Geology topics

Richard R. McDonald

Publications and source records attributed to Richard R. McDonald.

At least 19 recordsLinked to original sources

USGS2024

The influence of channel morphology and hydraulic complexity on larval pallid sturgeon (Scaphirhynchus albus) drift and dispersal dynamics in the Fort Peck Segment, Upper Missouri River: Insights from particle tracking simulations

Longitudinal dispersal of migratory fish species can be interrupted by factors that fragment rivers, such as dams and reservoirs with incompatible habitats, and indirect alterations to variables, such as water temperature or turbidity. The endangered pallid sturgeon ( Scaphirhynchus albus ) population in the Upper Missouri River Basin in North Dakota and Montana is an example of such fragmentation and alteration due to the construction of dams. We applied a high-resolution, 2+-dimensional modelling framework composed of hydrodynamic and Lagrangian particle tracking components to simulate pallid sturgeon larval drift and dispersal along a 33-km section of the Upper Missouri River to evaluate three main issues: a comparison between multidimensional models and traditional 1-dimensional models, the sensitivity of hydrodynamics to channel morphology, and the implications of channel morphology on retention and transport-time metrics for larval fish. The results indicate that multidimensional models better represent breakthrough curves of transporting larvae compared to 1-dimensional models, especially for the long tail of slow drifters in the population. Results also indicate that channel morphology and hydraulic complexity play significant roles in larval dispersal with certain flow conditions and channel features increasing larval retention and providing potential management options to increase survival rates by adjusting flow conditions during spawning events. For example, modelling indicates increased retention times at discharges 23–38% daily flow exceedance, coincident with emergence of mid-channel sandbars. Findings additionally emphasize the need for improved understanding of biological factors that affect larval drift and dispersal.

Montana, North Dakota↗

USGS2023

Community for data integration 2019 project report

The U.S. Geological Survey Community for Data Integration annually supports small projects focusing on data integration for interdisciplinary research, innovative data management, and demonstration of new technologies. This report provides a summary of the 14 projects supported in fiscal year 2019 and outlines their goals, activities, and accomplishments. Proposals in 2019 were encouraged to address the optional disciplinary theme of biosurveillance of emerging invasive species and health threats.

Open-File Report↗

USGS2022

The MODFLOW Application Programming Interface for simulationcontrol and software interoperability

The MODFLOW API allows other programs to control MODFLOW and interactively change variables without having to modify the source code. The MODFLOW API is based on the Basic Model Interface (BMI), which is a set of conventions that define how to initialize a simulation, update the model state by advancing in time, and finalize the run. For many existing MODFLOW coupling applications, the information provided to MODFLOW must be updated multiple times in a time step. As this capability to modify variables within a time step is not defined by the BMI, an extension to BMI was developed. This eXtended Model Interface is part of the MODFLOW API and allows such a tight coupling to other models. Examples are included for a variety of use cases, including new flexibility for users to develop custom packages without modifying the MODFLOW source code and coupling MODFLOW with other models and optimization libraries.

Environmental Modelling & Software↗

USGS2021

Kootenai River white sturgeon (Acipenser transmontanus) fine-scale habitat selection and preference, Kootenai River near Bonners Ferry, Idaho, 2017

To quantify fine-scale Kootenai River white sturgeon ( Acipenser transmontanus ) staging and spawning habitat selection and preference within a recently restored reach of the Kootenai River, the U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, integrated acoustic telemetry data with two-dimensional hydraulic model simulations within a 1.5-kilometer reach of the Kootenai River near Bonners Ferry, northern Idaho. Twenty-seven individual Kootenai River white sturgeon were detected in the study reach during May 6–June 30, 2017. The largest concentration of fish positions occurred near the edge of the gravel bar adjacent to the right bank pool-forming structure and additional concentrations of fish positions occurred near two recently constructed rock substrate clusters. The difference in preferred and available depth distributions quantifies that Kootenai River white sturgeon generally preferred depths of 7–11.5 meters, deeper than the most frequently available depths. About 71 percent of the detections occurred within the lower one-third of the water column, placing Kootenai River white sturgeon at or near the channel bed. The difference in available and preferred water velocities indicated that Kootenai River white sturgeon generally preferred a wide range of velocities from 0.0 to 1.0 meters per second, and generally preferred velocities that were less than the most frequently occurring available velocities. Kootenai River white sturgeon generally preferred the downstream part of the study area where water velocities were less than those in the upstream part. This study concludes that Kootenai River white sturgeon generally avoided shallow areas with increased velocities and generally favored deep areas with lower velocities near recently constructed restoration structures.

Idaho↗

USGS2020

Incipient bed-movement and flood-frequency analysis using hydrophones to estimate flushing flows on the upper Colorado River, Colorado, 2019

In 2019, the U.S. Geological Survey, in cooperation with the Upper Colorado River Wild and Scenic Stakeholder Group, studied the magnitude and recurrence interval of streamflow (discharge) needed to initiate bed movement of gravel-sized and finer sediment in a segment of the Colorado River in Colorado to better understand sediment movement and its relation to flow regimes of the river. The study area extended from the confluence of the Blue and Colorado Rivers near Kremmling, Colorado, downstream to the confluence of the Eagle and Colorado Rivers near Dotsero, Colo. Bed movement occurred more frequently and at lower streamflows from State Bridge to Catamount Bridge compared to the study area upstream from State Bridge. As a result, the flushing flow was characterized in the study area using two definitions: the “upstream flushing flow” for locations above State Bridge and the “downstream flushing flow” for locations below State Bridge. Acoustic data from stationary hydrophones continuously deployed in the spring and summer of 2019 and longitudinal hydrophone acoustic profiles manually collected in summer 2019 were used to identify the streamflow needed for incipient gravel-bed movement and establish flushing flows defined for this study. The upstream flushing flow was defined as 3,000 cubic feet per second (ft 3 /s) at streamgage 09058000 Colorado River near Kremmling, Colo. (the Kremmling streamgage) based on the underwater acoustic data from the downstream location at the Radium stationary site (2,950 ft 3 /s at the Kremmling streamgage which was rounded to 3,000 ft 3 /s). The downstream flushing flow was defined as 2,400 ft 3 /s at the Kremmling streamgage or 3,100 ft 3 /s at streamgage 09060799 Colorado River at Catamount Bridge, Colo. (the Catamount Bridge streamgage) based on the more conservative streamflow associated with the flushing flow defined using underwater acoustic data from the downstream location at the above Catamount Bridge stationary site (2,310 ft 3 /s at the Kremmling streamgage which was rounded to 2,400 ft 3 /s and 3,040 ft 3 /s at the Catamount Bridge streamgage which was rounded to 3,100 ft 3 /s). The annual series of peak-streamflow data at the Kremmling streamgage were used to estimate annual exceedance probability (AEP) streamflows to compare to the flushing flow. Results from the Denver Water Platte and Colorado Simulation Model were used to generate daily peak-streamflows for a future conditions scenario provided for this report. The upstream flushing flow of approximately 3,000 ft 3 /s at the Kremmling streamgage has an AEP near 0.50 (2-year return period) depending on the period of historical record and an AEP near 0.43 (2.33-year return period) for the future period. The downstream flushing flow of approximately 2,400 ft 3 /s at the Kremmling streamgage has an AEP near 0.67 (1.5-year return period) depending on the period of historical record and an AEP near 0.67 (1.5-year return period) for the future period.

Colorado↗

USGS2020

A Lagrangian particle-tracking approach to modelling larval drift in rivers

The migration of larval fish from spawning to rearing habitat in rivers is not well understood. This paper describes a methodology to predict larval drift using a Lagrangian particle-tracking (LPT) model with passive and active behavioural components loosely coupled to a quasi-three-dimensional hydraulic model. In the absence of measured larval drift, a heuristic approach is presented for the larval drift of two species of interest, white sturgeon ( Acipenser transmontanus ) and burbot ( Lota lota ), in the Kootenai River, Idaho. Previous studies found that many fish species prefer certain vertical zones within the water column; sturgeon tend to be found near the bottom and burbot close to the water surface. Limiting the vertical movement of larvae is incorporated into the active component of the LPT model. The results illustrate a pattern of drift where secondary flow in meander bends and other zones of flow curvature redistributes particles toward the outside of the bend for surface drifters and toward the inside of the bend for bottom drifters. This pattern periodically reinforces the intersection of drifting larvae with channel margins in meander bends. In the absence of measured larval drift data, the model provides a tool for hypothesis testing and a guide to both field and laboratory experiments to further define the role of active behaviour in drifting larvae.

Idaho↗

USGS2019

Remote sensing of tracer dye concentrations to support dispersion studies in river channels

In river channels the flow field influences the dispersion of biota, contaminants, and other suspended or dissolved materials. Insight on patterns and rates of dispersion can be gained by injecting a pulse of visible dye and observing spatial and temporal variations in dye concentration as the pulse moves downstream. We evaluated the potential of passive optical remote sensing to enhance such tracer experiments by providing spatially distributed concentration information. During tests performed in both an experimental flume facility and a large natural channel, we made field measurements of Rhodamine WT dye concentration and above-water spectral reflectance. At Korea's River Experiment Center, a small unmanned aircraft system (sUAS) was used to acquire hyperspectral images of a sinuous outdoor flume. On the Kootenai River in northern Idaho, USA, field spectra were collected from a boat and hyperspectral image data and high resolution aerial photographs were obtained from manned aircraft. We modified an Optimal Band Ratio Analysis (OBRA) algorithm to identify wavelength combinations that yielded strong correlations between a spectrally based quantity X and dye concentration C. For both the flume and field tests, we obtained very strong (R^2 from 0.94 to 0.99) relationships between X and C across a broad range of visible wavelengths. On the Kootenai, we found that X vs. C relations derived from field spectra could be applied to airborne hyperspectral images and that dye concentrations could be estimated nearly as reliably from relatively simple three-band images as from hyperspectral data. These results imply that remote sensing could become a powerful tool for mapping dye patterns. Such a capability would advance our understanding of dispersion processes by enabling more rigorous testing of numerical flow models.

Journal of Ecohydraulics↗

USGS2018

New methods for predicting and measuring dispersion in rivers

To develop a better predictive tool for dispersion in rivers over a range of temporal and spatial scales, our group has developed a simple Lagrangian model that is applicable for a wide range of coordinate systems and flow modeling methodologies. The approach allows dispersion computations for a large suite of discretizations, model dimensions (1-, 2-, or 3-dimensional), spatial and temporal discretization, and turbulence closures. As the model is based on a discrete non-interacting particle approach, parallelization is straightforward, such that simulations with large numbers of particles are tractable. Results from the approach are compared to dispersion measurements made with conventional Rhodamine WT dye experiment in which typical at-a-point sensors are employed to determine concentration. The model performs well, but spatial resolution for experiments over large and or complex river flows was inadequate for model testing. To address this issue, we explored the idea of measuring spatial concentrations in river flows using hyperspectral remote sensing. Experiments both for idealized channels and real rivers show that this technique is viable and can provide high levels of spatial detail in concentration measurements with quantitatively accurate concentrations.

Conference Paper↗

USGS2018

Streamflow, sediment transport, and geomorphic change during the 2011 flood on the Missouri River near Bismarck-Mandan, ND

Geomorphic change from extreme events in large managed rivers has implications for river management. A steady-state, quasi-three-dimensional hydrodynamic model was applied to a 29-km reach of the Missouri River using 2011 flood data. Model results for an extreme flow (500-year recurrence interval [RI]) and an elevated managed flow (75-year RI) were used to assess sediment mobility through examination of the spatial distribution of boundary or bed shear stress ( τ b ) and longitudinal patterns of average τ b , velocity, and kurtosis of τ b . Kurtosis of τ b was used as an indicator of planform channel complexity and can be applied to other river systems. From differences in longitudinal patterns of sediment mobility for the two flows we can infer: (1) under extreme flow, the channel behaves as a single-thread channel controlled primarily by flow, which enhances the meander pattern; (2) under elevated managed flows, the channel behaves as multithread channel controlled by the interaction of flow with bed and channel topography, resulting in a more complex channel; and (3) for both flows, the model reach lacks a consistent pattern of deposition or erosion, which indicates migration of areas of erosion and deposition within the reach. Despite caveats and limitations, the analysis provides useful information about geomorphic change under extreme flow and potential implications for river management. Although a 500-year RI is rare, extreme hydrologic events such as this are predicted to increase in frequency.

North Dakota↗

USGS2018

Fine-scale habitat preference of green sturgeon (Acipenser medirostris) within three spawning locations in the Sacramento River, California

Vast sections of the Sacramento River have been listed as critical habitat by the National Marine Fisheries Service for green sturgeon spawning ( Acipenser medirostris ), yet spawning is known to occur at only a few specific locations. This study reveals the range of physical habitat variables selected by adult green sturgeon during their spawning period. We integrated fine-scale fish positions, physical habitat characteristics, discharge, bathymetry, and simulated velocity and depth using a 2-dimensional hydraulic model (FaSTMECH). The objective was to create habitat suitability curves for depth, velocity, and substrate type within three known spawning locations over two years. An overall cumulative habitat suitability score was calculated that averaged the depth, velocity, and substrate scores over all fish, sites, and years. A weighted usable area (WUA) index was calculated throughout the sampling periods for each of the three sites. Cumulative results indicate that the microhabitat characteristics most preferred by green sturgeon in these three spawning locations were velocities between 1.0-1.1 m/s, depths of 8-9 m, and gravel and sand substrate. This study provides guidance for those who may in the future want to increase spawning habitat for green sturgeon within the Sacramento River.

California↗

USGS2017

Estimating floodwater depths from flood inundation maps and topography

Information on flood inundation extent is important for understanding societal exposure, water storage volumes, flood wave attenuation, future flood hazard, and other variables. A number of organizations now provide flood inundation maps based on satellite remote sensing. These data products can efficiently and accurately provide the areal extent of a flood event, but do not provide floodwater depth, an important attribute for first responders and damage assessment. Here we present a new methodology and a GIS-based tool, the Floodwater Depth Estimation Tool (FwDET), for estimating floodwater depth based solely on an inundation map and a digital elevation model (DEM). We compare the FwDET results against water depth maps derived from hydraulic simulation of two flood events, a large-scale event for which we use medium resolution input layer (10 m) and a small-scale event for which we use a high-resolution (LiDAR; 1 m) input. Further testing is performed for two inundation maps with a number of challenging features that include a narrow valley, a large reservoir, and an urban setting. The results show FwDET can accurately calculate floodwater depth for diverse flooding scenarios but also leads to considerable bias in locations where the inundation extent does not align well with the DEM. In these locations, manual adjustment or higher spatial resolution input is required.

Journal of the American Water Resources Associatio↗

USGS2017

Modeling hydraulic and sediment transport processes in white sturgeon spawning habitat on the Kootenai River, Idaho

The Kootenai River white sturgeon currently spawn (2005) in an 18-kilometer reach of the Kootenai River, Idaho. Since completion of Libby Dam upstream from the spawning reach, there has been only one successful year of recruitment of juvenile fish. Where successful in other rivers, white sturgeon spawn over clean coarse material of gravel size or larger. The channel substrate in the current spawning reach is composed primarily of sand and some buried gravel; within a few kilometers upstream there is clean gravel. We used a 2-dimensional flow and sediment-transport model and the measured locations of sturgeon spawning from 1994-2002 to gain insight into the paradox between the current spawning location and the absence of suitable substrate. Spatial correlations between spawning locations and the model simulations of velocity and depth indicate the white sturgeon tend to select regions of highest velocity and depth within any river cross-section to spawn. These regions of high velocity and depth are independent of pre- or post-dam flow conditions. A simple sediment-transport simulation suggests that high discharge and relatively long duration flow associated with pre-dam flow events might be sufficient to scour the sandy substrate and expose existing lenses of gravel and cobble as lag deposits in the current spawning reach.

Idaho↗

USGS2017

Using remotely sensed data to estimate river characteristics including water-surface velocity and discharge

This paper describes a project combining field studies and analyses directed at providing an assessment of the accuracy of remotely sensed methods for determining river characteristics such as velocity and discharge. In particular, we describe a remote sensing method for surface velocities using mid-wave thermal camera videography combined with image analysis. One of the critical problems in this work is determining a method for relating remotely measured water-surface velocities to vertically averaged velocities through a velocity index. We explore three similarity profiles that allow a relationship between surface and vertically averaged velocity to be found either using empirical results or simple roughness-to-depth ratios. To test the approaches we compare them in a situation where vertical structure is known over most of the flow depth through ADCP measurements. By determining best-fit profiles through the ADCP profiles, average values of the velocity index are found for the cross-sections where measurement were made. By comparing these to the predicted velocity indices from the three similarity profiles, we find that, although the differences between the various similarity profiles are substantial, they are smaller than differences associated with local nonuniformity and nonhydrostatic flow. Nevertheless, the velocity indices are accurate to about +/-5%, meaning that remotely sensed vertically averaged velocities can be computed to well within the current accuracy standard for such values when used for river gaging.

Conference Paper↗

USGS2016

Modeling flow, sediment transport and morphodynamics in rivers

Predicting the response of natural or man-made channels to imposed supplies of water and sediment is one of the difficult practical problems commonly addressed by fluvial geomorphologists. This problem typically arises in three situations. In the first situation, geomorphologists are attempting to understand why a channel or class of channels has a certain general form; in a sense, this is the central goal of fluvial geomorphology. In the second situation, geomorphologists are trying to understand and explain how and why a specific channel will evolve or has evolved in response to altered or unusual sediment and water supplies to that channel. For example, this would include explaining the short-term response of a channel to an unusually large flood or predicting the response of a channel to long-term changes in flow or sediment supply due to various human activities such as damming or diversions. Finally, geomorphologists may be called upon to design or assess the design of proposed man-made channels that must carry a certain range of flows and sediment loads in a stable or at least quasi-stable manner. In each of these three situations, the problem is really the same: geomorphologists must understand and predict the interaction of the flow field in the channel, the sediment movement in the channel and the geometry of the channel bed and banks. In general, the flow field, the movement of sediment making up the bed and the morphology of the bed are intricately linked; the flow moves the sediment, the bed is altered by erosion and deposition of sediment and the shape of the bed is critically important for predicting the flow. This complex linkage is precisely what makes understanding channel form and process such a difficult and interesting challenge.

Book chapter↗

USGS2016

The international river interface cooperative: Public domain flow and morphodynamics software for education and applications

This paper describes a new, public-domain interface for modeling flow, sediment transport and morphodynamics in rivers and other geophysical flows. The interface is named after the International River Interface Cooperative (iRIC), the group that constructed the interface and many of the current solvers included in iRIC. The interface is entirely free to any user and currently houses thirteen models ranging from simple one-dimensional models through three-dimensional large-eddy simulation models. Solvers are only loosely coupled to the interface so it is straightforward to modify existing solvers or to introduce other solvers into the system. Six of the most widely-used solvers are described in detail including example calculations to serve as an aid for users choosing what approach might be most appropriate for their own applications. The example calculations range from practical computations of bed evolution in natural rivers to highly detailed predictions of the development of small-scale bedforms on an initially flat bed. The remaining solvers are also briefly described. Although the focus of most solvers is coupled flow and morphodynamics, several of the solvers are also specifically aimed at providing flood inundation predictions over large spatial domains. Potential users can download the application, solvers, manuals, and educational materials including detailed tutorials at www.-i-ric.org . The iRIC development group encourages scientists and engineers to use the tool and to consider adding their own methods to the iRIC suite of tools.

Advances in Water Resources↗

USGS2016

Field scale test of multi-dimensional flow and morphodynamic simulations used for restoration design analysis

Two- and three-dimensional morphodynamic simulations are becoming common in studies of channel form and process. The performance of these simulations are often validated against measurements from laboratory studies. Collecting channel change information in natural settings for model validation is difficult because it can be expensive and under most channel forming flows the resulting channel change is generally small. Several channel restoration projects designed in part to armor large meanders with several large spurs constructed of wooden piles on the Kootenai River, ID, have resulted in rapid bed elevation change following construction. Monitoring of these restoration projects includes post- restoration (as-built) Digital Elevation Models (DEMs) as well as additional channel surveys following high channel forming flows post-construction. The resulting sequence of measured bathymetry provides excellent validation data for morphodynamic simulations at the reach scale of a real river. In this paper we test the performance a quasi-three-dimensional morphodynamic simulation against the measured elevation change. The resulting simulations predict the pattern of channel change reasonably well but many of the details such as the maximum scour are under predicted.

Conference Paper↗

USGS2016

Hanson Russian River Ponds floodplain restoration: Feasibility study and conceptual design; Appendix G: Physical evaluation of the restoration alternatives

Appendix G: Hanson Russian River Ponds Floodplain Restoration: Feasibility Study and Conceptual Design |G-1Appendix GPhysical Evaluation of the Restoration AlternativesRichard McDonald and Jonathan Nelson, PhDU.S. Geological Survey Geomorphology and Sediment Transport Laboratory, Golden, ColoradoIntroductionTo assess the relative and overall impacts of the scenarios proposed in Chapters 7 and 9,(Stage I-A–I-D and Stage II-A –II-E), each of the topographic configurations were evaluated over a range of flows. Thisevaluation was carried out using computational flow modeling tools available in the iRIC public-domain river modeling interface (www.i-ric.org, Nelsonet al.in press). Using the iRIC modeling tools described in more detail below, basic hydraulic computations of water-surface elevation, velocity, shear stress, and other hydraulic variables were carried out for the alternatives in the reach surrounding the project area, from the confluence of Dry Creek upstream to the Wohler road bridge downstream, for the full range of observed flows. This methodology allows comparison of the current channel configuration with the proposed alternatives in terms of inundation period and frequency, depth, water velocity, and other hydraulic information. By integrating this kind of information over the reach of interest and the flow record, critical metrics assessing the impacts of various topographic modifications can be compared to those same metrics for the existing condition or other modification scenarios. In addition, because the iRIC tools include predictions of sediment mobility, suspension of fines, and the potential evolution of the land surface in response to flow, these methods provide evaluation of sediment transport, stability of current and proposed surfaces, and evaluation of how these surfaces might evolve into the future. This hydraulic and sediment transport information is critically important for understanding theimpacts of various proposed alternatives on the physical system; perhaps even more importantly given the objectives of the proposed restoration, this information can be related to biological impacts, as is discussed in subsequent chapters of this document.

Book chapter↗

USGS2016

Field and laboratory determination of water-surface elevation and velocity using noncontact measurements

Noncontact methods for measuring water-surface elevation and velocity in laboratory flumes and rivers are presented with examples. Water-surface elevations are measured using an array of acoustic transducers in the laboratory and using laser scanning in field situations. Water-surface velocities are based on using particle image velocimetry or other machine vision techniques on infrared video of the water surface. Using spatial and temporal averaging, results from these methods provide information that can be used to develop estimates of discharge for flows over known bathymetry. Making such estimates requires relating water-surface velocities to vertically averaged velocities; the methods here use standard relations. To examine where these relations break down, laboratory data for flows over simple bumps of three amplitudes are evaluated. As anticipated, discharges determined from surface information can have large errors where nonhydrostatic effects are large. In addition to investigating and characterizing this potential error in estimating discharge, a simple method for correction of the issue is presented. With a simple correction based on bed gradient along the flow direction, remotely sensed estimates of discharge appear to be viable.

Conference Paper↗