Geology topics

Perry S. Barboza

Publications and source records attributed to Perry S. Barboza.

13 recordsLinked to original sources

USGS2018

NDVI exhibits mixed success in predicting spatiotemporal variation in caribou summer forage quality and quantity

The satellite‐derived Normalized Difference Vegetation Index (NDVI) is commonly used by researchers and managers to represent ungulate forage conditions in landscapes across the globe, despite limited information about how it compares to empirical measurements of forage quality and quantity. The application of NDVI as a forage metric is particularly appealing for studying migratory caribou ( Rangifer tarandus ) in remote Arctic ecosystems, where field assessments are logistically and financially prohibitive, and climate‐mediated changes in vegetation have been hypothesized to influence population declines. To determine the utility of NDVI for adequately representing caribou forage conditions, we compared NDVI derived from Moderate Resolution Imaging Spectroradiometer (MODIS) satellite imagery to empirical measures of caribou forage biomass, nitrogen, digestible nitrogen, and digestible energy within the summer range of the Central Arctic Caribou Herd on the North Slope of Alaska. Specifically, we determined the strength of forage–NDVI relationships at the start of the growing season and across the summer, assessed the efficacy of NDVI variables for modeling spatiotemporal variation in field measurements of different forage components, and used long‐term MODIS data to estimate temporal changes in forage between 2000 and 2016. We found that NDVI values were weakly correlated with caribou forage quality at the start of the growing season and throughout the summer. Although linear models of forage–NDVI relationships performed poorly, NDVI variables (NDVI and the number of days from when NDVI reached its maximum value) were useful for modeling spatiotemporal variation in empirical measurements of forage components across the growing season, but only when we incorporated nonlinear forage–NDVI relationships and other habitat covariates. Phenological advances in the date of peak NDVI were associated with significant changes in forage conditions, particularly nitrogen, which exhibited earlier seasonal declines. Using long‐term MODIS data, predicted values of forage nitrogen declined between 2000 and 2016, driven by exceedingly low values in 2014 and 2015. Given our results, we caution the application of NDVI as a general (linear) proxy of caribou forage conditions across the growing season, and encourage practitioners to use NDVI variables to model spatiotemporal variation in specific forage conditions from empirical field data, accounting for nonlinear forage–NDVI relationships.

Alaska↗

USGS2018

Monitoring responses to variation in food supply for a migratory waterfowl: American Black Duck (Anas rubripes) in winter

Wintering Black Ducks ( Anas rubripes ) concentrate in wetlands along the Atlantic coast where natural and anthropogenic disturbances have increased over the last 50 years, a period in which the population of Black Ducks has declined. We studied the sensitivity of Black Ducks to perturbations in food supply that often result from disturbances by storms, predators, and people. In the paper, we characterize the responses of captive Black Ducks to shifts in food quality and availability during winter and apply those measures to a comparison of wild birds. Captive ducks that were fed intermittently (3 consecutive days/week) compensated for fasted days to achieve similar body mass and body fat to control birds that were fed every day on both animal- and plant-based diets. However, birds that were fed intermittently expended 15% more energy each day than controls when both groups were fed (536 vs. 464 kJ/kg 0.75 ), which indicates that variable food supply increases the costs of maintenance and thus reduces the number of birds that can be supported on the same resource of food without interruptions to foraging. Egg production was not affected by diet quality provided in spring or by the frequency of feeding during the preceding winter months. Black Ducks lost body fat through winter in captivity and in the wild. Fat stores of birds in New Jersey were greater than those of birds in Maine (13.3 vs. 8.3% of body mass) in January, which reflected the high energy demands of cold temperatures in Maine. Values for ∂ 15 N were greater in Maine than in New Jersey for both red blood cells and plasma, which indicated a consistent diet of marine invertebrates in Maine. Greater isotopic variation in red blood cells indicated that diets were more diverse in New Jersey than in Maine for both ∂ 15 N (9.7 ± 1.1 vs. 11.2 ± 0.4‰) and for ∂ 13 C (− 15.1 ± 2.2 vs. − 13.8 ± 1.4‰). Plasma ∂ 13 C was enriched over red blood cells in wild birds especially those with low fat stores, which suggested birds with low energy stores were shifting diets. Black Ducks can compensate for disturbances in feeding by increasing intakes if they have access to high quality wetlands where they are able to find abundant food. High energy demands at cold temperatures may constrain fat stores and thus the tolerance of feeding disturbances especially at the northern limits of the winter range. We hypothesize that decreasing variation in diet may indicate an increase in vulnerability to disturbance in winter when body fat is low. Recent efforts to assess and improve habitat quality of Black Ducks could be enhanced by monitoring the body composition and diet of birds to assess their vulnerability to disturbances in food supply and energy demands.

Journal of Comparative Physiology B: Biochemical, ↗

USGS2018

The nitrogen window for arctic herbivores: plant phenology and protein gain of migratory caribou (Rangifer tarandus)

Terrestrial plants are often limited by nitrogen (N) in arctic systems, but constraints of N supply on herbivores are typically considered secondary to those of energy. We tested the hypothesis that forage N is more limiting than energy for arctic caribou by collecting key forages (three species of graminoids, three species of woody browse, and one genus of forb) over three summers in the migratory range of the Central Arctic Herd in Alaska from the Brooks Range to the Coastal Plain on the Arctic Ocean. We combined in vitro digestion and detergent extraction to measure fiber, digestible energy, and usable fractions of N in forages ( n = 771). Digestible energy content fell below the minimum threshold value of 9 kJ/g for one single forage group: graminoids, and only beyond 64–75 d from parturition (6 June), whereas all forages fell below the minimum threshold value for digestible N (1% of dry matter) before female caribou would have weaned their calves at 100 d from parturition. The window for digestible N was shortest for browse, which fell below 1% at 30–41 d from parturition, whereas digestible N contents of graminoids were adequate until 46–57 d from parturition. The low quality of browse as a source of N was also apparent from concentrations of available N (i.e., the N not bound to fiber) that were <1% at 72–80 d from parturition. The Coastal Plain may be favored by female caribou because available and digestible concentrations of N are not only greater than those on the Brooks Range, the window of usable N on the Coastal Plain extends the period of protein gain for females and their calves by 17 d. Conversely, inland areas with greater biomass and densities of digestible N than the Coastal Plain may be more favorable for large male caribou that begin gaining protein from spring to breed in autumn. Our study provides evidence that phenological windows for protein gain in caribou are both spatially and temporally dynamic and likely to affect the distribution and growth of the population.

Ecosphere↗

USGS2017

Variation in δ15N and δ13C values of forages for Arctic caribou: Effects of location, phenology and simulated digestion

Rationale The use of stable isotopes for dietary estimates of wildlife assumes that there are consistent differences in isotopic ratios among diet items, and that the differences in these ratios between the diet item and the animal tissues (i.e., fractionation) are predictable. However, variation in isotopic ratios and fractionation of δ 13 C and δ 15 N values among locations, seasons, and forages are poorly described for arctic herbivores especially migratory species such as caribou ( Rangifer tarandus ). Methods We measured the δ 13 C and δ 15 N values of seven species of forage growing along a 200-km transect through the range of the Central Arctic caribou herd on the North Slope of Alaska over 2 years. We compared forages available at the beginning (May; n = 175) and the end ( n = 157) of the growing season (September). Purified enzymes were used to measure N digestibility and to assess isotopic fractionation in response to nutrient digestibility during simulated digestion. Results Values for δ 13 C declined by 1.38 ‰ with increasing latitude across the transect, and increased by 0.44 ‰ from the beginning to the end of the season. The range of values for δ 15 N was greater than that for δ 13 C (13.29 vs 5.60 ‰). Differences in values for δ 13 C between graminoids ( Eriophorum and Carex spp.) and shrubs ( Betula and Salix spp.) were small but δ 15 N values distinguished graminoids (1.87 ± 1.02 ‰) from shrubs (−2.87 ± 2.93 ‰) consistently across season and latitude. However, undigested residues of forages were enriched in 15 N when the digestibility of N was less than 0.67. Conclusions Although δ 15 N values can distinguish plant groups in the diet of arctic herbivores, variation in the digestibility of dietary items may need to be considered in applying fractionation values for 15 N to caribou and other herbivores that select highly digestible items (e.g. forbs) as well as heavily defended plants (e.g. woody browse).

Alaska↗

USGS2015

A genetic discontinuity in moose ( Alces alces ) in Alaska corresponds with fenced transportation infrastructure

The strength and arrangement of movement barriers can impact the connectivity among habitat patches. Anthropogenic barriers (e.g. roads) are a source of habitat fragmentation that can disrupt these resource networks and can have an influence on the spatial genetic structure of populations. Using microsatellite data, we evaluated whether observed genetic structure of moose ( Alces alces ) populations were associated with human activities (e.g. roads) in the urban habitat of Anchorage and rural habitat on the Kenai Peninsula, Alaska. We found evidence of a recent genetic subdivision among moose in Anchorage that corresponds to a major highway and associated infrastructure. This subdivision is most likely due to restrictions in gene flow due to alterations to the highway (e.g. moose-resistant fencing with one-way gates) and a significant increase in traffic volume over the past 30 years; genetic subdivision was not detected on the Kenai Peninsula in an area not bisected by a major highway. This study illustrates that anthropogenic barriers can substructure wildlife populations within a few generations and highlights the value of genetic assessments to determine the effects on connectivity among habitat patches in conjunction with behavioral and ecological data. .

Alaska↗

USGS2015

Monitoring digestibility of forages for herbivores: a new application for an old approach

Ruminant populations are often limited by how well individuals are able to acquire nutrients for growth, maintenance, and reproduction. Nutrient supply to the animal is dictated by the concentration of nutrients in feeds and the efficiency of digesting those nutrients (i.e., digestibility). Many different methods have been used to measure digestibility of forages for wild herbivores, all of which rely on collecting rumen fluid from animals or incubation within animals. Animal-based methods can provide useful estimates, but the approach is limited by the expense of fistulated animals, wide variation in digestibility among animals, and contamination from endogenous and microbial sources that impairs the estimation of nutrient digestibility. We tested an in vitro method using a two-stage procedure using purified enzymes. The first stage, a 6 h acid–pepsin treatment, was followed by a combined 72 h amylase–cellulase or amylase–Viscozyme treatment. We then validated our estimates using in sacco and in vivo methods to digest samples of the same forages. In vitro estimates of dry matter (DM) digestibility were correlated with estimates of in sacco and in vivo DM digestibility (both P < 0.01). The in vitro procedure using Viscozyme ( r 2 = 0.77) was more precise than the in vitro procedure using cellulase ( r 2 = 0.59). Both procedures can be used to predict in sacco digestibility after correcting for the biases of each method. We used the in vitro method to measure digestibility of nitrogen (N; 0.07–0.95 g/g), which declined to zero as total N content declined below 0.03–0.06 g/g of DM. The in vitro method is well suited to monitoring forage quality over multiple years because it is reproducible, can be used with minimal investment by other laboratories without animal facilities, and can measure digestibility of individual nutrients such as N.

Canadian Journal of Zoology↗

USGS2015

Population genetic structure of moose ( Alces alces ) of South-central Alaska

The location of a population can influence its genetic structure and diversity by impacting the degree of isolation and connectivity to other populations. Populations at range margins are often thought to have less genetic variation and increased genetic structure, and a reduction in genetic diversity can have negative impacts on the health of a population. We explored the genetic diversity and connectivity between 3 peripheral populations of moose ( Alces alces ) with differing potential for connectivity to other areas within interior Alaska. Populations on the Kenai Peninsula and from the Anchorage region were found to be significantly differentiated (F ST = 0.071, P < 0.0001) with lower levels of genetic diversity observed within the Kenai population. Bayesian analyses employing assignment methodologies uncovered little evidence of contemporary gene flow between Anchorage and Kenai, suggesting regional isolation. Although gene flow outside the peninsula is restricted, high levels of gene flow were detected within the Kenai that is explained by male-biased dispersal. Furthermore, gene flow estimates differed across time scales on the Kenai Peninsula which may have been influenced by demographic fluctuations correlated, at least in part, with habitat change.

Alces↗

USGS2014

Environmental and physiological influences to isotopic ratios of N and protein status in a montane ungulate in winter

Winter severity can influence large herbivore populations through a reduction in maternal proteins available for reproduction. Nitrogen (N) isotopes in blood fractions can be used to track the use of body proteins in northern and montane ungulates. We studied 113 adult female caribou for 13 years throughout a series of severe winters that reduced population size and offspring mass. After these severe winters, offspring mass increased but the size of the population remained low. We devised a conceptual model for routing of isotopic N in blood in the context of the severe environmental conditions experienced by this population. We measured δ 15 N in three blood fractions and predicted the relative mobilization of dietary and body proteins. The δ 15 N of the body protein pool varied by 4‰ and 46% of the variance was associated with year. Annual variation in δ 15 N of body protein likely reflected the fall/early winter diet and winter locations, yet 15% of the isotopic variation in amino acid N was due to body proteins. Consistent isotopic differences among blood N pools indicated that animals tolerated fluxes in diet and body stores. Conservation of body protein in caribou is the result of active exchange among diet and body N pools. Adult females were robust to historically severe winter conditions and prioritized body condition and survival over early investment in offspring. For a vagile ungulate residing at low densities in a predator-rich environment, protein restrictions in winter may not be the primary limiting factor for reproduction.

Alaska↗

USGS2014

Isotopic nitrogen in fecal fiber as an indicator of winter diet in caribou and muskoxen

RATIONALE: The ratios of stable nitrogen isotopes (δ 15 N values) in excreta have been used to examine aspects of trophic and nutritional ecology across taxa. Nitrogen fractions in feces of herbivores include endogenous (e.g., sloughed intestinal cells, unresorbed digestive secretions, and microbial debris) and dietary sources. For animals such as large herbivores, that have diets and feces with high concentrations of indigestible ﬁber, endogenous 15 N may constrain the use of fecal δ 15 N values to estimate dietary δ 15 N values and reconstruct diets. METHODS: We compared two techniques (detergent and detergent-free) to isolate fractions of plant ﬁbers in the forages of caribou ( Rangifer tarandus ) and muskoxen ( Ovibos moschatus ); estimated the discrimination factors between the δ 15 N values of fecal ﬁber residues and of the diets of captive animals; and used the more effective isotopic tracer of dietary δ 15 N values to examine the relationships between the δ 15 N values of fecal residues and diet composition in several populations of wild caribou and muskoxen throughout North America in winter. RESULTS: The detergent-based approach contaminated the fractions of plant ﬁbers in forages and feces with 14 N, whereas the detergent-free method was a good proxy to estimate δ 15 N values of plant ﬁbers (r 2 = 0.92) and provided a better estimate of the fecal-ﬁber to diet discrimination factor for both species (caribou = 3.6‰; muskoxen = 2.8‰). In wild populations, the δ 15 N values of fecal ﬁbers reﬂected diet composition in muskoxen (adjusted R 2 = 0.43) but not caribou (adjusted R 2 = 0.06). CONCLUSIONS: Contamination from detergent residues prohibited the use of detergent extraction in isolating forage 15 N from endogenous 15 N in the feces of herbivores. Although δ 15 N values in fecal ﬁbers can be used to track dietary δ 15 N values in wild herbivores, discrimination between fecal extracts and diet may vary with the contribution of endogenous nitrogen (N), and, therefore, residual endogenous 15 N in feces may limit dietary reconstructions from fecal δ 15 N values for some large herbivores.

Alaska↗

USGS2012

Diversity of nitrogen isotopes and protein status in caribou: implications for monitoring northern ungulates

Nutritional condition is an important determinant of productivity and survival in caribou (Rangifer tarandus). We used samples of excreta (n = 1,150) to estimate diet composition from microhistology and 2 isotopic proxies of protein status for 2 ecotypes of caribou in 4 herds in late winter (2006–2008). Isotopes of nitrogen (δ 15 N in parts per thousand [‰]) from excreta samples (urea, diet, and body N) were used to estimate indexes of protein status: the proportion of urea N derived from body N (p-UN) and the difference between the δ15N of the body and urinary urea (Δbody-urea). We examined dietary and terrain characteristics, δ 15 N, p-UN, and Δ body-urea by ecotype, herd, year, and foraging site. Multiple regression and an information-theoretic approach were used to evaluate correlates of protein status at each foraging site. The dietary and terrain characteristics of foraging sites did not vary by ecotype or herd (P > 0.108); diets were dominated by lichens (68% ± 14.1% SD). The δ 15 N of urea, diet, body N, p-UN, and Δ body-urea varied among foraging sites within each herd (P < 0.001). Although highly variable, the δ 15 N of urinary urea was typically low (−4.68‰ ± 2.67‰ SD). Dietary N also had low δ 15 N (−4.18‰ ± 0.92‰ SD), whereas body N was generally heavier in 15 N (2.20‰ ± 1.56‰ SD) than urinary urea or the diet. Both measures of protein status were similarly diverse between ecotypes and among herds, which limited their applicability to monitor protein status at the population level. Although we observed limitations to interpreting estimates of p-UN from highly vagile ungulates, the Δbody-urea may prove to be a useful index of protein status at smaller spatial and temporal scales. Indeed, a portion of the observed variance (r 2 = 0.26) in Δbody-urea at each foraging site was explained by the proportion of shrubs in the winter diet. There remains potential in using δ 15 N in excreta as a noninvasive tool for evaluating protein status in northern ungulates; however, considerable analytical and sampling challenges remain for applying these isotopic approaches at large scales.

Alaska↗

USGS2011

Characteristics of foraging sites and protein status in wintering muskoxen: insights from isotopes of nitrogen

Identifying links between nutritional condition of individuals and population trajectories greatly enhances our understanding of the ecology, conservation, and management of wildlife. For northern ungulates, the potential impacts of a changing climate to populations are predicted to be nutritionally mediated through an increase in the severity and variance in winter conditions. Foraging conditions and the availability of body protein as a store for reproduction in late winter may constrain productivity in northern ungulates, yet the link between characteristics of wintering habitats and protein status has not been established for a wild ungulate. We used a non‐invasive proxy of protein status derived from isotopes of N in excreta to evaluate the influence of winter habitats on the protein status of muskoxen in three populations in Alaska (2005–2008). Multiple regression and an information‐theoretic approach were used to compare models that evaluated the influence of population, year, and characteristics of foraging sites (components of diet and physiography) on protein status for groups of muskoxen. The observed variance in protein status among groups of muskoxen across populations and years was partially explained (45%) by local foraging conditions that affected forage availability. Protein status improved for groups of muskoxen as the amount of graminoids in the diet increased (−0.430 ± 0.31, β± 95% CI) and elevation of foraging sites decreased (0.824 ± 0.67). Resources available for reproduction in muskoxen are highly dependent upon demographic, environmental, and physiographic constraints that affect forage availability in winter. Due to their very sedentary nature in winter, muskoxen are highly susceptible to localized foraging conditions; therefore, the spatial variance in resource availability may exert a strong effect on productivity. Consequently, there is a clear need to account for climate–topography effects in winter at multiple scales when predicting the potential impacts of climatic shifts on population trajectories of muskoxen.

Oikos↗

USGS2011

An isotopic approach to measuring nitrogen balance in caribou

Nutritional restrictions in winter may reduce the availability of protein for reproduction and survival in northern ungulates. We refined a technique that uses recently voided excreta on snow to assess protein status in wild caribou ( Rangifer tarandus ) in late winter. Our study was the first application of this non‐invasive, isotopic approach to assess protein status of wild caribou by determining dietary and endogenous contributions of nitrogen (N) to urinary urea. We used isotopic ratios of N (δ 15 N) in urine and fecal samples to estimate the proportion of urea N derived from body N ( p ‐UN) in pregnant, adult females of the Chisana Herd, a small population that ranged across the Alaska‐Yukon border. We took advantage of a predator‐exclosure project to examine N status of penned caribou in April 2006. Lichens were the primary forage (>40%) consumed by caribou in the pen and δ 15 N of fiber tracked the major forages in their diets. The δ 15 N of urinary urea for females in the pen was depleted relative (−1.3 ± 1.0 parts per thousand [‰], ${\bar {x}}\pm {\rm SD}$ ) to the δ 15 N of body N (2.7 ± 0.7‰). A similar proportion of animals in the exclosure lost core body mass (excluding estimates of fetal and uterine tissues; 55%) and body protein (estimated by isotope ratios; 54%). This non‐invasive technique could be applied at various spatial and temporal scales to assess trends in protein status of free‐ranging populations of northern ungulates. Intra‐ and inter‐annual estimates of protein status could help managers monitor effects of foraging conditions on nutritional constraints in ungulates, increase the efficiency and efficacy of management actions, and help prepare stakeholders for potential changes in population trends.

Journal of Wildlife Management↗

USGS2001

Intermittent feeding in a migratory omnivore: Digestion and body composition of American Black Duck during autumn

Birds fast intermittently during weather disturbances and migration. We tested responses of black duck to lost feeding days during autumn mass gain. Nine adult males were fed a pelleted diet (1.5% fat, 15.8% protein, and 18.3% neutral detergent fiber) and caged indoors during September and October (12 h light; 17°–24°C) to measure balances over 14 d when fed ad lib. each day and fasted intermittently for 2 d wk −1 (short fast) or 4 d wk −1 (long fast). Body mass (1,081 g), body water content, and metabolizable intakes of energy and protein were maintained as daily intakes of dry matter increased to 1.65 (short fast) and 2.35 (long fast) times the unfasted level. Intermittent feeding reduced metabolizability of dry matter, energy, protein, and acid detergent fiber. Concentrations of Mn provided similar estimates of metabolizability to direct measures in unfasted birds but underestimated measures of birds on long fasts. Fasting regimes continued outdoors for 9 wk when temperatures declined to −9°C. Birds on short fasts were heavier (1,373 vs. 1,241 g) and fatter (159 vs. 58 g) than those on long fasts, while body water (894 g) and protein (316 g) were similar between groups after 5 wk. Birds on long fasts subsequently gained mass when fed daily, but those on short fasts lost mass when fed each day. Omnivorous waterfowl combine ingestive and digestive flexibility with plasticity of body lipid to contend with uncertain food availability.

Physiological and Biochemical Zoology↗