Geology topics

Phaedra E. Budy

Publications and source records attributed to Phaedra E. Budy.

At least 37 records · Page 2Linked to original sources

USGS2022

Failure to achieve recommended environmental flows coincides with declining fish populations: Long-term trends in regulated and unregulated rivers

Dams can be operated to mimic components of the natural flow regime to minimise impacts on downstream ecosystems. However, infrastructure, societal needs, water management, and catchment runoff constrain which and when flow regime attributes can be mimicked. We compared fish assemblage responses, including native and non-native species, over 2 decades of managed environmental flows to those in a river retaining a relatively unaltered flow regime. Both of these arid-land rivers are within the overallocated Colorado River basin and have experienced declines in catchment runoff over the past 20 years. We predicted that fish–flow relationships would be conserved across time and between managed and unmanaged rivers. Declines in flow in both rivers coincided with declines in some native fishes, and more native and non-native fish species exhibited declines in the managed river than in the unmanaged river. Our ability to detect previously documented native fish–flow relationships diminished in the managed river system because established environmental flow targets were not met due to water management, but we detected these fish–flow relationships in the unmanaged river. Our results suggest declining catchment runoff and increased consumptive water use could reduce the effectiveness of environmental flows that have lower priority in most years.

Freshwater Biology↗

USGS2022

Life and death in a dynamic environment: Invasive trout, floods, and intraspecific drivers of translocated populations

Understanding the relative strengths of intrinsic and extrinsic factors regulating populations is a long-standing focus of ecology and critical to advancing conservation programs for imperiled species. Conservation could benefit from an increased understanding of factors influencing vital rates (somatic growth, recruitment, survival) in small, translocated populations, which is lacking owing to difficulties in long-term monitoring of rare species. Translocations, here defined as the transfer of wild-captured individuals from source populations to new habitats, are widely used for species conservation, but outcomes are often minimally monitored, and translocations that are monitored often fail. To improve our understanding of how translocated populations respond to environmental variation, we developed and tested hypotheses related to intrinsic (density dependent) and extrinsic (introduced rainbow trout Oncorhynchus mykiss , stream flow and temperature regime) causes of vital rate variation in endangered humpback chub ( Gila cypha ) populations translocated to Colorado River tributaries in the Grand Canyon (GC), USA. Using biannual recapture data from translocated populations over 10 years, we tested hypotheses related to seasonal somatic growth, and recruitment and population growth rates with linear mixed-effects models and temporal symmetry mark–recapture models. We combined data from recaptures and resights of dispersed fish (both physical captures and continuously recorded antenna detections) from throughout GC to test survival hypotheses, while accounting for site fidelity, using joint live-recapture/live-resight models. While recruitment only occurred in one site, which also drove population growth (relative to survival), evidence supported hypotheses related to density dependence in growth, survival, and recruitment, and somatic growth and recruitment were further limited by introduced trout. Mixed-effects models explained between 67% and 86% of the variation in somatic growth, which showed increased growth rates with greater flood-pulse frequency during monsoon season. Monthly survival was 0.56–0.99 and 0.80–0.99 in the two populations, with lower survival during periods of higher intraspecific abundance and low flood frequency. Our results suggest translocations can contribute toward the recovery of large-river fishes, but continued suppression of invasive fishes to enhance recruitment may be required to ensure population resilience. Furthermore, we demonstrate the importance of flooding to population demographics in food-depauperate, dynamic, invaded systems.

Arizona↗

USGS2022

Effective conservation of desert riverscapes requires protection and restoration of in-stream flows with rehabilitation approaches tailored to water availability

Desert riverscape rehabilitation practitioners must contend with compounding effects of increasing human water demand, persistent drought, non-native species establishment, and climate change, which further stress desert riverine ecosystems such as rivers in the Colorado River basin, United States. Herein, we provide our perspective on the importance of natural flows, large floods in particular, for successful conservation and rehabilitation of riverscapes. We present ideas developed from our experience with rehabilitation projects across multiple desert tributary rivers with varying levels of habitat degradation and water abstraction. We propose spatially extensive measures such as protection of in-stream flows, tailoring rehabilitation efforts to available annual water availability, and working with nature using low-tech process-based techniques to more completely address the mechanisms of habitat degradation, such as flow reduction and vegetation-induced channel narrowing. Traditionally, rehabilitation efforts in the Colorado River basin take place at relatively small spatial extents, at convenient locations and, largely focus on reducing non-native plant and fish species. We suggest that we need to think more broadly and creatively, and that conservation or recovery of natural flow regimes is crucial to long-term success of almost all management efforts for both in-stream and riparian communities.

Frontiers in Environmental Science↗

USGS2022

High densities of conspecifics buffer native fish from negative interactions with an ecologically similar invasive

Invasive species are a leading cause for native species declines, but it remains unclear whether maintenance of high native densities influence native persistence in freshwater systems. We designed complementary laboratory and field experiments to test whether high native cutthroat trout (Oncorhynchus clarkii) densities affect competition with invasive brown trout (Salmo trutta). We manipulated density of native cutthroat trout while holding brown trout density constant. Interspecific aggressive interactions towards native cutthroat trout were 66% fewer in the highest cutthroat trout density treatment compared to the lowest density treatment. At high densities of conspecifics, cutthroat trout, sympatric with brown trout, lost 33-81% less weight and demonstrated 1.5 times greater survival in both experiments than at low conspecific densities. Cutthroat trout held at low densities in laboratory experiments experienced greater stress-related disease virulence and negative effects of harassment, apparently owing to more frequent aggressive interactions with brown trout. These results support the hypothesis that reduced per capita effects of invaders on native fish at high densities buffers native species from negative effects of invaders, reducing the potential for invasive fish to displace high density native fish populations.

Utah↗

USGS2022

Native fish need a natural flow regime

Water development has threatened the ecological integrity of riverine ecosystems. Increasing water demand, persistent drought, and climate change exacerbate the effects of habitat degradation and loss in altered systems such as the Colorado River basin. Today, biologists are challenged to identify management actions that benefit native fishes while not hindering water development or management. Herein, we discuss the importance of the natural flow regime for functioning riverine ecosystems and provide examples from four tributaries to the Green River, a major headwater branch of the Colorado River. These tributaries represent a gradient of impacts ranging from water abstraction to the point of complete seasonal desiccation to a relatively natural flow regime, and consequently have maintained different levels of instream habitat complexity and native fish persistence. Despite decades of management, endangered species lack self-sustaining populations and other native species have been extirpated from over half their ranges, which begs the question: can water development and fish conservation be balanced under current water laws and climate change-driven declines in runoff? Given the continued decline in freshwater biodiversity and abundance occurring across the globe, we contend that immediate designation of rivers with natural flow regimes as freshwater conservation areas will enhance native species recovery.

Arizona, Colorado, Utah, Wyoming↗

USGS2022

Conflicts among protected native birds and valuable sport fishes: Potential pelican predation effects

Reservoirs are examples of novel ecosystems that have developed into popular sport fisheries; these systems are also becoming seasonal refuges for migratory birds, including the piscivorous American white pelican ( Pelecanus erythrorhynchos ). We (1) investigated the proportion of cutthroat trout ( Oncorhynchus clarkii utah ) and other species consumed by pelicans, (2) compared whether pelicans have an adverse effect on cutthroat trout spawning movement, and (3) determined the importance of pelican predation relative to other sources of fish mortality in Strawberry Reservoir, Utah, USA. Pelican diet samples consisted of >85% Utah sucker ( Catostomus ardens ), 6% Utah chub ( Gila atraria ), and 3% cutthroat trout. Based on bioenergetics, we estimated that pelicans consumed 384–3020 individual cutthroat trout (0.17%–1.3% of population), in contrast to 14 166–27 196 nongame sucker and chub. Bird-related mortality rate ranged from 1% to 6% for stocked, PIT (passive integrated transponder)-tagged adult cutthroat trout and from 4% to 16% for subadult cutthroat trout. Based on these results, any management action taken to control pelican predation would need to be weighed against the benefits of nongame fish removal and the protected status of pelicans.

Utah↗

USGS2021

Relationship of trout growth to frequent electrofishing and diet collection in a headwater stream

Research on fishes sometimes requires that individual fish be captured and subjected to invasive procedures multiple times over a relatively short time span. Electrofishing is one of the most common techniques used to capture fish, and it is known to cause injury to fish under certain circumstances. We evaluated the relationship of growth rates in Columbia River Redband Trout Oncorhynchus mykiss gairdneri to the number of times that they were captured via electrofishing and gastrically lavaged during the summer of 2018 in a mountainous, headwater stream. We captured fish between two and seven times over the course of 86 d using continuous (smooth) DC backpack electrofishing. We observed no relationship between the growth rate of Columbia River Redband Trout and the number of times that they were captured or gastrically lavaged. Although these findings contrast with hatchery electrofishing experiments, they may represent the greater resiliency of wild fish. It appears that researchers can use electrofishing and gastric lavage in cold waters at least once per month, and potentially up to twice per month, without greatly affecting the growth of wild Columbia River Redband Trout.

Montana↗

USGS2021

Predicting thermal responses of an Arctic lake to whole-lake warming manipulation

We investigated how lake thermal processes responded to whole lake warming manipulation in an arctic lake through observations and numerical modeling. The warming manipulation was conducted by artificially heating the epilimnion as a proxy for climate warming. We performed numerical modeling with an improved lake scheme based on the Community Land Model (CLM). We simulated a control run (CTL) without warming and a warming manipulation simulation (WARM). Results indicated WARM accurately captured observed temperatures where water stratification was extended in time, and water stability was strengthened. Two additional sensitivity tests with different warming onset dates and of the same warming duration showed that earlier warming onsets are predicted to make the water column more stable and less easily mixed relative to a later onset of warming. The results provide a more complete understanding of lake thermal processes in arctic freshwater lake systems and how they will respond to predicted future warming.

Alaska↗

USGS2021

Understanding the effects of climate change via disturbance on pristine arctic lakes — Multitrophic level response and recovery to a 12-yr, low-level fertilization experiment

Effects of climate change-driven disturbance on lake ecosystems can be subtle; indirect effects include increased nutrient loading that could impact ecosystem function. We designed a low-level fertilization experiment to mimic persistent, climate change-driven disturbances (deeper thaw, greater weathering, or thermokarst failure) delivering nutrients to arctic lakes. We measured responses of pelagic trophic levels over 12 yr in a fertilized deep lake with fish and a shallow fishless lake, compared to paired reference lakes, and monitored recovery for 6 yr. Relative to prefertilization in the deep lake, we observed a maximum pelagic response in chl a (+201%), dissolved oxygen (DO, −43%), and zooplankton biomass (+88%) during the fertilization period (2001–2012). Other responses to fertilization, such as water transparency and fish relative abundance, were delayed, but both ultimately declined. Phyto- and zooplankton biomass and community composition shifted with fertilization. The effects of fertilization were less pronounced in the paired shallow lakes, because of a natural thermokarst failure likely impacting the reference lake. In the deep lake there was (a) moderate resistance to change in ecosystem functions at all trophic levels, (b) eventual responses were often nonlinear, and (c) postfertilization recovery (return) times were most rapid at the base of the food web (2–4 yr) while higher trophic levels failed to recover after 6 yr. The timing and magnitude of responses to fertilization in these arctic lakes were similar to responses in other lakes, suggesting indirect effects of climate change that modify nutrient inputs may affect many lakes in the future.

Alaska↗

USGS2021

Trophic niches of native and nonnative fishes along a river-reservoir continuum

Instream barriers can constrain dispersal of nonnative fishes, creating opportunities to test their impact on native communities above and below these barriers. Deposition of sediments in a river inflow to Lake Powell, USA resulted in creation of a large waterfall prohibiting upstream movement of fishes from the reservoir allowing us to evaluate the trophic niche of fishes above and below this barrier. We expected niche overlap among native and nonnative species would increase in local assemblages downstream of the barrier where nonnative fish diversity and abundance were higher. Fishes upstream of the barrier had more distinct isotopic niches and species exhibited a wider range in δ 15 N relative to downstream. In the reservoir, species were more constrained in δ 15 N and differed more in δ 13 C, representing a shorter, wider food web. Differences in energetic pathways and resource availability among habitats likely contributed to differences in isotopic niches. Endangered Razorback Sucker ( Xyrauchen texanus ) aggregate at some reservoir inflows in the Colorado River basin, and this is where we found the highest niche overlap among species. Whether isotopic niche overlap among adult native and nonnative species has negative consequences is unclear, because data on resource availability and use are lacking; however, these observations do indicate the potential for competition. Still, the impacts of diet overlap among trophic generalists, such as Razorback Sucker, are likely low, particularly in habitats with diverse and abundant food bases such as river-reservoir inflows.

Utah↗

USGS2021

Exploring the contemporary relationship between predator and prey in a significant, reintroduced Lahontan Cutthroat Trout population

Lahontan Cutthroat Trout (LCT) Oncorhynchus clarkii henshawi have experienced some of the most marked reductions in abundance and distribution among Cutthroat Trout subspecies. The population of LCT in Pyramid Lake, Nevada has returned from the brink of extirpation, and although it is highly managed via stocking, the population is thriving and has recently started to reproduce naturally. Our objectives were to determine (1) whether predator and prey remain tightly coupled, (2) whether LCT are food limited, and (3) the status of the LCT population with regard to the potential prey-based contemporary carrying capacity. We used a multifaceted approach, including intensive field sampling of fish, bioenergetics modeling, cohort reconstruction, and comparisons of prey availability to consumption. We estimated that the average population of LCT in Pyramid Lake is 1.2 million, average annual stocking is 650,000, and the number of fish angled ranges from 5,000 to 14,000 per year, with a 90% release rate. Driven by seasonal and size variation in consumption, individual annual consumption by LCT varied from 667 to 992 g/year for small LCT (200–400 mm TL) and from 2,388 to 3,057 g/year for large LCT (>400 mm TL). Lahontan Cutthroat Trout are consuming, on average, 14–63% of the standing crop of Tui Chub Siphateles bicolor annually, indicating that LCT are currently not exceeding their prey-based carrying capacity. The LCT in Pyramid Lake remain tightly coupled to their primary native prey, Tui Chub, despite considerable changes to the ecosystem; therefore, managing for a robust population of LCT translates largely to managing for forage fish. This supply-versus-demand issue is of particular concern for Pyramid Lake given that the density of Tui Chub may be declining concordant with declining lake elevation. Given the conservation importance of this LCT population, careful monitoring is critical; however, “predation inertia” indicates that effective short-term management in response to fluctuations in forage fishes is likely possible.

Nevada↗

USGS2021

Investigating the morphological and genetic divergence of arctic char (Salvelinus alpinus) populations in lakes of arctic Alaska

Polymorphism facilitates coexistence of divergent morphs (e.g., phenotypes) of the same species by minimizing intraspecific competition, especially when resources are limiting. Arctic char ( Salvelinus sp.) are a Holarctic fish often forming morphologically, and sometimes genetically, divergent morphs. In this study, we assessed the morphological and genetic diversity and divergence of 263 individuals from seven populations of arctic char with varying length-frequency distributions across two distinct groups of lakes in northern Alaska. Despite close geographic proximity, each lake group occurs on landscapes with different glacial ages and surface water connectivity, and thus was likely colonized by fishes at different times. Across lakes, a continuum of physical (e.g., lake area, maximum depth) and biological characteristics (e.g., primary productivity, fish density) exists, likely contributing to characteristics of present-day char populations. Although some lakes exhibit bimodal size distributions, using model-based clustering of morphometric traits corrected for allometry, we did not detect morphological differences within and across char populations. Genomic analyses using 15,934 SNPs obtained from genotyping by sequencing demonstrated differences among lake groups related to historical biogeography, but within lake groups and within individual lakes, genetic differentiation was not related to total body length. We used PERMANOVA to identify environmental and biological factors related to observed char size structure. Significant predictors included water transparency (i.e., a primary productivity proxy), char density (fish·ha -1 ), and lake group. Larger char occurred in lakes with greater primary production and lower char densities, suggesting less intraspecific competition and resource limitation. Thus, char populations in more productive and connected lakes may prove more stable to environmental changes, relative to food-limited and closed lakes, if lake productivity increases concomitantly. Our findings provide some of the first descriptions of genomic characteristics of char populations in arctic Alaska, and offer important consideration for the persistence of these populations for subsistence and conservation.

Alaska↗

USGS2021

Effects of a diatom ecosystem engineer (Didymosphenia geminata) on stream food webs: Implications for native fishes

Stream habitat changes affecting primary consumers often indirectly impact secondary consumers such as fishes. Blooms of the benthic algae Didymosphenia geminata (Didymo) are known to affect stream macroinvertebrates, but the potential indirect trophic impacts on fish consumers are poorly understood. In streams of the Kootenai River basin, we quantified the diet, condition, and growth rate of species of trout, char, and sculpin. In 2018, macroinvertebrate taxa composition was different between a stream with Didymo and a stream without, but trout diets, energy demand, and growth rates were similar. Trout abundance was higher in the stream with Didymo, but the amount of drifting invertebrates was higher in the stream without. In 2019, we surveyed 28 streams with a gradient of coverage. Didymo abundance was correlated only with the percentage of aquatic invertebrates in trout diets and was not related to diets of char or sculpin or condition of any species. Thus, we found no evidence for a trophic link between Didymo blooms and the condition or growth of trout, char, or sculpin in mountainous headwater streams.

Alberta, British Columbia, Idaho, Montana↗

USGS2021

An empirically based simulation model to inform flow management for endangered species conservation

Increasing water demand, water development, and ongoing climate change have driven extensive changes to the hydrology, geomorphology and biology of arid-land rivers globally, driving an increasing need to understand how annual hydrologic conditions affect the distribution and abundance of imperiled desert fish populations. We analyzed the relationship between annual hydrologic conditions and the endangered Rio Grande silvery minnow ( Hybognathus amarus ) in the Middle Rio Grande, New Mexico, USA, using hurdle models to predict both presence and density as a function of integrated annual hydrologic metrics. Both presence and density were positively related to spring high flow magnitude and duration and negatively related to summer drying, as indicated by an integrated flow metric. Simulations suggest hydrologic conditions near the wettest observed in the data set would be required to meet recovery goals in a single year in all reaches. We demonstrate how the models developed herein can be used to examine alternative water management strategies, including strategies that may currently be socially and logistically infeasible to implement, to identify strategies minimizing trade-offs between conservation and other management goals.

New Mexico↗

USGS2020

Effects of increased temperature on arctic slimy sculpin Cottus cognatus is mediated by food availability: Implications for climate change

Lakes are vulnerable to climate change, and warming rates in the Arctic are faster than anywhere on Earth. Fishes are sensitive to changing temperatures, which directly control physiological processes. Food availability should partly dictate responses to climate change because energetic demands change with temperature, but few studies have simultaneously examined temperature and food availability. We used a fully factorial experiment to test effects of food availability and temperature (7.6, 12.7, and 17.4°C; 50 days) on growth, consumption, respiration, and excretion, and effects of temperature (12 and 19.3°C; 27 days) on habitat use and growth of a common, but understudied, mid-level consumer, slimy sculpin Cottus cognatus , in arctic lakes. We also used bioenergetics modelling to predict consumptive demand under future warming scenarios. Growth rates were 3.4× higher at 12.7°C in high food compared to low food treatments, but the magnitude of differences depended on temperature. Within low food treatments, there was no statistical difference in growth rates among temperatures, suggesting food limitation. Consumption, respiration, and nitrogen excretion increased with temperature independent of food availability. Lower growth rates coincided with lower phosphorus excretion at the highest temperature, suggesting that fish selectively retained phosphorus at high temperatures and low food. In habitat choice experiments, fish were more likely to use the 12°C side of the tank, closely matching their optimal temperature. We predicted a 9% increase in consumption is required to maintain observed growth under a 4°C warming scenario. These results highlight considering changes in food resources and other associated indirect effects (e.g. excretion) that accompany changing temperatures with climate change. Depending on how food webs respond to warming, fish may cope with predicted warming if density-dependent feedback maintains population sizes.

Alaska↗

USGS2020

Resilient and rapid recovery of native trout after removal of a non-native trout

While the importance of reducing impacts of non-native species is increasingly recognized in conservation, the feasibility of such actions is highly dependent upon several key uncertainties including stage of invasion, size of the ecosystem being restored, and magnitude of the restoration activity. Here, we present results of a multi-year, non-native brown trout ( Salmo trutta ) removal and native Bonneville cutthroat trout ( Oncorhynchus clarkii utah ) response to this removal in a small tributary in the Intermountain West, United States. We monitored trout for 10 years prior to the onset of eradication efforts, which included 2 years of mechanical removal followed by 2 years of chemical treatment. Cutthroat trout were then seeded with low numbers of both eggs and juvenile trout. We monitored demographics and estimated population growth rates and carrying capacities for cutthroat trout from long-term depletion estimate data, assuming logistic population growth. Following brown trout eradication and initial seeding efforts, cutthroat trout in this tributary have responded rapidly and have approached their estimated carrying capacity within 6 years. Population projections suggest a 95% probability that cutthroat trout will be at or above 90% of their carrying capacity within 10 years of the eradication of brown trout. Additionally, at least four age-classes are present including adults large enough to satisfy angling demand. These results demonstrate native trout species have substantial capacity to rapidly recover following removal of invasive species in otherwise minimally altered habitats. While tributaries such as like this study location are likely limited in extent individually, collectively they may serve such as source populations for larger connected systems. In such cases, these source populations may provide additional conservation potential through biotic resistance.

Utah↗

USGS2020

Trophic structure of apex fish communities in closed versus leaky lakes of arctic Alaska

Despite low species diversity and primary production, trophic structure (e.g., top predator species, predator size) is surprisingly variable among Arctic lakes. We investigated trophic structure in lakes of arctic Alaska containing arctic char Salvelinus alpinus using stomach contents and stable isotope ratios in two geographically-close but hydrologically-distinct lake clusters to investigate how these fish may interact and compete for limited food resources. Aside from different lake connectivity patterns (‘leaky’ versus ‘closed’), differing fish communities (up to five versus only two species) between lake clusters allowed us to test trophic hypotheses including: (1) arctic char are more piscivorous, and thereby grow larger and obtain higher trophic positions, in the presence of other fish species; and, (2) between arctic char size classes, resource polymorphism is more prominent, and thereby trophic niches are narrower and overlap less, in the absence of other predators. Regardless of lake cluster, we observed little direct evidence of arctic char consuming other fishes, but char were larger (mean TL = 468 vs 264 mm) and trophic position was higher (mean TP = 4.0 vs 3.8 for large char) in lakes with other fishes. Further, char demonstrated less intraspecific overlap when other predators were present whereas niche overlap was up to 100% in closed, char only lakes. As hydrologic characteristics (e.g., lake connectivity, water temperatures) will change across the Arctic owing to climate change, our results provide insight regarding potential concomitant changes to fish interactions and increase our understanding of lake trophic structure to guide management and conservation goals.

Alaska↗

USGS2020

A multifaceted reconstruction of the population structure and life history expressions of a remnant metapopulation of Bonneville Cutthroat Trout: Implications for maintaining intermittent connectivity

Fishes that evolutionarily demonstrated a fluvial life history expression and migrated to spawning and rearing habitat by using lotic corridors are increasingly impacted by fragmentation. The overall goal of this study was to identify the contemporary importance of main-stem connectivity and tributaries for maintaining life history expression, population structure, and viability of a large metapopulation of Bonneville Cutthroat Trout (BCT) Oncorhynchus clarkii utah persisting in the highly fragmented Weber River, Utah. We used a multifaceted approach, including active sampling, mark–recapture, passive PIT tag detection, otolith microchemistry, and genetics. We collected BCT in all tributaries and the main stem, encountering age-0 fish in three tributaries, indicating successful reproduction. In tributaries, the size structure was bimodal and consisted of smaller fish that were classified as resident and larger fish that were deemed to be fluvial, whereas all sizes and ages (age ≥ 1) were present in the main stem. We identified up to eight age-classes; tributaries were dominated by ages 2 and 8, and the main stem was dominated by ages 2, 5, 6, and 7. Tributary BCT had lower growth rates than BCT in the main stem. We observed a surprising degree of fluvial life history expression, and fish also demonstrated very complex movement patterns across their life span. Average apparent survival (33%) was within the range estimated in similar studies for BCT, and the resight rate was best explained by angler management regulations. The fact that BCT in the Weber River and tributaries still reproduce successfully in most years and are still able to grow into large, fluvial fish suggests that connectivity must be occasionally available despite considerable fragmentation. Therefore, this metapopulation may need little further human intervention if barriers to fish passage can be removed, thereby improving connectivity, and it represents a high-priority metapopulation for conservation, thus highlighting the utility of our approach.

Utah↗