Geology topics

Peter P. Marra

Publications and source records attributed to Peter P. Marra.

17 recordsLinked to original sources

USGS2025

Power source, data retrieval method, and attachment type affect success of dorsally mounted tracking tag deployments in 37 species of shorebirds

Animal-borne trackers are commonly used to study bird movements, including in long-distance migrants such as shorebirds. Selecting a tracker and attachment method can be daunting, and methodological advancements often have been made by trial and error and conveyed by word of mouth. We synthesized tracking outcomes across 2745 dorsally mounted trackers on 37 shorebird species around the world. We evaluated how attachment method, power source, data retrieval method, relative tracker mass, and biological traits affected success, where success was defined as whether or not each tag deployment reached its expected tracking duration (i.e. all aspects succeeded for the intended duration of the study: attachment, tracking, data acquisition, and bird survival). We conducted separate analyses for tag deployments with remote data retrieval (‘remote-upload tag deployments') and those that archived data and had to be recovered (‘archival tag deployments'). Among remote-upload tag deployments, those that were a lighter mass relative to the bird, were beyond their first year of production, transmitted data via satellite, or were attached with a leg-loop harness were most often successful at reaching their expected tracking duration. Archival tag deployments were most successful when applied at breeding areas, or when applied to males in any season. Remote-upload tag deployments with solar power, satellite data retrieval, or leg-loop harnesses continued tracking for longer than those with battery power, other types of data retrieval, or glue attachments. However, the majority of tag deployments failed to reach their expected tracking duration (71% of remote-upload, 83% of archival), which could have been due to tracker failure, attachment failure, or bird mortality. Our findings highlight that many tag deployments may fail to meet the goals of a study if tracking duration is crucial. Using our results, we provide guidelines for selecting a tracker and attachment to improve success at meeting study goals.

Journal of Avian Biology↗

USGS2025

Delineating ecologically-distinct groups for annual cycle management of a declining shorebird

1. Patterns of migratory connectivity are increasingly used to understand and manage threats throughout the annual cycle of migratory species. Strong migratory connectivity refers to when individuals from different populations remain spatially separated across the annual cycle, which may expose populations to unique sets of threats and conditions that cause differential population trends. However, the populations or groups used for species’ management are often defined a priori based on expert knowledge and/or management units, which may mask important population segregation and obscure differential population trends and their drivers. 2. We compared three approaches to defining management groups of a declining shorebird, the long-billed curlew ( Numenius americanus ), for annual cycle management: by expert-opinion, according to management flyways, and with unsupervised clustering of satellite tracking data that maximizes the strength of migratory connectivity. 3. Despite the curlews having a continuous breeding range and a pattern of parallel migration, all three approaches identified groups with different population trends, movement behaviours and habitat selection across the annual cycle, suggesting these are meaningful ecological groups. The expert and clustering approaches resulted in similar group structure, strong estimates of migratory connectivity (measured as MC = 0.64 across seasons), movement behaviour and habitat selection; however, the expert approach identified an additional divide between the easternmost grouping, which revealed strongly negative population trends in the group occupying the Chihuahuan desert during the stationary nonbreeding season. In contrast, the flyway delineation resulted in weaker estimates of migratory connectivity, marginal differences in population trends and less between-group differences in movement behaviour and habitat selection. 4. Synthesis and applications . Using measurements of migratory connectivity in concert with expert opinion can define ecologically distinct groups for wildlife management that differ in the environmental conditions they experience across seasons of the annual cycle, which is a key component for understanding and reversing declines of migratory species.

Journal of Applied Ecology↗

USGS2023

Springing forward: Migrating songbirds catch up with the start of spring in North America

In temperate regions, the annual pattern of spring onset can be envisioned as a ‘green wave’ of emerging vegetation that moves across continents from low to high latitudes, signifying increasing food availability for consumers. Many herbivorous migrants ‘surf’ such resource waves, timing their movements to exploit peak vegetation resources in early spring. Although less well studied at the individual level, secondary consumers such as insectivorous songbirds can track vegetation phenology during migration as well. We hypothesized that four species of ground-foraging songbirds in eastern North America—two warblers and two thrushes—time their spring migrations to coincide with later phases of vegetation phenology, corresponding to increased arthropod prey, and predicted they would match their migration rate to the green wave but trail behind it rather than surfing its leading edge. We further hypothesized that the rate at which spring onset progresses across the continent influences bird migration rates, such that individuals adjust migration timing within North America to phenological conditions they experience en route . To test our hypotheses, we used a continent-wide automated radio telemetry network to track individual songbirds on spring migration between the U.S. Gulf Coast region and northern locations closer to their breeding grounds. We measured vegetation phenology using two metrics of spring onset, the spring index first leaf date and the normalized difference vegetation index (NDVI), then calculated the rate and timing of spring onset relative to bird detections. All individuals arrived in the southeastern United States well after local spring onset. Counter to our expectations, we found that songbirds exhibited a ‘catching up’ pattern: Individuals migrated faster than the green wave of spring onset, effectively closing in on the start of spring as they approached breeding areas. While surfing of resource waves is a well-documented migration strategy for herbivorous waterfowl and ungulates, individual songbirds in our study migrated faster than the green wave and increasingly caught up to its leading edge en route . Consequently, songbirds experience a range of vegetation phenophases while migrating through North America, suggesting flexibility in their capacity to exploit variable resources in spring.

Journal of Animal Ecology↗

USGS2022

Integrating data types to estimate spatial patterns of avian migration across the Western Hemisphere

For many avian species, spatial migration patterns remain largely undescribed, especially across hemispheric extents. Recent advancements in tracking technologies and high-resolution species distribution models (i.e., eBird Status and Trends products) provide new insights into migratory bird movements and offer a promising opportunity for integrating independent data sources to describe avian migration. Here, we present a three-stage modeling framework for estimating spatial patterns of avian migration. First, we integrate tracking and band re-encounter data to quantify migratory connectivity, defined as the relative proportions of individuals migrating between breeding and nonbreeding regions. Next, we use estimated connectivity proportions along with eBird occurrence probabilities to produce probabilistic least-cost path (LCP) indices. In a final step, we use generalized additive mixed models (GAMMs) both to evaluate the ability of LCP indices to accurately predict (i.e., as a covariate) observed locations derived from tracking and band re-encounter datasets versus pseudo-absence locations during migratory periods, and to create a fully integrated (i.e., eBird occurrence, LCP, and tracking/band re-encounter data) spatial prediction index for mapping species-specific seasonal migrations. To illustrate this approach, we apply this framework to describe seasonal migrations of 12 bird species across the Western Hemisphere during pre- and post-breeding migratory periods (i.e., spring and fall, respectively). We found that including LCP indices with eBird occurrence in GAMMs generally improved the ability to accurately predict observed migratory locations, when compared to models with eBird occurrence alone. Using three performance metrics, the eBird + LCP model demonstrated equivalent or superior fit relative to the eBird-only model for 22 of 24 species-season GAMMs. In particular, the integrated index filled in spatial gaps for species with over-water movements and those that migrated over land where there were few eBird sightings, and thus, low predictive ability of eBird occurrence probabilities (e.g., Amazonian rainforest in South America). This methodology of combining individual-based seasonal movement data with temporally dynamic species distribution models provides a comprehensive approach for integrating multiple data types to describe broad-scale spatial patterns of animal movement. Further development and customization of this approach will continue to advance knowledge about the full annual cycle and conservation of migratory birds.

Ecological Applications↗

USGS2021

Revealing migratory path, important stopovers and non-breeding areas of a boreal songbird in steep decline

The Olive-sided Flycatcher (Contopus cooperi) is a steeply declining aerial insectivore with one of the longest migrations of any North American passerine. We deployed light-level geolocators and archival GPS tags on breeders in boreal Alaska to determine migratory routes, important stopovers and non-breeding locations. Data from 16 individuals revealed a median 23,555 km annual journey (range: 19,387, 27,292 km) over 95 days (range: 83, 139 days) with wintering occurring in three regions of South America (NW Colombia/Ecuador, central Peru and W Brazil/S Peru). We developed a new method to identify “Important Stopovers” by quantifying intensity of use (a function of bird numbers and stop durations) along migratory routes. We identified 13 Important Stopovers that accounted for ~66% of the annual migratory period, suggestive of refueling activities. Some sites coincided with key areas previously identified for other Neotropi- cal-Nearctic migrants. Percent land “protected” at Impor- tant Stopovers, as defined by IUCN, ranged from 3.8% to 49.3% (mean [95% CI]: 17.3% [9.6, 25.0]). Total migration speed did not differ by season (median: 255 km day-1, range: 182, 295km day-1), despite greater spring travel dis- tances. Birds with longer non-breeding periods, however, migrated north faster. Climate-driven mismatches in migratory timing may be less of a concern for western than for eastern flycatcher populations, given recent con- generic analyses (C. sordidulus, C. virens). However, accel- erated high-latitude changes, may nonetheless impact boreal breeders.

Alaska↗

USGS2021

The reuse of avian samples: Opportunities, pitfalls and a solution

Tissue samples are frequently collected to study various aspects of avian biology, but in many cases these samples are not used in their entirety and are stored by the collector. The already collected samples provide a largely overlooked opportunity because they can be used by different researchers in different biological fields. Broad reuse of samples could result in multispecies or large-scale studies, interdisciplinary collaborations, and the generation of new ideas, thereby increasing the quality and impact of research. Sample reuse could also reduce the number of new samples needed for a study, which is especially pertinent to endangered species where sample collection is necessarily limited. Importantly, reusing samples may be mutually beneficial for both the researchers providing samples and those reusing them. Here, we identify the benefits of sample reuse, describe currently available sources of already collected samples and their limitations, and highlight the wide range of potential applications in a single research field – avian isotopic ecology. To facilitate the reuse of avian samples worldwide and across research fields, we introduce the AviSample Network metadata repository. The main aims of this metadata repository are to collate and provide access to descriptions of available avian tissue samples. We contend that the creation of the AviSample Network metadata repository will provide the opportunity for new collaborations and studies. Moreover, we believe that this will help create research connections between ornithologists across the globe and encourage sample reuse in other fields.

Ibis↗

USGS2020

Ecological insights from three decades of animal movement tracking across a changing Arctic

The Arctic is entering a new ecological state, with alarming consequences for humanity. Animal-borne sensors offer a window into these changes. Although substantial animal tracking data from the Arctic and subarctic exist, most are difficult to discover and access. Here, we present the new Arctic Animal Movement Archive (AAMA), a growing collection of more than 200 standardized terrestrial and marine animal tracking studies from 1991 to the present. The AAMA supports public data discovery, preserves fundamental baseline data for the future, and facilitates efficient, collaborative data analysis. With AAMA-based case studies, we document climatic influences on the migration phenology of eagles, geographic differences in the adaptive response of caribou reproductive phenology to climate change, and species-specific changes in terrestrial mammal movement rates in response to increasing temperature.

Science↗

USGS2019

Weak effects of geolocators on small birds: a meta‐analysis controlled for phylogeny and publication bias

Currently, the deployment of tracking devices is one of the most frequently used approaches to study movement ecology of birds. Recent miniaturisation of light‐level geolocators enabled studying small bird species whose migratory patterns were widely unknown. However, geolocators may reduce vital rates in tagged birds and may bias obtained movement data. There is a need for a thorough assessment of the potential tag effects on small birds, as previous meta‐analyses did not evaluate unpublished data and impact of multiple life‐history traits, focused mainly on large species and the number of published studies tagging small birds has increased substantially. We quantitatively reviewed 549 records extracted from 74 published and 48 unpublished studies on over 7,800 tagged and 17,800 control individuals to examine the effects of geolocator tagging on small bird species (body mass <100 g). We calculated the effect of tagging on apparent survival, condition, phenology and breeding performance and identified the most important predictors of the magnitude of effect sizes. Even though the effects were not statistically significant in phylogenetically controlled models, we found a weak negative impact of geolocators on apparent survival. The negative effect on apparent survival was stronger with increasing relative load of the device and with geolocators attached using elastic harnesses. Moreover, tagging effects were stronger in smaller species. In conclusion, we found a weak effect on apparent survival of tagged birds and managed to pinpoint key aspects and drivers of tagging effects. We provide recommendations for establishing matched control group for proper effect size assessment in future studies and outline various aspects of tagging that need further investigation. Finally, our results encourage further use of geolocators on small bird species but the ethical aspects and scientific benefits should always be considered.

Journal of Animal Ecology↗

USGS2019

Decline of the North American avifauna

Species extinctions have defined the global biodiversity crisis, but extinction begins with loss in abundance of organisms that can result in extreme compositional and functional changes of ecosystems. Using multiple and independent monitoring networks, we report major population losses across much of the North American avifauna, including in once common species and from nearly every biome. Integration of trend and population size estimates indicates a net loss approaching three billion birds, or 29% of 1970 abundance. Continent-wide weather radar also reveals a comparable decline in biomass passage of migrating birds over a recent 10-year period. Our estimates of abundance and biodiversity loss signals an urgent need to address ongoing threats, in order to avert future avifaunal collapse and associated loss of ecosystem integrity and function.

Science↗

USGS2018

Organochlorine chemical residues in Northern Cardinal (Cardinalis cardinalis) eggs from Greater Washington, DC USA

Northern Cardinal eggs from six neighborhoods near Washington DC were analyzed for organochlorine pesticides and PCBs. All compounds were detected more frequently and at higher concentrations in more heavily urbanized neighborhoods. DDT (mostly as p,pʹ -DDE) was detected in all neighborhoods. p,pʹ -DDT was typically 0.5‒16 ng/g (ww) in most suburban neighborhoods but was not detected (< 0.1 ng/g) in more rural areas; however, p,pʹ -DDT was 127‒1130 ng/g in eggs from two suburban Maryland nests and comprised 65.7% of total p,pʹ -DDT isomers in the most contaminated sample, indicating recent exposure to un-weathered DDT. Total chlordane (sum of 5 compounds) was 2‒70 ng/g; concentrations were greatest in older suburban neighborhoods. Total PCB (sum of detected congeners) was < 5‒21 ng/g. Congener patterns were similar in all neighborhoods and resembled those typical of weathered mixtures. Results indicate that wildlife remains exposed to low concentrations of legacy contaminants in suburban neighborhoods and that cardinal eggs can be used to monitor localized contamination.

District of Columbia, Maryland↗

USGS2017

Full annual cycle climate change vulnerability assessment for migratory birds

Climate change is a serious challenge faced by all plant and animal species. Climate change vulnerability assessments (CCVAs) are one method to assess risk and are increasingly used as a tool to inform management plans. Migratory animals move across regions and continents during their annual cycles where they are exposed to diverse climatic conditions. Climate change during any period and in any region of the annual cycle could influence survival, reproduction, or the cues used to optimize timing of migration. Therefore, CCVAs for migratory animals best estimate risk when they include climate exposure during the entire annual cycle. We developed a CCVA incorporating the full annual cycle and applied this method to 46 species of migratory birds breeding in the Upper Midwest and Great Lakes (UMGL) region of the United States. Our methodology included background risk, climate change exposure × climate sensitivity, adaptive capacity to climate change, and indirect effects of climate change. We compiled information about migratory connectivity between breeding and stationary non-breeding areas using literature searches and U.S. Geological Survey banding and re-encounter data. Climate change exposure (temperature and moisture) was assessed using UMGL breeding season climate and winter climate from non-breeding regions for each species. Where possible, we focused on non-breeding regions known to be linked through migratory connectivity. We ranked 10 species as highly vulnerable to climate change and two as having low vulnerability. The remaining 34 species were ranked as moderately vulnerable. In general, including non-breeding data provided more robust results that were highly individualistic by species. Two species were found to be highly vulnerable throughout their annual cycle. Projected drying will have the greatest effect during the non-breeding season for species overwintering in Mexico and the Caribbean. Projected temperature increases will have the greatest effect during the breeding season in UMGL as well as during the non-breeding season for species overwintering in South America. We provide a model for adaptive management of migratory animals in the face of projected climate change, including identification of priority species, research needs, and regions within non-breeding ranges for potential conservation partnerships.

Ecological Applications↗

USGS2017

How do en route events around the Gulf of Mexico influence landbird populations

Habitats around the Gulf of Mexico (GOM) provide critical resources for Nearctic–Neotropical migratory landbirds, the majority of which travel across or around the GOM every spring and fall as they migrate between temperate breeding grounds in North America and tropical wintering grounds in the Caribbean and Central and South America. At the same time, ecosystems in the GOM are changing rapidly, with unknown consequences for migratory landbird populations, many of which are experiencing population declines. In general, the extent to which events encountered en route limit migratory bird populations is not well understood. At the same time, information from weather surveillance radar, stable isotopes, tracking, eBird, and genetic datasets is increasingly available to address many of the unanswered questions about bird populations that migrate through stopover and airspace habitats in the GOM. We review the state of the science and identify key research needs to understand the impacts of en route events around the GOM region on populations of intercontinental landbird migrants that breed in North America, including: (1) distribution, timing, and habitat associations; (2) habitat characteristics and quality; (3) migratory connectivity; and (4) threats to and current conservation status of airspace and stopover habitats. Finally, we also call for the development of unified and comprehensive long-term monitoring guidelines and international partnerships to advance our understanding of the role of habitats around the GOM in supporting migratory landbird populations moving between temperate breeding grounds and wintering grounds in Mexico, Central and South America, and the Caribbean.

The Condor↗

USGS2015

The rapid return of marine-derived nutrients to a freshwater food web following dam removal

Dam removal is increasingly being recognized as a viable river restoration action. Although the main beneficiaries of restored connectivity are often migratory fish populations, little is known regarding recovery of other parts of the freshwater food web, particularly terrestrial components. We measured stable isotopes in key components to the freshwater food web: salmon, freshwater macroinvertebrates and a river specialist bird, American dipper ( Cinclus mexicanus ), before and after removal of the Elwha Dam, WA, USA. Less than a year after dam removal, salmon returned to the system and released marine-derived nutrients (MDN). In that same year we documented an increase in stable-nitrogen and carbon isotope ratios in American dippers. These results indicate that MDN from anadromous fish, an important nutrient subsidy that crosses the aquatic–terrestrial boundary, can return rapidly to food webs after dams are removed which is an important component of ecosystem recovery.

Washington↗

USGS2014

Estimating migratory connectivity of birds when re-encounter probabilities are heterogeneous

Understanding the biology and conducting effective conservation of migratory species requires an understanding of migratory connectivity – the geographic linkages of populations between stages of the annual cycle. Unfortunately, for most species, we are lacking such information. The North American Bird Banding Laboratory (BBL) houses an extensive database of marking, recaptures and recoveries, and such data could provide migratory connectivity information for many species. To date, however, few species have been analyzed for migratory connectivity largely because heterogeneous re-encounter probabilities make interpretation problematic. We accounted for regional variation in re-encounter probabilities by borrowing information across species and by using effort covariates on recapture and recovery probabilities in a multistate capture–recapture and recovery model. The effort covariates were derived from recaptures and recoveries of species within the same regions. We estimated the migratory connectivity for three tern species breeding in North America and over-wintering in the tropics, common (Sterna hirundo), roseate (Sterna dougallii), and Caspian terns (Hydroprogne caspia). For western breeding terns, model-derived estimates of migratory connectivity differed considerably from those derived directly from the proportions of re-encounters. Conversely, for eastern breeding terns, estimates were merely refined by the inclusion of re-encounter probabilities. In general, eastern breeding terns were strongly connected to eastern South America, and western breeding terns were strongly linked to the more western parts of the nonbreeding range under both models. Through simulation, we found this approach is likely useful for many species in the BBL database, although precision improved with higher re-encounter probabilities and stronger migratory connectivity. We describe an approach to deal with the inherent biases in BBL banding and re-encounter data to demonstrate that this large dataset is a valuable source of information about the migratory connectivity of the birds of North America.

Ecology and Evolution↗

USGS2012

Using stable isotopes to test for trophic niche partitioning: a case study with stream salamanders and fish

1.&ensp;Stream salamanders and fish often co-occur even though fish prey on and outcompete salamanders. However, the mechanisms that allow palatable salamanders to coexist with fish are unknown. 2.&ensp;We tested mechanisms in the field that promote coexistence between Idaho giant salamanders ( Dicamptodon aterrimus ) and stream salmonid fishes in headwater streams. Previous research in this system indicated that salamander dispersal did not promote coexistence with fish. We tested the hypothesis that D. aterrimus shift their diet when they occur with fish, facilitating coexistence through local niche partitioning. 3.&ensp;We used nitrogen and carbon stable isotopes to describe the trophic niche of D. aterrimus and fish in three co-occurring populations of salamanders and fish and three populations of salamanders without fish. We used two approaches to quantify trophic niche partitioning with stable isotopes: 95% kernel density estimators and isotopic mixing models. 4.&ensp;We found that salamanders and fish were generalists that consumed aquatic invertebrates primarily, but both species were also cannibalistic and predatory on one another. We also found no support for trophic niche partitioning as a coexistence mechanism because there were no differences in the trophic niche metrics among salamander populations with and without fish. 5.&ensp;Although we did not identify mechanisms that facilitate salamander and fish coexistence, our empirical data and use of novel approaches to describe the trophic niche did yield important insights on the role of predator–prey interactions and cannibalism as alternative coexistence mechanisms. In addition, we found that 95% kernel estimators are a simple and robust method to describe population-level measure of trophic structure.

Freshwater Biology↗

USGS2011

Landscape matrix mediates occupancy dynamics of Neotropical avian insectivores

In addition to patch‐level attributes (i.e., area and isolation), the nature of land cover between habitat patches (the matrix) may drive colonization and extinction dynamics in fragmented landscapes. Despite a long‐standing recognition of matrix effects in fragmented systems, an understanding of the relative impacts of different types of land cover on patterns and dynamics of species occurrence remains limited. We employed multi‐season occupancy models to determine the relative influence of patch area, patch isolation, within‐patch vegetation structure, and landscape matrix on occupancy dynamics of nine Neotropical insectivorous birds in 99 forest patches embedded in four matrix types (agriculture, suburban development, bauxite mining, and forest) in central Jamaica. We found that within‐patch vegetation structure and the matrix type between patches were more important than patch area and patch isolation in determining local colonization and local extinction probabilities, and that the effects of patch area, isolation, and vegetation structure on occupancy dynamics tended to be matrix and species dependent. Across the avian community, the landscape matrix influenced local extinction more than local colonization, indicating that extinction processes, rather than movement, likely drive interspecific differences in occupancy dynamics. These findings lend crucial empirical support to the hypothesis that species occupancy dynamics in fragmented systems may depend greatly upon the landscape context.

Clarendon Parish, Manchester Parish↗

USGS2009

Does a lack of design and repeatability compromise scientific criticism? A Response to Smith et al. (2009)

In a recent paper published in The Auk , Smith et al. (2009) raised serious concerns over an apparent lack of reproducibility in their study of stable hydrogen isotope values (δD f ) in raptor feathers. The authors based their concerns on results obtained from different laboratories to which they submitted original and blind “repeats” over a multiyear period. A regression of the original sample δD versus “repeat” measurements showed an increase in the magnitude of residuals with increasing δD f , especially for values greater than about −80&permil; (Smith et al. 2009: fig. 2). Because of this, the authors “caution against the continued use of δD f for predicting geographic origin, and for addressing important conservation questions” (p. 41) and conclude that “it is counterproductive to move forward [with hydrogen isotopes in avian studies] without first establishing full confidence in the technique that underlies such insights and conservation recommendations” (p. 45). We disagree with these sentiments.

The Auk↗