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Robert C. Klinger

Publications and source records attributed to Robert C. Klinger.

17 recordsLinked to original sources

Genetic and environmental factors associated with survival of a rare songbird in a fragmented urban landscape

The coastal Cactus Wren ( Campylorhynchus brunneicapillus ) persists in small and fragmented populations throughout southern California that are subject to genetic drift and inbreeding. We combined individual banding and resighting data and genotyped individuals at 22 microsatellite loci to assess whether heterozygosity was associated with survival across three regional Cactus Wren populations on conserved lands in Orange and San Diego Counties between 2009 and 2020. Using Cormack-Jolly-Seber models (CJS) to analyze the 5-year capture histories of 528 individual wrens, we found that age class (hatch year or after hatch year) was the strongest predictor of survival. Individual heterozygosity and precipitation also had positive effects on survival, with survival up to 2 times higher in the most heterozygous individuals compared to the least and up to 1.5 times higher in high precipitation years versus drought years. Multi-locus heterozygosity was significantly correlated across loci, suggesting that inbreeding depression is likely driving the association between survival and heterozygosity. Study results support that genetic rescue efforts that reduce inbreeding have the potential to improve fitness and mitigate further loss of genetic variation in managed populations.

California

Homogenization of soil seed bank communities by fire and invasive species in the Mojave Desert

Soil seed banks help maintain species diversity through temporal storage effects and function as germination pools that can optimize fitness across varying environmental conditions. These characteristics promote the persistence of native plant communities, yet disturbances such as fire and associated invasions by non-native species can disrupt these reserves, fundamentally altering successional trajectories. This may be particularly true in deserts, where native plant communities are less adapted to fire. While studies of fire effects on desert plant communities are not uncommon, information regarding the short- and long-term effects of fire on seed banks is less available. To better understand the influence of fire and invasive species on desert seed banks, we investigated soil seed bank biodiversity from 30 wildfires that burned between 1972 and 2010 across the Mojave Desert ecoregion of North America. We assessed how characteristics of fire regimes (frequency, time since fire, and burn severity) interacted with climate and invasive plants on measures of α-, β-, and γ-diversities. Because β-diversity is a direct measure of community variability and reveals important information about biodiversity loss, we further examined the nestedness and turnover components of β-diversity. Mean α- and γ-diversities were generally higher for burned locations than in unburned reference sites, however individual fire variables had little influence on patterns of seed bank diversity. Burned area seed banks tended to be dominated by non-native invasive species, primarily two grasses, ( Bromus rubens , Bromus tectorum ), as well as an invasive forb ( Erodium cicutarium ). The most striking pattern we observed was a collective sharp decline in α-, β-, and γ-diversities with increased invasive species dominance, indicating the homogenization of seed bank communities with the colonization of invasive species after fire. Evidence of homogenization was further supported by reduced turnover and increased nestedness in burn areas compared to reference areas indicating potential biodiversity loss. Our findings highlight how biological processes such as plant invasions can combine with disturbance from fire to alter patterns of seed bank composition and diversity in desert ecosystems.

Frontiers in Ecology and Evolution

The noise is the signal: Spatio-temporal variability of production and productivity in high elevation meadows in the Sierra Nevada mountain range of North America

There are expectations that increasing temperatures will lead to significant changes in structure and function of montane meadows, including greater water stress on vegetation and lowered vegetation production and productivity. We evaluated spatio-temporal dynamics in production and productivity in meadows within the Sierra Nevada mountain range of North America by: (1) compiling Landsat satellite data for the Normalized Difference Vegetation Index (NDVI) across a 37-year period (1985–2021) for 8,095 meadows >2,500 m elevation; then, (2) used state-space models, changepoint analysis, geographically-weighted regression (GWR), and distance-decay analysis (DDA) to: (a) identify meadows with decreasing, increasing or no trends for NDVI; (b) detect meadows with abrupt changes (changepoints) in NDVI; and (c) evaluate variation along gradients of latitude, longitude, and elevation for eight indices of temporal dynamics in annual production (mean growing season NDVI; MGS) and productivity (rate of spring greenup; RSP). Meadows with no long-term change or evidence of increasing NDVI were 2.6x more frequent as those with decreasing NDVI (72% vs. 28%). Abrupt changes in NDVI were detected in 48% of the meadows; they occurred in every year of the study and with no indication that their frequency had changed over time. The intermixing of meadows with different temporal dynamics was a consistent pattern for monthly NDVI and, especially, the eight annual indices of MGS and RSP. The DDA showed temporal dynamics in pairs of meadow within a few 100 m of each other were often as different as those hundreds of kilometers apart. Our findings point strongly toward a great diversity of temporal dynamics in meadow production and productivity in the SNV. The heterogeneity in spatial patterns indicated that production and productivity of meadow vegetation is being driven by interplay among climatic, physiographic and biotic factors at basin and meadow scales. Thus, when evaluating spatio-temporal dynamics in condition for many high elevation meadow systems, what might often be considered “noise” may provide greater insight than a “signal” embedded within a large amount of variability.

California

A decade-long study of repeated prescription burning in California native grassland restoration

Native bunchgrass communities dominated by Stipa pulchra are widely distributed in California but share dominance with non-native annual grasses. Restoration of these grasslands focuses on altering the balance of native to non-native grasses to favor the former. This study investigated the impact of burning on vegetation recovery. In the first postfire year burning showed a 70% reduction in cover of non-native annual grasses ( Bromus diandrus exhibited the greatest reduction) and minimal impact on S. pulchra recovery. In the following 3 years, S. pulchra recovered to levels comparable to controls, whereas the annual grasses remained below control levels until the fifth year. Also, in response to reduced annual grass cover on burned sites several species of non-native Erodium increased from 10 to 30% relative cover, however, the low growth form of these forbs presented a less competitive threat to bunchgrasses than the non-native annual grasses, and by the third postfire year returned to near control levels. The rare native geophyte Brodiaea kinkiensis was present throughout these grasslands and was not inhibited by burning treatments. To document the reliability of these patterns a second prescription burn was conducted on these sites 5 years after the first burn and vegetation recovery followed for the subsequent 4 years. Patterns observed after the first burn were duplicated following the second burn. The cover of S . pulchra varied in response to precipitation, with the 95% credible intervals of precipitation parameters overlapping zero, however, the cover of non-native grasses varied greatly with precipitation and had similar trajectories in unburned and burned plots.

California

Predicted distribution of ‘ua‘u (Hawaiian petrel Pterodroma sandwichensis) nest sites on Haleakalā, Maui

Haleakalā National Park and montane areas on east Maui, Hawaiian Archipelago, support critical nesting habitat for endangered ‘ua‘u Hawaiian petrel Pterodroma sandwichensis . Habitat loss, non-native predators, and damage by feral ungulates are limiting factors for ground-nesting petrels at Haleakalā and throughout Hawai‘i. Because nesting habitats differ among the Hawaiian Islands, habitat distribution modeling for Hawaiian petrel has been island specific. Based on 2453 known nest site locations, we provide the first landscape-scale predictive model describing relative abundance and habitat available for nesting petrels throughout upper Haleakalā (1830 to 3055 m). We evaluated (principal components analyses and Pearson’s correlation) 13 spatial landscape and climate predictor variables associated with nest sites and the background landscape followed by random forest modeling to predict nest site density. Six variables (elevation, slope, topographic position index at 2 scales, heat load index, presence-absence ash/cinder, and presence-absence vegetation) indicated nest sites occurred non-randomly throughout the central part of the summit and crater; greatest concentrations were predicted along the crater rim and a ridgeline extending southwest from the summit. Moderately high predicted density occurred in the northeastern and northern crater. Lower elevations to the north, west, and south flanks of Haleakalā had relatively fewer predicted nest sites. Although we focused on higher elevations on Haleakalā, there is no reason to suspect that conservation efforts would not be successful at lower elevations, provided nesting petrels were protected from invasive predators, grazing ungulates, and significant land alteration.

Hawaii

Assessing small-mammal trapping design using spatially explicit capture recapture (SECR) modeling on long-term monitoring data

Few studies have evaluated the optimal sampling design for tracking small mammal population trends, especially for rare or difficult to detect species. Spatially explicit capture-recapture (SECR) models present an advancement over non-spatial models by accounting for individual movement when estimating density. The salt marsh harvest mouse (SMHM; Reithrodontomys raviventris ) is a federal and California state listed endangered species endemic to the San Francisco Bay-Delta estuary, California, USA; where a population in a subembayment has been continually monitored over an 18-year period using mark-recapture methods. We analyzed capture data within a SECR modeling framework that allowed us to account for differences in detection and movement between sexes. We compared the full dataset to subsampling scenarios to evaluate how the grid size (area) of the trap design, trap density (spacing), and number of consecutive trapping occasions (duration) influenced density estimates. To validate the subsampling methods, we ran Monte Carlo simulations based on the true parameter estimates for each specific year. We found that reducing the area of the trapping design by more than 36% resulted in the inability of the SECR model to replicate density estimates within the SE of the original density estimates. However, when trapping occasions were reduced from 4 to 3-nights the density estimates were indistinguishable from the full dataset. Furthermore, reducing trap density by 50% also resulted in density estimates comparable to the full dataset and was a substantially better model than reducing the trap area by 50%. Overall, our results indicated that moderate reductions in the number of trapping occasions or trap density could yield similar density estimates when using a SECR approach. This approach allows the optimization of field trapping efforts and designs by reducing field efforts while maintaining the same population estimate compared to the full dataset. Using a SECR approach may help other wildlife programs identify sampling efficiencies without sacrificing data integrity for long term monitoring of population densities.

California

Contrasting geographic patterns of ignition probability and burn severity in the Mojave Desert

The extent and frequency of fire has increased in many arid systems over the last century, with a large proportion of area in some regions undergoing transitions to novel conditions. Portions of the Mojave Desert in southwestern North America have undergone such transitions, most often from woody to herbaceous-dominated systems. These transitions have often been attributed to the proliferation of invasive annual grasses that promote more frequent fire, but recent evidence indicates that transitions can also occur independent of fire frequency if burn severity is high. In addition, high probability of ignition (i.e., potentially high fire frequency) and high burn severity may not always be geographically related. Therefore, our goals were to: (1) map potential burn severity, fire frequency, and probability of ignition across the Mojave; and, (2) evaluate spatial association among predicted burn severity, fire frequency and probability of ignition. We first mapped perimeters of 250 wildfires > 405 ha that occurred from 1972 to 2010, then extracted data on fire frequency (number of times burned from 1972 to 2010), burn severity (the difference Normalized Burn Ratio), and 15 predictor variables representing physiography, climate, ignition, and vegetation. Maximum entropy was used to predict probability of ignition and Random Forest models were used to predict dNBR and fire frequency. Areas with high burn severity and high ignition probability had opposite spatial trends; areas with high burn severity were predicted to predominantly be in the northwest part of the region whereas areas with high ignition probability were predicted to be in the northeast. The models indicate the existence of a number of spatially structured but temporally dynamic fire regimes throughout the Mojave Desert. Two prevalent and ecologically significant regimes include one with frequent fires of low to moderate severity and another with infrequent fire of high severity. Areas with high fire frequency are currently limited in extent (<1% total area). However, cover of invasive grasses can remain high decades after a burn of high or moderate severity, so grass-fire cycles could develop in areas where there may be expectations of infrequent fire as well as those with relatively high fire frequency.

Arizona, California, Nevada, Utah

Informing wetland management with waterfowl movement and sanctuary use responses to human-induced disturbance

Long-term environmental management to prevent waterfowl population declines is informed by ecology, movement behavior and habitat use patterns. Extrinsic factors, such as human-induced disturbance, can cause behavioral changes which may influence movement and resource needs, driving variation that affects management efficacy. To better understand the relationship between human-based disturbance and animal movement and habitat use, and their potential effects on management, we GPS tracked 15 dabbling ducks in California over ~4-weeks before, during and after the start of a recreational hunting season in October/November 2018. We recorded locations at 2-min intervals across three separate 24-h tracking phases: Phase 1) two weeks before the start of the hunting season (control (undisturbed) movement); Phase 2) the hunting season opening weekend; and Phase 3) a hunting weekend two weeks after opening weekend. We used GLMM models to analyze variation in movement and habitat use under hunting pressure compared with ‘normal’ observed patterns prior to commencement of hunting. We also compared responses to differing levels of disturbance related to the time of day (high - shooting/~daytime); moderate - non-lethal (~crepuscular); and low - night). During opening weekend flight (% time and distance) more than doubled during moderate and low disturbance and increased by ~50% during high disturbance compared with the pre-season weekend. Sanctuary use tripled during moderate and low disturbance and increased ~50% during high disturbance. Two weeks later flight decreased in all disturbance levels but was only less than the pre-season levels during high disturbance. In contrast, sanctuary use only decreased at night, although not to pre-season levels, while daytime doubled from ~45% to >80%. Birds adjust rapidly to disturbance and our results have implications for energetics models that estimate population food requirements. Management would benefit from reassessing the juxtaposition of essential sanctuary and feeding habitats to optimize wetland management for waterfowl.

Journal of Environmental Management

Gene transcript profiling in desert bighorn sheep

Respiratory disease is a key factor affecting the conservation and recovery of bighorn sheep ( Ovis canadensis ) populations. Innovative, minimally invasive tools such as gene transcription–based diagnostics have the potential to improve our understanding of the broad range of factors that can affect the health of wild sheep. Evaluation of transcript levels for genes representative of multiple internal systems enables measurement of physiological responses of individuals as well as populations to environmental stressors such as pathogens, nutritional deficiency, or contaminants. We developed real‐time polymerase chain reaction assays for 14 genes of interest representing systems including inflammation, cell signaling, detoxification, antiviral, antibacterial, or general stress. Initial results from desert bighorn sheep ( O. c. nelsoni ) sampled from the River, Muddy, and Bare mountains as well as from the Pintwater Range, in southern Nevada, USA, indicated unique transcript profiles associated with each population. This initial study provides the framework from which controlled variable or longitudinal studies can be made, thus augmenting the potential to inform management actions in the future.

Nevada

Effects of invasive plants on fire regimes and postfire vegetation diversity in an arid ecosystem

We assessed the impacts of co‐occurring invasive plant species on fire regimes and postfire native communities in the Mojave Desert, western USA. We analyzed the distribution and co‐occurrence patterns of three invasive annual grasses (Bromus rubens, Bromus tectorum, and Schismus spp.) known to alter fuel conditions and community structure, and an invasive forb (Erodium cicutarium) which dominates postfire sites. We developed species distribution models (SDMs) for each of the four taxa and analyzed field plot data to assess the relationship between invasives and fire frequency, years postfire, and the impacts on postfire native herbaceous diversity. Most of the Mojave Desert is highly suitable for at least one of the four invasive species, and 76% of the ecoregion is predicted to have high or very high suitability for the joint occurrence of B. rubens and B. tectorum and 42% high or very high suitability for the joint occurrence of the two Bromus species and E. cicutarium. Analysis of cover from plot data indicated two or more of the species occurred in 77% of the plots, with their cover doubling with each additional species. We found invasive cover in burned plots increased for the first 20 years postfire and recorded two to five times more cover in burned than unburned plots. Analysis also indicated that native species diversity and evenness as negatively associated with higher levels of relative cover of the four invasive taxa. Our findings revealed overlapping distributions of the four invasives; a strong relationship between the invasives and fire frequency; and significant negative impacts of invasives on native herbaceous diversity in the Mojave. This suggests predicting the distributions of co‐occurring invasive species, especially transformer species, will provide a better understanding of where native‐dominated communities are most vulnerable to transformations following fire or other disturbances.

California, Nevada

Alternative pathways to landscape transformation: Invasive grasses, burn severity and fire frequency in arid ecosystems

Arid ecosystems are often vulnerable to transformation to invasive-dominated states following fire, but data on persistence of these states are sparse. The grass/fire cycle is a feedback process between invasive annual grasses and fire frequency that often leads to the formation of alternative vegetation states dominated by the invasive grasses. However, other components of fire regimes, such as burn severity, also have the potential to produce long-term vegetation transformations. Our goal was to evaluate the influence of both fire frequency and burn severity on the transformation of woody-dominated communities to communities dominated by invasive grasses in major elevation zones of the Mojave Desert of western North America. We used a chronosequence design to collect data on herbaceous and woody cover at 229 unburned reference plots and 578 plots that burned between 1972 and 2010. We stratified the plots by elevation zone (low, mid, high), fire frequency (1–3 times) and years post-fire (YPF; 1–5, 6–10, 11–20 and 21–40 YPF). Burn severity for each plot was estimated by the difference normalized burn ratio. We identified two broad post-fire successional pathways. One was an outcome of fire frequency, resulting in a strong potential transformation via the grass/fire cycle. The second pathway was driven by burn severity, the critical aspect being that long-term transformation of a community could occur from just one fire in areas that burned at high or sometimes moderate severity. Dominance by invasive grasses was most likely to occur in low-and high-elevation communities; cover of native herbaceous species was often greater than that of invasive grasses in the mid-elevation zone. Synthesis . Invasive grasses can dominate a site that burned only one time in many decades at high severity, or a site that burned at low severity but multiple times in the same time period. However, high burn severity may predispose areas to more frequent fire because they have relatively high cover of invasive annual grass, suggesting burn severity and fire frequency have both independent and synergistic effects. Resilience in vegetation structure following fire in many arid communities may be limited to a narrow window of low burn severity in areas that have not burned in many decades.

Mojave Desert

Implications of scale-independent habitat specialization on persistence of a rare small mammal

We assessed the habitat use patterns of the Amargosa vole Microtus californicus scirpensis , an endangered rodent endemic to wetland vegetation along a 3.5 km stretch of the Amargosa River in the Mojave Desert, USA. Our goals were to: (1) quantify the vole&rsquo;s abundance, occupancy rates and habitat selection patterns along gradients of vegetation cover and spatial scale; (2) identify the processes that likely had the greatest influence on its habitat selection patterns. We trapped voles monthly in six 1 ha grids from January to May 2012 and measured habitat structure at subgrid (View the MathML source225m2) and trap (View the MathML source1m2) scales in winter and spring seasons. Regardless of scale, analyses of density, occupancy and vegetation structure consistently indicated that voles occurred in patches of bulrush (Schoenoplectus americanus ; Cyperaceae) where cover >50%. The majority of evidence indicates the vole's habitat selectivity is likely driven by bulrush providing protection from intense predation. However, a combination of selective habitat use and limited movement resulted in a high proportion of apparently suitable bulrush patches being unoccupied. This suggests the Amargosa vole's habitat selection behavior confers individual benefits but may not allow the overall population to persist in a changing environment.

Global Ecology and Conservation

Evaluating potential overlap between pack stock and Sierra Nevada bighorn sheep ( Ovis canadensis sierrae ) in Sequoia and Kings Canyon National Parks, California

Pack stock (horses, mules, burros, llamas, and goats) are frequently assumed to have negative effects on public lands, but there is a general lack of data to be able to quantify the degree to which this is actually the case. Sequoia and Kings Canyon National Parks have received complaints that pack stock may affect Sierra Nevada bighorn sheep ( Ovis canadensis sierrae ; SNBS), a federally endangered subspecies that occurs in largely disjunct herds in the Sierra Nevada Range of California. The potential effects are thought to be displacement of SNBS from meadows on their summer range (altered habitat use) or, more indirectly, through changes in SNBS habitat or forage quality. Our goals were to conduct an association analysis to quantify the degree of potential spatial overlap in meadow use between SNBS and pack stock and to compare differences in vegetation community composition, structure, and diversity among meadows with different levels of use by bighorn sheep and pack stock. For the association analysis, we used two approaches: (1) we quantified the proportion of meadows that were within the herd home ranges of bighorn sheep and were potentially open to pack stock, and, (2) we used Monte Carlo simulations and use-availability analyses to compare the proportion of meadows used by bighorn sheep relative to the proportional occurrence or area of meadows available to bighorn sheep that were used by pack stock. To evaluate potential effects of pack stock on meadow plant communities and SNBS forage, we sampled vegetation in 2011 and 2012 at 100 plots to generate data that allowed us to compare: 1. Herbaceous plant species composition, structure, and diversity in plots with different combinations of use by pack stock and SNBS; 2. Cover of bare ground in plots with different combinations of use by pack stock and SNBS; and, 3. Total cover, diversity, and species composition of SNBS forage species in plots with different combinations of use by pack stock and SNBS. The association analyses indicated the potential for overlap between pack stock and SNBS was minimal; only 1 percent of the potential meadow area in the SNBS herd home ranges overlapped that of pack stock meadows. There were no systematic differences in overall vegetation structure or composition, or in diversity, cover, or composition of forage species, that indicated pack stock were altering SNBS habitat or affecting their nutrition. Variation in plant species composition was influenced primarily by random differences among meadows and environmental gradients, and there was little evidence that pack stock use contributed in meaningful ways to this variation. The few differences among meadows with different levels of use by bighorn sheep and pack stock either were minor or were not in a direction consistent with negative effects of pack stock on SNBS. We conclude that the current plan for managing pack stock grazing has been successful in minimizing significant negative effects on Sierra Nevada bighorn sheep at Sequoia and Kings Canyon National Parks.

California

Comparison of elevation and remote sensing derived products as auxiliary data for climate surface interpolation

Climate models may be limited in their inferential use if they cannot be locally validated or do not account for spatial uncertainty. Much of the focus has gone into determining which interpolation method is best suited for creating gridded climate surfaces, which often a covariate such as elevation (Digital Elevation Model, DEM) is used to improve the interpolation accuracy. One key area where little research has addressed is in determining which covariate best improves the accuracy in the interpolation. In this study, a comprehensive evaluation was carried out in determining which covariates were most suitable for interpolating climatic variables (e.g. precipitation, mean temperature, minimum temperature, and maximum temperature). We compiled data for each climate variable from 1950 to 1999 from approximately 500 weather stations across the Western United States (32° to 49° latitude and −124.7° to −112.9° longitude). In addition, we examined the uncertainty of the interpolated climate surface. Specifically, Thin Plate Spline (TPS) was used as the interpolation method since it is one of the most popular interpolation techniques to generate climate surfaces. We considered several covariates, including DEM, slope, distance to coast (Euclidean distance), aspect, solar potential, radar, and two Normalized Difference Vegetation Index (NDVI) products derived from Advanced Very High Resolution Radiometer (AVHRR) and Moderate Resolution Imaging Spectroradiometer (MODIS). A tenfold cross-validation was applied to determine the uncertainty of the interpolation based on each covariate. In general, the leading covariate for precipitation was radar, while DEM was the leading covariate for maximum, mean, and minimum temperatures. A comparison to other products such as PRISM and WorldClim showed strong agreement across large geographic areas but climate surfaces generated in this study (ClimSurf) had greater variability at high elevation regions, such as in the Sierra Nevada Mountains.

International Journal of Climatology

Seed harvesting is influenced by associational effects in mixed seed neighbourhoods, not just by seed density

Rodents frequently forage in a density-dependent manner, increasing harvesting in patches with greater seed densities. Although seldom considered, seed harvesting may also depend on the species identities of other individuals in the seed neighbourhood. When the seed harvest of a focal species increases in association with another seed species, the focal species suffers from Associational Susceptibility. In contrast, if seeds of the focal species are harvested less when in association with a second species, the focal species benefits from Associational Resistance. To evaluate density dependence and associational effects among seeds in mixtures, we conducted seed removal experiments using a completely additive design patterned after a two-species competition experiment using seeds of either Achnatherum hymenoides (Indian ricegrass), Leymus cinereus (basin wildrye) or Pseudoroegneria spicata (bluebunch wheatgrass), all native perennial grasses, combined with seeds of Bromus tectorum (cheatgrass), a non-native annual grass. The experiment involved placing five fixed quantities of the native seeds mixed with five fixed quantities of B. tectorum seeds in a factorial design, resulting in 35 seed mixture combinations. The seed-eating rodent community at our study sites, in order of abundance, is composed of Peromyscus maniculatus (North American deer mouse), Dipodomys ordii (Ord's kangaroo rat) and Perognathus parvus (Great Basin pocket mouse). Native seed harvesting was density dependent, with a greater proportion of seeds being harvested as density increased. In the mixed density model, the presence of B. tectorum did not affect harvest of any of the native species' seeds when analysed individually. However, when all three native species were analysed together, increasing quantities of B. tectorum resulted in reduced harvest of native seeds, demonstrating weak but significant Associational Resistance. In contrast, harvest of B. tectorum seeds increased when in combination with any of the native seed species individually, indicating relatively strong Associational Susceptibility. These results demonstrate that seed harvest is determined not just by seed density, but also by the local seed neighbourhood and suggest that associational effects between native seeds and B. tectorum can occur in field conditions. The ecological implications of seed selection and associational effects on plant populations in natural and managed systems are also discussed.

Functional Ecology