Geology topics

Patrick J. Sullivan

Publications and source records attributed to Patrick J. Sullivan.

10 recordsLinked to original sources

USGS2022

Balancing prey availability and predator consumption: A multispecies stock assessment for Lake Ontario

Trophic interactions are drivers of ecosystem change and stability, yet are often excluded from fishery assessment models, despite their potential capacity to improve estimates of species dynamics and future fishery sustainability. In Lake Ontario, recreational salmonine fisheries, including Chinook salmon ( Oncorhynchus tshawytscha ) and lake trout ( Salvelinus namaycush ), depend on a single prey species, alewife ( Alosa pseudoharengus ). To accommodate strong trophic interactions among species, we developed a multispecies statistical catch-at-age assessment (MSCAA) model that links the dynamics of the salmonine fisheries and alewife via prey consumption and predator growth. We found that prey availability had declined since 2015 due to decreased alewife recruitment and increased Chinook salmon biomass, leading to higher alewife mortality rates and lower predator growth rates. Forward projections of predator–prey dynamics suggest that Chinook salmon stocking reductions may improve the probability for alewife population growth, but could be counteracted by increased natural Chinook salmon recruitment. Combined with predator- and prey-monitoring efforts, multispecies assessments show promise as models of intermediate complexity to support a transition to ecosystem-based approaches to fisheries management.

Lake Ontario↗

USGS2019

Early mortality and freshwater forage fish recruitment: Nonnative alewife and native rainbow smelt interactions in Lake Champlain

We studied the consequences of a nonnative species introduction and changes in temperature on early mortality and recruitment of native rainbow smelt ( Osmerus mordax ) and nonnative alewife ( Alosa pseudoharengus ) in Lake Champlain using a simulation model. Distribution patterns of adults and young-of-the-year (YOY) fish were predicted using a model based on observed distribution of different age groups as a function of temperature and light profiles simulated on a daily basis. Mortality rates averaged over the growing season were calculated as a function of fish densities and overlap between adults and YOY. Survival of YOY rainbow smelt and alewife depended on which predator was most abundant. Rainbow smelt YOY mortality rates are highest when rainbow smelt adults are abundant, and alewife YOY mortality rates are highest when alewife adults are abundant, potentially allowing coexistence. August and September mortality rates were higher in the climate change scenario because of increased overlap of adults and YOY of both species. These results indicate that accounting for spatiotemporal fish distribution patterns can be important when forecasting the interacting effects of climate change and aquatic invasive species on fish recruitment.

New York, Quebec, Vermont↗

USGS2018

Acoustic telemetry and benthic habitat mapping inform the spatial ecology of Shortnose Sturgeon in the Hudson River, New York, USA

A history of overexploitation and industrialization of riverine habitats has impacted the Shortnose Sturgeon Acipenser brevirostrum , leading this species to become one of the earliest listed under the U.S. Endangered Species Act. The present understanding of Shortnose Sturgeon spatial ecology is based on observations from a limited number of Atlantic coastal rivers. To better understand Shortnose Sturgeon in the Hudson River, New York, we used acoustic telemetry to characterize seasonal habitat use and to identify regions of the river where seasonal sturgeon activity occurred. From 2012 to 2016, 101 adult fish were tagged and tracked, and sturgeon detections per unit effort (a metric of fish observation standardized by search effort) were evaluated against benthic habitat variables by using generalized additive regression models. Models indicated strong habitat associations in the spring season defined by gravel-dominated substrates and specific depth ranges, presumably associated with spawning activity. During summer, Shortnose Sturgeon were more dispersed, associating with muddy habitats, whereas in fall/winter, sturgeon congregated in specific regions of the river. These data demonstrate that river use and habitat associations vary seasonally and identify important areas for managing overlap between seasonal habitat use by Shortnose Sturgeon and human activity on the river.

New York↗

USGS2018

Piscivore diet shifts and trophic level change after Alewife establishment in Lake Champlain

Invasions and deliberate introductions of new prey species are likely to affect prey choice and trophic level of resident predators. Rainbow Smelt ( Osmerus mordax ) and Alewife ( Alosa pseudoharengus ) are common prey fish species in lakes throughout North America either as native or non‐native species. The establishment of Alewife in the 2000s in a lake with a native Rainbow Smelt population (Lake Champlain) presented an opportunity to study changes in the diet and trophic level of fish already established in the system. Using stable isotope analysis, we found that Alewife became a major component of predator diets, in particular of the diets of Atlantic Salmon ( Salmo salar ) and Walleye ( Sander vitreus ). Lake Trout ( Salvelinus namaycush ) consumed relatively few Alewives. For Walleye (the predator with both pre‐ and post‐Alewife isotope ratios available), the δ 15 N values decreased significantly from the pre‐Alewife period of the late 1990s, indicating that Walleye feed at lower trophic levels when Alewife are present. Predation on Alewife was correlated with the amount of spatial overlap of predators and prey. Our results show that the introduction of Alewife has altered the predator‐prey linkages in Lake Champlain; alterations that can have major effects on food web structure and trophic cascades.

Transactions of the American Fisheries Society↗

USGS2017

Pyrogenic carbon distribution in mineral topsoils of the northeastern United States

Due to its slow turnover rates in soil, pyrogenic carbon (PyC) is considered an important C pool and relevant to climate change processes. Therefore, the amounts of soil PyC were compared to environmental covariates over an area of 327,757 km 2 in the northeastern United States in order to understand the controls on PyC distribution over large areas. Topsoil (defined as the soil A horizon, after removal of any organic horizons) samples were collected at 165 field sites in a generalised random tessellation stratified design that corresponded to approximately 1 site per 1600 km 2 and PyC was estimated from diffuse reflectance mid-infrared spectroscopy measurements using a partial least-squares regression analysis in conjunction with a large database of PyC measurements based on a solid-state 13 C nuclear magnetic resonance spectroscopy technique. Three spatial models were applied to the data in order to relate critical environmental covariates to the changes in spatial density of PyC over the landscape. Regional mean density estimates of PyC were 11.0 g kg − 1 (0.84 Gg km − 2 ) for Ordinary Kriging, 25.8 g kg − 1 (12.2 Gg km − 2 ) for Multivariate Linear Regression, and 26.1 g kg − 1 (12.4 Gg km − 2 ) for Bayesian Regression Kriging. Akaike Information Criterion (AIC) indicated that the Multivariate Linear Regression model performed best (AIC = 842.6; n = 165) compared to Ordinary Kriging (AIC = 982.4) and Bayesian Regression Kriging (AIC = 979.2). Soil PyC concentrations correlated well with total soil sulphur (P < 0.001; n = 165), plant tissue lignin (P = 0.003), and drainage class (P = 0.008). This suggests the opportunity of including related environmental parameters in the spatial assessment of PyC in soils. Better estimates of the contribution of PyC to the global carbon cycle will thus also require more accurate assessments of these covariates.

Geoderma↗

USGS2017

Vertical distribution of alewife in the Lake Ontario offshore: Implications for resource use

Oligotrophication of Lake Ontario has led to increased water clarity and an increased proportion of zooplankton residing in the metalimnion during the day, which may affect the utilization of different depth regions for planktivorous fish. We investigated day and night distributions of fish using hydroacoustics and suspended vertical gillnets during the summer of 2013 when a deep chlorophyll layer (DCL) was established. We related fish distributions to concurrent measures of temperature and prey (zooplankton) density. Alewife dominated in vertical gill net catches, indicating that most acoustic targets were alewife. Alewife schooled during the day in the bottom of the mixed layer, and at dusk alewife schools broke up and fish moved towards the surface. We hypothesize this movement followed migrating zooplankton to allow feeding at night; alewife sampled from vertical gillnets fed on cyclopoid copepods and cladocerans, prey groups that migrate into the epilimnion at night. Some alewife remained at the bottom of the mixed layer at night and these fish ate deep-water calanoid copepods such as Limnocalanus . Vertical distributions were best predicted by temperature and the interaction between temperature and zooplankton density. We include uplooking acoustics data to complement our downlooking datasets, which provided evidence for potential bias in downlooking acoustic assessments of alewife due to high proportions of alewife found in the surface exclusion zone. Our approach combining several datasets provides a new perspective to understand summer diel distribution of alewife and the factors driving their distribution.

Journal of Great Lakes Research↗

USGS2016

Interactions between hatch dates, growth rates, and mortality of Age-0 native Rainbow Smelt and nonnative Alewife in Lake Champlain

Timing of hatch in fish populations can be critical for first-year survival and, therefore, year-class strength and subsequent species interactions. We compared hatch timing, growth rates, and subsequent mortality of age-0 Rainbow Smelt Osmerus mordax and Alewife Alosa pseudoharengus , two common open-water fish species of northern North America. In our study site, Lake Champlain, Rainbow Smelt hatched (beginning May 26) almost a month earlier than Alewives (June 20). Abundance in the sampling area was highest in July for age-0 Rainbow Smelt and August for age-0 Alewives. Late-hatching individuals of both species grew faster than those hatching earlier (0.6 mm/d versus 0.4 for Rainbow Smelt; 0.7 mm/d versus 0.6 for Alewives). Mean mortality rate during the first 45 d of life was 3.4%/d for age-0 Rainbow Smelt and was 5.5%/d for age-0 Alewives. Alewife mortality rates did not differ with hatch timing but daily mortality rates of Rainbow Smelt were highest for early-hatching fish. Cannibalism is probably the primary mortality source for age-0 Rainbow Smelt in this lake. Therefore, hatching earlier may not be advantageous because the overlap of adult and age-0 Rainbow Smelt is highest earlier in the season. However, Alewives, first documented in Lake Champlain in 2003, may increase the mortality of age-0 Rainbow Smelt in the summer, which should favor selection for earlier hatching.

Vermont↗

USGS2013

Sensitivity of fish density estimates to standard analytical procedures applied to Great Lakes hydroacoustic data

Standardized methods of data collection and analysis ensure quality and facilitate comparisons among systems. We evaluated the importance of three recommendations from the Standard Operating Procedure for hydroacoustics in the Laurentian Great Lakes (GLSOP) on density estimates of target species: noise subtraction; setting volume backscattering strength (S v ) thresholds from user-defined minimum target strength (TS) of interest (TS-based S v threshold); and calculations of an index for multiple targets (N v index) to identify and remove biased TS values. Eliminating noise had the predictable effect of decreasing density estimates in most lakes. Using the TS-based Sv threshold decreased fish densities in the middle and lower layers in the deepest lakes with abundant invertebrates (e.g., Mysis diluviana). Correcting for biased in situ TS increased measured density up to 86% in the shallower lakes, which had the highest fish densities. The current recommendations by the GLSOP significantly influence acoustic density estimates, but the degree of importance is lake dependent. Applying GLSOP recommendations, whether in the Laurentian Great Lakes or elsewhere, will improve our ability to compare results among lakes. We recommend further development of standards, including minimum TS and analytical cell size, for reducing the effect of biased in situ TS on density estimates.

Great Lakes↗

USGS2013

Evaluating analytical approaches for estimating pelagic fish biomass using simulated fish communities

Pelagic fish assessments often combine large amounts of acoustic-based fish density data and limited midwater trawl information to estimate species-specific biomass density. We compared the accuracy of five apportionment methods for estimating pelagic fish biomass density using simulated communities with known fish numbers that mimic Lakes Superior, Michigan, and Ontario, representing a range of fish community complexities. Across all apportionment methods, the error in the estimated biomass generally declined with increasing effort, but methods that accounted for community composition changes with water column depth performed best. Correlations between trawl catch and the true species composition were highest when more fish were caught, highlighting the benefits of targeted trawling in locations of high fish density. Pelagic fish surveys should incorporate geographic and water column depth stratification in the survey design, use apportionment methods that account for species-specific depth differences, target midwater trawling effort in areas of high fish density, and include at least 15 midwater trawls. With relatively basic biological information, simulations of fish communities and sampling programs can optimize effort allocation and reduce error in biomass estimates.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2012

Native rainbow smelt and nonnative alewife distribution related to temperature and light gradients in Lake Champlain

Alewife ( Alosa pseudoharengus ) recently became established in Lake Champlain and may compete with native rainbow smelt ( Osmerus mordax ) for food or consume larval rainbow smelt. The strength of this effect depends partly on the spatial and temporal overlap of different age groups of the two species; therefore, we need a better understanding of factors affecting alewife and rainbow smelt distributions in Lake Champlain. We used hydroacoustics, trawls, and gill nets to document vertical fish distribution, and recorded environmental data during 16 day–night surveys over two years. Temperature, temperature change, and light were all predictors of adult and age-0 rainbow smelt distribution, and temperature and light were predictors of age-0 alewives' distribution (based on GAMM models evaluated with AIC). Adult alewives were 5–30 m shallower and age-0 alewives were 2–15 m shallower than their rainbow smelt counterparts. Adult rainbow smelt distribution overlapped with age-0 rainbow smelt and age-0 alewives near the thermocline (10–25 m), whereas adult alewives were shallower (0–6 m) and overlapped with age-0 alewives and rainbow smelt in the epilimnion. Adult rainbow smelt were in water < 10–12 °C, whereas age-0 rainbow smelt were in 10–20 °C, and adult and age-0 alewives were in 15–22 °C water. Predicting these species distributions is necessary for quantifying the strength of predatory and competitive interactions between alewife and rainbow smelt, as well as between alewife and other fish species in Lake Champlain.

Vermont↗