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Geology topics

Robert N. Fisher

Publications and source records attributed to Robert N. Fisher.

At least 127 records · Page 7Linked to original sources
USGS2018

Multi-scale effects of land cover and urbanization on the habitat suitability of an endangered toad

Habitat degradation, entwined with land cover change, is a major driver of biodiversity loss. Effects of land cover change on species can be direct (when habitat is converted to alternative land cover types) or indirect (when land outside of the species habitat is altered). Hydrologic and ecological connections between terrestrial and aquatic systems are well understood, exemplifying how spatially disparate land cover conditions may influence aquatic habitats, but are rarely examined. We sought to quantify relative effects of land cover at two different but interacting scales on habitat suitability for the endangered arroyo toad ( Anaxyrus californicus ). Based on an existing distribution model for the arroyo toad and available land cover data, we estimated effects of land cover along streams and within entire watersheds on habitat suitability using structural equation modeling. Relationships between land cover and habitat suitability differed between scales, and broader, watershed-scale conditions influenced land cover along the embedded stream networks. We found anthropogenic development and forest cover at the watershed-scale negatively impacted habitat suitability, but development along stream networks was positively associated with suitability. The positive association between development along streams and habitat suitability may be attributable to increased spatial heterogeneity along urbanized streams, or related factors including policies designed to conserve riparian habitats amidst development. These findings show arroyo toad habitat is influenced by land cover across multiple scales, and can inform conservation of the species. Furthermore, our methodology can help elucidate similar dynamics with other taxa, particularly those reliant on both terrestrial and aquatic environments.

California↗
USGS2018

Effects of urbanization, and habitat composition on site occupancy of two snake species using regional monitoring data from southern California

Detection data from a regional, reptile-monitoring program conducted by the U.S. Geological Survey were analyzed to understand the effects of urbanization and habitat composition on site occupancy of the coachwhip ( Masticophis flagellum ) and striped racer ( M. lateralis ) in coastal southern California. Likelihood-based occupancy models indicated striped racers responded to habitat composition, favoring scrub-dominated sites. Coachwhips also responded to habitat composition, favoring open habitats. However, unlike racers, coachwhip spatial population dynamics were strongly associated with the fragmentation and isolation of natural areas caused by urbanization. The odds of coachwhips occupying a site were 64 times greater in large connected areas than the most urbanized and fragmented sites. For coachwhips within urbanized and fragmented sites, the odds of extinction were 10 times greater and odds of colonization were five times lower than in large connected sites. Observed differences between both species in habitat use and specificity are supported by telemetry studies and corroborate existing knowledge of historical patterns of occurrence within the region. Movement data on the coachwhip and striped racer indicate the coachwhip is a wider-ranging species with a greater propensity to encounter roads and other edge environments. Collectively, the results suggest there is widespread loss of the coachwhip from the region, and that long-term persistence of remaining populations is dependent on metapopulation dynamics. The substantially different response of the two species to land-use change serves as a caution against the casual use of closely related species as surrogates in the development of species-specific conservation plans.

California↗
USGS2018

Identifying management-relevant research priorities for responding to disease-associated amphibian declines

A research priority can be defined as a knowledge gap that, if resolved, identifies the optimal course of conservation action. We (a group of geographically distributed and multidisciplinary research scientists) used tools from nominal group theory and decision analysis to collaboratively identify and prioritize information needs within the context of disease-associated amphibian decline , in order to develop a strategy that would support US management agency needs. We developed iterated influence diagrams to create and assess a unified research strategy. We illustrated a transparent process for identifying specific knowledge gaps in amphibian disease ecology relevant to environmental management, and then constructed a research plan to address these uncertainties. The resulting priorities include a need to: (1) understand the drivers of the community-disease relationship, (2) determine the mechanisms by which exposure to contaminants influence disease outcomes, (3) identify elements of terrestrial and aquatic habitats that stabilize host-pathogen dynamics, (4) discuss how metapopulations may be managed to reduce the speed and intensity of disease outbreaks, and (5) define the relationship between habitat management and the environmental and host microbiomes. Along with identifying research priorities for disease management, we present the details of the process used to develop a consensus plan for addressing disease-related declines in amphibians on federally managed lands of the United States.

Global Ecology and Conservation↗
USGS2018

All is not lost: Herpetofaunal “extinctions” in the Fiji Islands

Invasive mammals are implicated in the decline or extinction of numerous insular vertebrate species worldwide, yet rediscoveries of supposedly extinct vertebrates occur regularly. In particular, recent records of secretive amphibian and reptile taxa in the Fiji Islands show that earlier claimed extirpations of Fijian wildlife were erroneous. We add to this growing body of evidence by documenting the Fiji barred treeskink Emoia trossula (Squamata: Scincidae) from Vanua Levu island, Fiji, where it was widely considered extirpated. Regional literature, coupled with this new record, emphasizes the conservation importance of remote forest blocks in Fiji as refugia against nonnative predatory mammals. Moreover, a clear need exists for additional survey work in Fiji to document the contemporary distribution of endemic and endangered herpetofaunal species across the archipelago.

Pacific Science↗
USGS2018

Occurrence of Batrachochytrium dendrobatidis in anurans of the Mediterranean region of Baja California, México

Chytridiomycosis is caused by the fungal pathogen Batrachochytrium dendrobatidis ( Bd ) and is regarded as one of the most significant threats to global amphibian populations. In México, Bd was first reported in 2003 and has now been documented in 13 states. We visited 33 localities and swabbed 199 wild-caught anurans from 7 species (5 native, 2 exotic) across the Mediterranean region of the state of Baja California. Using quantitative PCR, Bd was detected in 94 individuals (47.2% of samples) at 25 of the 33 survey localities for 5 native and 1 exotic frog species. The exotic Xenopus laevis was the only species that tested completely negative for Bd . We found that remoteness, distance to agricultural land, and elevation were the best predictors of Bd presence. These are the first Bd -positive results for the state of Baja California and its presence should be regarded as an additional conservation threat to the region’s native frog species.

Baja California↗
USGS2018

The Introduced Argentine ant (Linepithema humile) on the California Channel Islands: Distribution and Patterns of Spread

The Argentine ant (Linepithema humile) is a widespread and abundant introduced species that disrupts ecosystems throughout its introduced range. This invader was inadvertently introduced to Santa Catalina, San Clemente, Santa Cruz, and San Nicolas Islands at various points during the past century but currently appears to be absent from the remaining Channel Islands. Multiple spatially disjunct infestations on each invaded island individually range in size from <500 m2 to >427 ha and encompass a variety of habitats, including large areas that are entirely dominated by native perennial vegetation. The existence of multiple infestations on individual islands suggests that inadvertent introduction by humans serves as an important within-island dispersal mechanism. Multiyear surveys of individual infestations on San Clemente Island and Santa Cruz Island reveal approximately radial patterns of expansion (as a result of colony budding) away from the edge of each infestation. Rates of spread by budding on San Clemente Island range from 10 m/year to 57 m/year and are comparable to those on mainland California. Given the documented effects of Argentine ant invasions on Santa Cruz Island, the continued spread of the Argentine ant on the Channel Islands represents a serious environmental concern. Eradication programs underway on San Clemente and Santa Cruz Islands will hopefully result in island-wide elimination of this detrimental invader. Native to southern South America (Wild 2004), the Argentine ant (Linepithema humile) has become an abundant and disruptive invader in many parts of its introduced range (Holway et al. 2002a). The Argentine ant was first found in California as early as 1905 (Smith 1936) and now widely occurs there, especially along the coast and in the Central Valley (Ward 1987, Holway 1995, Suarez et al. 1998). Areas invaded by L. humile in Califor- nia support few native ant species (Tremper 1976, Ward 1987, Human and Gordon 1996, Holway 1998a, 1998b, 2005, Suarez et al. 1998, Mitrovich et al. 2010, Hanna et al. 2015b). Additional impacts of this invasion include reduced prey availability for vertebrate insectivores, such as horned lizards (Suarez and Case 2002) and shrews (Laakkonen et al. 2001), and the disruption of seed dispersal (Bond and Slingsby 1984) and pollination mutualisms (Hanna et al. 2015b).

California↗
USGS2017

Loss of dendritic connectivity in southern California's urban riverscape facilitates decline of an endemic freshwater fish

Life history adaptations and spatial configuration of metapopulation networks allow certain species to persist in extreme fluctuating environments, yet long-term stability within these systems relies on the maintenance of linkage habitat. Degradation of such linkages in urban riverscapes can disrupt this dynamic in aquatic species, leading to increased extinction debt in local populations experiencing environment-related demographic flux. We used microsatellites and mtDNA to examine the effects of collapsed network structure in the endemic Santa Ana sucker Catostomus santaanae of southern California, a threatened species affected by natural flood-drought cycles, ‘boom-and-bust’ demography, hybridization, and presumed artificial transplantation. Our results show a predominance of drift-mediated processes in shaping population structure, and that reverse mechanisms for counterbalancing the genetic effects of these phenomena have dissipated with the collapse of dendritic connectivity. We use approximate Bayesian models to support two cases of artificial transplantation, and provide evidence that one of the invaded systems better represents the historic processes that maintained genetic variation within watersheds than any remaining drainages where C. santaanae is considered native. We further show that a stable dry gap in the northern range is preventing genetic dilution of pure C. santaanae persisting upstream of a hybrid assemblage involving a non-native sucker, and that local accumulation of genetic variation in the same drainage is influenced by position within the network. This work has important implications for declining species that have historically relied on dendritic metapopulation networks to maintain source-sink dynamics in phasic environments, but no longer possess this capacity in urban-converted landscapes.

California↗
USGS2017

Heterogeneous responses of temperate-zone amphibian populations to climate change complicates conservation planning

The pervasive and unabated nature of global amphibian declines suggests common demographic responses to a given driver, and quantification of major drivers and responses could inform broad-scale conservation actions. We explored the influence of climate on demographic parameters (i.e., changes in the probabilities of survival and recruitment) using 31 datasets from temperate zone amphibian populations (North America and Europe) with more than a decade of observations each. There was evidence for an influence of climate on population demographic rates, but the direction and magnitude of responses to climate drivers was highly variable among taxa and among populations within taxa. These results reveal that climate drivers interact with variation in life-history traits and population-specific attributes resulting in a diversity of responses. This heterogeneity complicates the identification of conservation ‘rules of thumb’ for these taxa, and supports the notion of local focus as the most effective approach to overcome global-scale conservation challenges.

Scientific Reports↗
USGS2017

An extirpated lineage of a threatened frog species resurfaces in southern California

Southern California has experienced widespread amphibian declines since the 1960s. One species, the Vulnerable California red-legged frog Rana draytonii , is now considered to be extirpated from most of southern California. In February 2017 a population of R. draytonii was discovered in the southern foothills of the San Bernardino Mountains of Riverside County, California, near the edge of the species’ historical distribution. This population belongs to an mtDNA lineage that was presumed to be extirpated within the USA but is still extant in Baja California, Mexico. This discovery increases the potential for future, evolutionarily informed translocations within the southern portion of this species’ range in California.

Oryx↗
USGS2017

At the end of the line: independent overwater colonizations of the Solomon Islands by a hyperdiverse trans-Wallacean lizard lineage (Cyrtodactylus: Gekkota: Squamata)

The islands of East Melanesia have generated key insights into speciation processes and community assembly. However, when and how these islands began to form, emerge and accumulate endemic taxa remains poorly understood. Here, we show that two divergent lineages within the world’s most diverse genus of geckos ( Cyrtodactylus ) occur in the Solomon Islands. One large-bodied species is nested within a radiation from far eastern New Guinea, with inferred colonization, spread and diversification since the late Miocene. In contrast, a newly sampled and relatively small species with a restricted distribution on Guadalcanal Island is a relict that diverged from extant congeners around the early to mid-Miocene. Similar Miocene divergences from extralimital relatives have been inferred for other endemic bird, bat and lizard lineages in East Melanesia. In contrast, across all lineages (including divergent relictual lineages), there is little evidence for endemic in situ diversification within East Melanesia predating the Pliocene (especially in the Solomon Islands). While some East Melanesian endemic lineages may have origins on progenitor islands during the Miocene or even earlier, current evidence suggests the in situ diversification and assembly of extant biological communities commenced around the end of the Miocene.

Zoological Journal of the Linnean Society↗
USGS2017

A new species of iguana Brachylophus Cuvier 1829 (Sauria: Iguania: Iguanidae) from Gau Island, Fiji Islands

The south Pacific iguanas ( Brachylophus ) currently have three recognized living species in Fiji. Recent surveys have uncovered more specific variation (morphological and genetic) within the genus and have better defined the geographic ranges of the named species. One of these recent discoveries is a strikingly different iguana from all other island populations in Fiji which is restricted to Gau Island of the Lomaiviti Province. Gau is the fifth largest island in Fiji and maintains excellent upland forests in the higher elevations. We describe this population from Gau Island as a new species, Brachylophus gau sp. nov., in recognition of its type locality.

Gau Island↗
USGS2017

Biotelemetery data for golden eagles ( Aquila chrysaetos ) captured in coastal southern California, February 2016–February 2017

Because of a lack of clarity about the status of golden eagles ( Aquila chrysaetos ) in coastal southern California, the USGS, in collaboration with local, State, and other Federal agencies, began a multi-year survey and tracking program of golden eagles to address questions regarding habitat use, movement behavior, nest occupancy, genetic population structure, and human impacts on eagles. Golden eagle trapping and tracking efforts began in September 2014. During trapping efforts from September 29, 2014, to February 23, 2016, 27 golden eagles were captured. During trapping efforts from February 24, 2016, to February 23, 2017, an additional 10 golden eagles (7 females and 3 males) were captured in San Diego, Orange, and western Riverside Counties. Biotelemetry data for 26 of the 37 golden eagles that were transmitting data from February 24, 2016, to February 23, 2017 are presented. These eagles ranged as far north as northern Nevada and southern Wyoming, and as far south as La Paz, Baja California, Mexico.

California↗
USGS2017

Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert

Genomic responses to habitat conversion can be rapid, providing wildlife managers with time-limited opportunities to enact recovery efforts that use population connectivity information that reflects predisturbance landscapes. Despite near-complete biome conversion, such opportunities may still exist for the endemic fauna and flora of California's San Joaquin Desert, but comprehensive genetic data sets are lacking for nearly all species in the region. To fill this knowledge gap, we studied the rangewide population structure of the endangered blunt-nosed leopard lizard Gambelia sila , a San Joaquin Desert endemic, using restriction site-associated DNA (RAD), microsatellite and mtDNA data to test whether admixture patterns and estimates of effective migration surfaces (EEMS) can identify land areas with high population connectivity prior to the conversion of native xeric habitats. Clustering and phylogenetic analyses indicate a recent shared history between numerous isolated populations and EEMS reveals latent signals of corridors and barriers to gene flow over areas now replaced by agriculture and urbanization. Conflicting histories between the mtDNA and nuclear genomes are consistent with hybridization with the sister species G. wislizenii , raising important questions about where legal protection should end at the southern range limit of G. sila . Comparative analysis of different data sets also adds to a growing list of advantages in using RAD loci for genetic studies of rare species. We demonstrate how the results of this work can serve as an evolutionary guidance tool for managing endemic, arid-adapted taxa in one of the world's most compromised landscapes.

California↗
USGS2017

A global database of ant species abundances

What forces structure ecological assemblages? A key limitation to general insights about assemblage structure is the availability of data that are collected at a small spatial grain (local assemblages) and a large spatial extent (global coverage). Here, we present published and unpublished data from 51,388 ant abundance and occurrence records of more than 2693 species and 7953 morphospecies from local assemblages collected at 4212 locations around the world. Ants were selected because they are diverse and abundant globally, comprise a large fraction of animal biomass in most terrestrial communities, and are key contributors to a range of ecosystem functions. Data were collected between 1949 and 2014, and include, for each geo-referenced sampling site, both the identity of the ants collected and details of sampling design, habitat type and degree of disturbance. The aim of compiling this dataset was to provide comprehensive species abundance data in order to test relationships between assemblage structure and environmental and biogeographic factors. Data were collected using a variety of standardised methods, such as pitfall and Winkler traps, and will be valuable for studies investigating large-scale forces structuring local assemblages. Understanding such relationships is particularly critical under current rates of global change. We encourage authors holding additional data on systematically collected ant assemblages, especially those in dry and cold, and remote areas, to contact us and contribute their data to this growing dataset.

Ecology↗
USGS2017

A discrete stage-structured model of California newt population dynamics during a period of drought

We introduce a mathematical model for studying the population dynamics under drought of the California newt ( Taricha torosa ), a species of special concern in the state of California. Since 2012, California has experienced a record-setting drought, and multiple studies predict drought conditions currently underway will persist and even increase in severity. Recent declines and local extinctions of California newt populations in Santa Monica Mountain streams motivate our study of the impact of drought on newt population sizes. Although newts are terrestrial salamanders, they migrate to streams each spring to breed and lay eggs. Since egg and larval stages occur in water, a precipitation deficit due to drought conditions reduces the space for newt egg-laying and the necessary habitat for larval development. To mathematically forecast newt population dynamics, we develop a nonlinear system of discrete equations that includes demographic parameters such as survival rates for newt life stages and egg production, which depend on habitat availability and rainfall. We estimate these demographic parameters using 15 years of stream survey data collected from Cold Creek in Los Angeles County, California, and our model captures the observed decline of the parameterized Cold Creek newt population. Based upon data analysis, we predict how the number of available newt egg-laying sites varies with annual precipitation. Our model allows us to make predictions about how the length and severity of drought can affect the likelihood of persistence and the time to critical endangerment of a local newt population. We predict that sustained severe drought will critically endanger the newt population but that the newt population can rebound if a drought is sufficiently short.

Journal of Theoretical Biology↗
USGS2017

Stable isotope analysis as an early monitoring tool for community-scale effects of rat eradication

Invasive rats have colonized most of the islands of the world, resulting in strong negative impacts on native biodiversity and on ecosystem functions. As prolific omnivores, invasive rats can cause local extirpation of a wide range of native species, with cascading consequences that can reshape communities and ecosystems. Eradication of rats on islands is now becoming a widespread approach to restore ecosystems, and many native island species show strong numerical responses to rat eradication. However, the effect of rat eradication on other consumers can extend beyond direct numerical effects, to changes in behavior, dietary composition, and other ecological parameters. These behavioral and trophic effects may have strong cascading impacts on the ecology of restored ecosystems, but they have rarely been examined. In this study, we explore how rat eradication has affected the trophic ecology of native land crab communities. Using stable isotope analysis of rats and crabs, we demonstrate that the diet or trophic position of most crabs changed subsequent to rat eradication. Combined with the numerical recovery of two carnivorous land crab species ( Geograpsus spp.), this led to a dramatic widening of the crab trophic niche following rat eradication. Given the established importance of land crabs in structuring island communities, particularly plants, this suggests an unappreciated mechanism by which rat eradication may alter island ecology. This study also demonstrates the potential for stable isotope analysis as a complementary monitoring tool to traditional techniques, with the potential to provide more nuanced assessments of the community- and ecosystem-wide effects of restoration.

Palmyra Atoll National Wildlife Refuge↗
USGS2017

Four new species of Eimeria (Apicomplexa: Eimeriidae) from Emoia spp. Skinks (Sauria: Scincidae), from Papua New Guinea and the Insular Pacific

Between September and November 1991, 54 adult skinks from 15 species were collected by hand or blowpipe from several localities on Rarotonga, Cook Islands, Ovalau Island, Fiji, and Papua New Guinea (PNG), and their feces were examined for coccidians. Species included 5 seaside skinks ( Emoia atrocostata ), 1 Pacific blue-tailed skink ( Emoia caeroleocauda ), 2 Fiji slender treeskinks ( Emoia concolor ), 15 white-bellied copper-striped skinks ( Emoia cyanura ), 1 Bulolo River forest skink ( Emoia guttata ), 6 dark-bellied copper-striped skinks ( Emoia impar ), 5 Papua five-striped skinks ( Emoia jakati ), 2 Papua slender treeskinks ( Emoia kordoana ), 3 Papua robust treeskinks ( Emoia longicauda ), 1 brown-backed forest skink ( Emoia loveridgei ), 3 Papua black-sided skinks ( Emoia pallidiceps ), 2 Papua white-spotted skinks ( Emoia physicae ), 2 Papua yellow-head skinks ( Emoia popei ), 1 Papua brown forest skink ( Emoia submetallica ), and 5 Fiji barred treeskinks ( Emoia trossula ) Species of Eimeria ( Ei .) were detected from these Emoia ( Em .) spp. and are described here as new. Oocysts of Eimeria iovai n. sp. from Em. pallidiceps from PNG were ellipsoidal with a bilayered wall (L × W) 26.5 × 18.1 μm, with a length/width ratio (L/W) of 1.1. Both micropyle and oocyst residuum were absent, but a fragmented polar granule was present. This eimerian also was found in Em. atrocostata from PNG. Oocysts of Eimeria kirkpatricki n. sp. from Em. atrocostata from PNG were ellipsoidal with a bilayered wall, 18.6 × 13.5 μm, L/W 1.4. A micropyle and oocyst residuum were absent, but a fragmented polar granule was present. This eimerian was also shared by Em. cyanura from the Cook Islands and Fiji, Em. impar from the Cook Islands, Em. loveridgei from PNG, Em. pallidiceps from PNG, Em. popei from PNG, and Em. submetallica from PNG. Oocysts of Eimeria stevejayuptoni n. sp. from Em. longicauda were subspheroidal to ellipsoidal with a bilayered wall, 18.7 × 16.6 μm, L/W 1.1. A micropyle and oocyst residuum were absent, but a fragmented polar granule was present. Oocysts of Eimeria emoia n. sp. from Em. longicauda from PNG were cylindroidal with a bilayered wall, 29.2 × 15.7 μm, L/W 1.9. A micropyle and oocyst residuum were absent, but a polar granule was present. These are the first eimerians reported from Emoia spp. and they add to our growing knowledge of the coccidian fauna of scincid lizards of the South Pacific.

Insular Pacific↗