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Geology topics

N. Knowles

Publications and source records attributed to N. Knowles.

10 recordsLinked to original sources
USGS2017

Application of an unstructured 3D finite volume numerical model to flows and salinity dynamics in the San Francisco Bay-Delta

A linked modeling approach has been undertaken to understand the impacts of climate and infrastructure on aquatic ecology and water quality in the San Francisco Bay-Delta region. The Delft3D Flexible Mesh modeling suite is used in this effort for its 3D hydrodynamics, salinity, temperature and sediment dynamics, phytoplankton and water-quality coupling infrastructure, and linkage to a habitat suitability model. The hydrodynamic model component of the suite is D-Flow FM, a new 3D unstructured finite-volume model based on the Delft3D model. In this paper, D-Flow FM is applied to the San Francisco Bay-Delta to investigate tidal, seasonal and annual dynamics of water levels, river flows and salinity under historical environmental and infrastructural conditions. The model is driven by historical winds, tides, ocean salinity, and river flows, and includes federal, state, and local freshwater withdrawals, and regional gate and barrier operations. The model is calibrated over a 9-month period, and subsequently validated for water levels, flows, and 3D salinity dynamics over a 2 year period. Model performance was quantified using several model assessment metrics and visualized through target diagrams. These metrics indicate that the model accurately estimated water levels, flows, and salinity over wide-ranging tidal and fluvial conditions, and the model can be used to investigate detailed circulation and salinity patterns throughout the Bay-Delta. The hydrodynamics produced through this effort will be used to drive affiliated sediment, phytoplankton, and contaminant hindcast efforts and habitat suitability assessments for fish and bivalves. The modeling framework applied here will serve as a baseline to ultimately shed light on potential ecosystem change over the current century.

California↗
USGS2015

Discovery of a novel hepatovirus (Phopivirus of seals) related to human hepatitis A virus

Describing the viral diversity of wildlife can provide interesting and useful insights into the natural history of established human pathogens. In this study, we describe a previously unknown picornavirus in harbor seals (tentatively named phopivirus) that is related to human hepatitis A virus (HAV). We show that phopivirus shares several genetic and phenotypic characteristics with HAV, including phylogenetic relatedness across the genome, a specific and seemingly quiescent tropism for hepatocytes, structural conservation in a key functional region of the type III internal ribosomal entry site (IRES), and a codon usage bias consistent with that of HAV.

mBio↗
USGS2008

Temporal downscaling of decadal sediment load estimates to a daily interval for use in hindcast simulations

In this study we used hydrologic proxies to develop a daily sediment load time-series, which agrees with decadal sediment load estimates, when integrated. Hindcast simulations of bathymetric change in estuaries require daily sediment loads from major tributary rivers, to capture the episodic delivery of sediment during multi-day freshwater flow pulses. Two independent decadal sediment load estimates are available for the Sacramento/San Joaquin River Delta, California prior to 1959, but they must be downscaled to a daily interval for use in hindcast models. Daily flow and sediment load data to the Delta are available after 1930 and 1959, respectively, but bathymetric change simulations for San Francisco Bay prior to this require a method to generate daily sediment load estimates into the Delta. We used two historical proxies, monthly rainfall and unimpaired flow magnitudes, to generate monthly unimpaired flows to the Sacramento/San Joaquin Delta for the 1851-1929 period. This step generated the shape of the monthly hydrograph. These historical monthly flows were compared to unimpaired monthly flows from the modern era (1967-1987), and a least-squares metric selected a modern water year analogue for each historical water year. The daily hydrograph for the modern analogue was then assigned to the historical year and scaled to match the flow volume estimated by dendrochronology methods, providing the correct total flow for the year. We applied a sediment rating curve to this time-series of daily flows, to generate daily sediment loads for 1851-1958. The rating curve was calibrated with the two independent decadal sediment load estimates, over two distinct periods. This novel technique retained the timing and magnitude of freshwater flows and sediment loads, without damping variability or net sediment loads to San Francisco Bay. The time-series represents the hydraulic mining period with sustained periods of increased sediment loads, and a dramatic decrease after 1910, corresponding to a reduction in available mining debris. The analogue selection procedure also permits exploration of the morphological hydrograph concept, where a limited set of hydrographs is used to simulate the same bathymetric change as the actual set of hydrographs. The final daily sediment load time-series and morphological hydrograph concept will be applied as landward boundary conditions for hindcasting simulations of bathymetric change in San Francisco Bay.

California↗
USGS2006

Trends in snowfall versus rainfall in the western United States

The water resources of the western United States depend heavily on snowpack to store part of the wintertime precipitation into the drier summer months. A well-documented shift toward earlier runoff in recent decades has been attributed to 1) more precipitation falling as rain instead of snow and 2) earlier snowmelt. The present study addresses the former, documenting a regional trend toward smaller ratios of winter-total snowfall water equivalent (SFE) to winter-total precipitation (P) during the period 1949-2004. The trends toward reduce d SFE are a response to warming across the region, with the most significant reductions occurring where winter wet-day minimum temperatures, averaged over the study period, were warmer than -5??C. Most SFE reductions were associated with winter wet-day temperature increases between 0?? and +3??C over the study period. Warmings larger than this occurred mainly at sites where the mean temperatures were cool enough that the precipitation form was less susceptible to warming trends. The trends toward reduced SFE/P ratios w ere most pronounced in March regionwide and in January near the West Coast, corresponding, to widespread warming in these months. While mean temperatures in March were sufficiently high to allow the warming, trend to produce SFE/P declines across the study region, mean January temperatures were cooler. with the result that January SFE/P impacts were restricted to the lower elevations near the West Coast. Extending the analysis back to 1920 sho ws that although the trends presented here may be partially attributable to interdecadal climate variability associated with the Pacific decadal oscillation. they also appear to result from still longer-term climate shifts.

Journal of Climate↗
USGS2005

Climate anomalies generate an exceptional dinoflagellate bloom in San Francisco Bay

We describe a large dinoflagellate bloom, unprecedented in nearly three decades of observation, that developed in San Francisco Bay (SFB) during September 2004. SFB is highly enriched in nutrients but has low summer‐autumn algal biomass because wind stress and tidally induced bottom stress produce a well mixed and light‐limited pelagic habitat. The bloom coincided with calm winds and record high air temperatures that stratified the water column and suppressed mixing long enough for motile dinoflagellates to grow and accumulate in surface waters. This event‐scale climate pattern, produced by an upper‐atmosphere high‐pressure anomaly off the U.S. west coast, followed a summer of weak coastal upwelling and high dinoflagellate biomass in coastal waters that apparently seeded the SFB bloom. This event suggests that some red tides are responses to changes in local physical dynamics that are driven by large‐scale atmospheric processes and operate over both the event scale of biomass growth and the antecedent seasonal scale that shapes the bloom community.

California↗
USGS2004

Elevational dependence of projected hydrologic changes in the San Francisco Estuary and watershed

California's primary hydrologic system, the San Francisco Estuary and its upstream watershed, is vulnerable to the regional hydrologic consequences of projected global climate change. Previous work has shown that a projected warming would result in a reduction of snowpack storage leading to higher winter and lower spring-summer streamflows and increased spring-summer salinities in the estuary. The present work shows that these hydrologic changes exhibit a strong dependence on elevation, with the greatest loss of snowpack volume in the 1300–2700 m elevation range. Exploiting hydrologic and estuarine modeling capabilities to trace water as it moves through the system reveals that the shift of water in mid-elevations of the Sacramento river basin from snowmelt to rainfall runoff is the dominant cause of projected changes in estuarine inflows and salinity. Additionally, although spring-summer losses of estuarine inflows are balanced by winter gains, the losses have a stronger influence on salinity since longer spring-summer residence times allow the inflow changes to accumulate in the estuary. The changes in inflows sourced in the Sacramento River basin in approximately the 1300–2200 m elevation range thereby lead to a net increase in estuarine salinity under the projected warming. Such changes would impact ecosystems throughout the watershed and threaten to contaminate much of California's freshwater supply.

San Francisco Estuary↗
USGS2002

Snow, topography, and the diurnal cycle in streamflow

Because snowmelt processes are spatially complex, point measurements, particularly in mountainous regions, are often inadequate to resolve basin-scale characteristics. Satellite measurements provide good spatial sampling but are often infrequent in time, particularly during cloudy weather. Fortunately, hourly measurements of river discharge provide another widely available, but as yet underutilized, source of information, providing direct information on basin output at a fine temporal scale. The hour of maximum discharge recorded each day reflects the travel time between peak melt and the time most water reaches the gauge. Traditional theories, based on numerical models of melt-water percolation through a snowpack and localized, small-basin observations, report that the hour of daily maximum flow becomes earlier as the snowpack thins and matures, reflecting shorter travel times for surface melt to reach the base of the snowpack. However, an examination of hourly discharge from 100 basins in the Western United States, ranging in size from 1.3 km2 to 10,813 km2, reveals a more complex situation. The sequences of seasonal evolution of the hour of maximum discharge are unique to each basin, but within a given basin are remarkably consistent between years, regardless of the size of the snowpack. This seems to imply that basin topography strongly influences the timing of peak flow. In most of the basins examined, at the end of the melt season, the hour of maximum discharge shifts to later in the day, reflecting increased travel times as the snowline retreats to higher elevations.

Conference Paper↗