Macroinvertebrate diets were influenced by seasonal changes in tributary inputs and turbidity, a result suggesting macroinvertebrate diets in regulated rivers may be temporally dynamic and driven by tributary inputs.

Arizona

Native and nonnative fish populations of the Colorado River are food limited--evidence from new food web analyses

Fish populations in the Colorado River downstream from Glen Canyon Dam appear to be limited by the availability of high-quality invertebrate prey. Midge and blackfly production is low and nonnative rainbow trout in Glen Canyon and native fishes in Grand Canyon consume virtually all of the midge and blackfly biomass that is produced annually. In Glen Canyon, the invertebrate assemblage is dominated by nonnative New Zealand mudsnails, the food web has a simple structure, and transfers of energy from the base of the web (algae) to the top of the web (rainbow trout) are inefficient. The food webs in Grand Canyon are more complex relative to Glen Canyon, because, on average, each species in the web is involved in more interactions and feeding connections. Based on theory and on studies from other ecosystems, the structure and organization of Grand Canyon food webs should make them more stable and less susceptible to large changes following perturbations of the flow regime relative to food webs in Glen Canyon. In support of this hypothesis, Grand Canyon food webs were much less affected by a 2008 controlled flood relative to the food web in Glen Canyon.

Colorado River

Air-water oxygen exchange in a large whitewater river

Air–water gas exchange governs fluxes of gas into and out of aquatic ecosystems. Knowing this flux is necessary to calculate gas budgets (i.e., O 2 ) to estimate whole‐ecosystem metabolism and basin‐scale carbon budgets. Empirical data on rates of gas exchange for streams, estuaries, and oceans are readily available. However, there are few data from large rivers and no data from whitewater rapids. We measured gas transfer velocity in the Colorado River, Grand Canyon, as decline in O 2 saturation deficit, 7 times in a 28‐km segment spanning 7 rapids. The O 2 saturation deficit exists because of hypolimnetic discharge from Glen Canyon Dam, located 25 km upriver from Lees Ferry. Gas transfer velocity ( k 600 ) increased with slope of the immediate reach. k 600 was < 10 cm h − 1 in flat reaches, while k 600 for the steepest rapid ranged 3600–7700 cm h − 1 , an extremely high value of k 600 . Using the rate of gas exchange per unit length of water surface elevation ( K drop , m − 1 ), segment‐integrated k 600 varied between 74 and 101 cm h − 1 . Using K drop we scaled k 600 to the remainder of the Colorado River in Grand Canyon. At the scale corresponding to the segment length where 80% of the O 2 exchanged with the atmosphere (mean length = 26.1 km), k 600 varied 4.5‐fold between 56 and 272 cm h − 1 with a mean of 113 cm h − 1 . Gas transfer velocity for the Colorado River was higher than those from other aquatic ecosystems because of large rapids. Our approach of scaling k 600 based on K drop allows comparing gas transfer velocity across rivers with spatially heterogeneous morphology.

Arizona

Ecosystem ecology meets adaptive management: food web response to a controlled flood on the Colorado River, Glen Canyon

Large dams have been constructed on rivers to meet human demands for water, electricity, navigation, and recreation. As a consequence, flow and temperature regimes have been altered, strongly affecting river food webs and ecosystem processes. Experimental high‐flow dam releases, i.e., controlled floods, have been implemented on the Colorado River, USA, in an effort to reestablish pulsed flood events, redistribute sediments, improve conditions for native fishes, and increase understanding of how dam operations affect physical and biological processes. We quantified secondary production and organic matter flows in the food web below Glen Canyon dam for two years prior and one year after an experimental controlled flood in March 2008. Invertebrate biomass and secondary production declined significantly following the flood (total biomass, 55% decline; total production, 56% decline), with most of the decline driven by reductions in two nonnative invertebrate taxa, Potamopyrgus antipodarum and Gammarus lacustris . Diatoms dominated the trophic basis of invertebrate production before and after the controlled flood, and the largest organic matter flows were from diatoms to the three most productive invertebrate taxa ( P. antipodarum , G. lacustris , and Tubificida). In contrast to invertebrates, production of rainbow trout ( Oncorhynchus mykiss ) increased substantially (194%) following the flood, despite the large decline in total secondary production of the invertebrate assemblage. This counterintuitive result is reconciled by a post‐flood increase in production and drift concentrations of select invertebrate prey (i.e., Chironomidae and Simuliidae) that supported a large proportion of trout production but had relatively low secondary production. In addition, interaction strengths, measured as species impact values, were strongest between rainbow trout and these two taxa before and after the flood, demonstrating that the dominant consumer–resource interactions were not necessarily congruent with the dominant organic matter flows. Our study illustrates the value of detailed food web analysis for elucidating pathways by which dam management may alter production and strengths of species interactions in river food webs. We suggest that controlled floods may increase production of nonnative rainbow trout, and this information can be used to help guide future dam management decisions.

Arizona

Short-Term Effects of the 2008 High-Flow Experiment on Macroinvertebrates in Colorado River Below Glen Canyon Dam, Arizona

Glen Canyon Dam has dramatically altered the physical environment (especially discharge regime, water temperatures, and sediment inputs) of the Colorado River. High-flow experiments (HFE) that mimic one aspect of the natural hydrograph (floods) were implemented in 1996, 2004, and 2008. The primary goal of these experiments was to increase the size and total area of sandbar habitats that provide both camping sites for recreational users and create backwaters (areas of stagnant flow in the lee of return-current eddies) that may be important as rearing habitat for native fish. Experimental flows might also positively or negatively alter the rainbow trout (Oncorhynchus mykiss) sport fishery in the clear tailwater reach below Glen Canyon Dam, Ariz., and native fish populations in downstream reaches (for example, endangered humpback chub, Gila cypha) through changes in available food resources. We examined the short-term response of benthic macroinvertebrates to the March 2008 HFE at three sites [river mile 0 (RM 0, 15.7 miles downriver from the dam), RM 62, and RM 225] along the Colorado River downstream from Glen Canyon Dam by sampling immediately before and then 1, 7, 14, and 30 days after the HFE. We selected these sites because of their importance to management; RM 0 has a valuable trout fishery, and RM 62 is the location of the largest population of the endangered humpback chub in the Grand Canyon. In addition to the short-term collection of samples, as part of parallel investigations, we collected 3 years of monthly (quarterly for RM 62) benthic macroinvertebrate samples that included 15 months of post-HFE data for all three sites, but processing of the samples is only complete for one site (RM 0). At RM 0, the HFE caused an immediate 1.75 g AFDM/m2 (expressed as grams ash-free dry mass, or AFDM) reduction of macroinvertebrate biomass that was driven by significant reductions in the biomass of the two dominant taxa in this reach-Potamopyrgus antipodarum (New Zealand mud snails) and Gammarus lacustris (scuds or side-swimmers)-and also biomass reductions of other common taxa (worms in the families Lumbricidae and Tubificidae). Invertebrate drift estimates during the HFE suggest that reductions in biomass of some taxa were because of export from the reach. Reductions in biomass of P. antipodarum and G. lacustris persisted at least 15 months after the HFE, when this study concluded, and coincided with a significant decline in the annual production of these taxa: P. antipodarum production of 11 to 13 g AFDM/m2/yr in two pre-HFE years versus 2 g AFDM/m2/yr in the post-HFE year, and G. lacustris production of 7 to 8 g AFDM/m2/yr in two pre-HFE years versus 3 g AFDM/m2/yr in the post-HFE year. There were not changes in invertebrate feeding habits in response to the HFE, as our 3-year dataset of invertebrate diets indicated no substantial changes. Our long-term analysis of the composition of the drift indicates that because of a reduction in P. antipodarum in the drift relative to digestible taxa, the quality of the drift as a food resource for fishes increased. At downstream sites, total assemblage biomass did not decline, likely because assemblages were dominated by blackflies (Simulium arcticum), which were not affected by the HFE. Similar to RM 0, G. lacustris and Tubificidae had significantly lower biomass after the HFE at RM 62 and RM 225. Chironomids were also significantly lower following the flood at both downstream sites. Our findings demonstrate that the effects of a HFE on invertebrates may persist up to at least 15 months in the clear tailwater below the dam, whereas in downstream reaches impacts were more short lived. If controlling the abundance of P. antipodarum is a goal of managers, our findings indicate that periodic HFEs on the order of every 2 to 3 years may be an effective strategy for meeting that goal. More frequent HFEs may cause a shift in the state of the benthic invertebrate assemblage of the tailwa

Open-File Report

Basal Resources in Backwaters of the Colorado River Below Glen Canyon Dam-Effects of Discharge Regimes and Comparison with Mainstem Depositional Environments

Eight species of fish were native to the Colorado River before the closure of Glen Canyon Dam, but only four of these native species are currently present. A variety of factors are responsible for the loss of native fish species and the limited distribution and abundance of those that remain. These factors include cold and constant water temperatures, predation and competition with nonnative fish species, and food limitation. Backwaters are areas of stagnant flow in a return-current channel and are thought to be critical rearing habitat for juvenile native fish. Backwaters can be warmer than the main channel and may support higher rates of food production. Glen Canyon Dam is a peaking hydropower facility and, as a result, has subdaily variation in discharge because of changes in demand for power. Stable daily discharges may improve the quality of nearshore rearing habitats such as backwaters by increasing warming, stabilizing the substrate, and increasing food production. To evaluate whether backwaters have greater available food resources than main-channel habitats, and how resource availability in backwaters is affected by stable flow regimes, we quantified water-column and benthic food resources in backwaters seasonally for 1 year using both standing (organic matter concentration/density; chlorophyll a concentration/density; zooplankton concentration; benthic invertebrate density and biomass) and process measurements (chamber estimates of ecosystem metabolism). We compared backwater resource measurements with comparable data from main-channel habitats, and compared backwater data collected during stable discharge with data collected when there was subdaily variation in discharge. Rates of primary production in backwaters (mean gross primary production of 1.7 g O2/m2/d) and the main channel (mean gross primary production of 2.0 g O2/m2/d) were similar. Benthic organic matter standing stock (presented as ash-free dry mass-AFDM) was seven times higher in backwaters relative to main-channel habitats (median value of 210 g AFDM/m2 versus 27 g AFDM/m2); this likely reflects greater retention of tributary-derived organic matter in backwaters relative to main-channel habitats. Water-column and benthic organic matter were higher during periods of steady discharge relative to periods of fluctuating discharge. However, our steady-discharge data collection was confounded by tributary activity. Flooding tributaries contribute substantial quantities of sediment and organic matter to the Colorado River; there were two large tributary floods during our steady-discharge data collection but none during our fluctuating-discharge data collections. Although only preliminary data on invertebrate biomass are available at this time, invertebrate biomass in backwaters (range 2-27 mg AFDM/m2) appears low relative to previously published data from main-channel habitats (~100 mg AFDM/m2). The rate of water turnover in backwaters may be a master variable that affects both physical (for example, warming) and biological (for example, primary production) processes in backwaters. We used dye tracer studies to estimate turnover rates in backwaters across flow regimes. Turnover took considerably longer when discharge was stable compared to when there was subdaily variation in discharge (613 minutes versus 220 minutes). Our results indicate that backwaters may represent a sink for organic matter that enters from the main channel and that stable discharge, by lengthening water turnover times, will likely increase organic matter retention.

Open-File Report