Search USGS⌕ Search

Geology topics

Michael C. Runge

Publications and source records attributed to Michael C. Runge.

At least 55 records · Page 3Linked to original sources

Vote-processing rules for combining control recommendations from multiple models

Mathematical modelling is used during disease outbreaks to compare control interventions. Using multiple models, the best method to combine model recommendations is unclear. Existing methods weight model projections, then rank control interventions using the combined projections, presuming model outputs are directly comparable. However, the way each model represents the epidemiological system will vary. We apply electoral vote-processing rules to combine model-generated rankings of interventions. Combining rankings of interventions, instead of combining model projections, avoids assuming that projections are comparable as all comparisons of projections are made within each model. We investigate four rules: First-past-the-post, Alternative Vote (AV), Coombs Method and Borda Count. We investigate rule sensitivity by including models that favour only one action or including those that rank interventions randomly. We investigate two case studies: the 2014 Ebola outbreak in West Africa (37 compartmental models) and a hypothetical foot-and-mouth disease outbreak in UK (four individual-based models). The Coombs Method was least susceptible to adding models that favoured a single action, Borda Count and AV were most susceptible to adding models that ranked interventions randomly. Each rule chose the same intervention as when ranking interventions by mean projections, suggesting that combining rankings provides similar recommendations with fewer assumptions about model comparability.

Philosophical Transactions of the Royal Society A:↗

A structured decision-making framework for managing cyanobacterial harmful algal blooms in New York State parks

Cyanobacteria are increasingly a global water-quality concern because of the potential for these organisms to develop into potentially harmful blooms that affect ecological, economic, and public health. Cyanobacterial harmful algal blooms (CyanoHABs) can lead to a decrease in water quality and affect many of the recreational and ecological benefits of parks that include lakes. The New York State Office of Parks, Recreation and Historic Preservation (OPRHP) is a State agency within the New York State Executive Department charged with the operation of State parks and historic sites. Many New York State parks include lakes or other freshwater bodies, which can be susceptible to CyanoHABs. The OPRHP faces difficult decisions regarding prevention of and response to CyanoHABs. The U.S. Geological Survey partnered with the OPRHP and the New York State Department of Environmental Conservation to develop a structured decision-making template for managing CyanoHABs in OPRHP parks. Two parks, Moreau Lake State Park and Rockland Lake State Park, served as case studies to motivate and test the template. This report describes how the principles of structured decision making can be used to navigate the challenges associated with managing CyanoHABs in OPRHP parks. Management objectives and strategies for CyanoHABs in parks are described, strategies to evaluate consequences and manage tradeoffs are discussed, and potential challenges to the implementation of preferred alternatives are considered. General guidance is provided so the OPRHP can undertake the structured decision-making process for CyanoHABs in any of its parks. In addition, this report represents the first effort to create a strategy for applying decision analysis tools to the complex natural resource challenge of CyanoHAB mitigation and management. The case studies and template are intended to serve as an example that natural resource managers faced with CyanoHABs challenges can use to inform their decision-making processes.

New York↗

Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination

In Spring 2021, the highly transmissible SARS-CoV-2 Delta variant began to cause increases in cases, hospitalizations, and deaths in parts of the United States. At the time, with slowed vaccination uptake, this novel variant was expected to increase the risk of pandemic resurgence in the US in summer and fall 2021. As part of the COVID-19 Scenario Modeling Hub, an ensemble of nine mechanistic models produced 6-month scenario projections for July–December 2021 for the United States. These projections estimated substantial resurgences of COVID-19 across the US resulting from the more transmissible Delta variant, projected to occur across most of the US, coinciding with school and business reopening. The scenarios revealed that reaching higher vaccine coverage in July–December 2021 reduced the size and duration of the projected resurgence substantially, with the expected impacts was largely concentrated in a subset of states with lower vaccination coverage. Despite accurate projection of COVID-19 surges occurring and timing, the magnitude was substantially underestimated 2021 by the models compared with the of the reported cases, hospitalizations, and deaths occurring during July–December, highlighting the continued challenges to predict the evolving COVID-19 pandemic. Vaccination uptake remains critical to limiting transmission and disease, particularly in states with lower vaccination coverage. Higher vaccination goals at the onset of the surge of the new variant were estimated to avert over 1.5 million cases and 21,000 deaths, although may have had even greater impacts, considering the underestimated resurgence magnitude from the model.

eLife↗

Optimizing management of invasions in an uncertain world using dynamic spatial models

Dispersal drives invasion dynamics of nonnative species and pathogens. Applying knowledge of dispersal to optimize the management of invasions can mean the difference between a failed and a successful control program and dramatically improve the return on investment of control efforts. A common approach to identifying optimal management solutions for invasions is to optimize dynamic spatial models that incorporate dispersal. Optimizing these spatial models can be very challenging because the interaction of time, space, and uncertainty rapidly amplifies the number of dimensions being considered. Addressing such problems requires advances in and the integration of techniques from multiple fields, including ecology, decision analysis, bioeconomics, natural resource management, and optimization. By synthesizing recent advances from these diverse fields, we provide a workflow for applying ecological theory to advance optimal management science and highlight priorities for optimizing the control of invasions. One of the striking gaps we identify is the extremely limited consideration of dispersal uncertainty in optimal management frameworks, even though dispersal estimates are highly uncertain and greatly influence invasion outcomes. In addition, optimization frameworks rarely consider multiple types of uncertainty (we describe five major types) and their interrelationships. Thus, feedbacks from management or other sources that could magnify uncertainty in dispersal are rarely considered. Incorporating uncertainty is crucial for improving transparency in decision risks and identifying optimal management strategies. We discuss gaps and solutions to the challenges of optimization using dynamic spatial models to increase the practical application of these important tools and improve the consistency and robustness of management recommendations for invasions.

Ecological Applications↗

Evaluating the risk of SARS-CoV-2 transmission to bats in the context of wildlife research, rehabilitation, and control

Preventing wildlife disease outbreaks is a priority for natural resource agencies, and management decisions can be urgent, especially in epidemic circumstances. With the emergence of SARS-CoV-2, wildlife agencies were concerned whether the activities they authorize might increase the risk of viral transmission from humans to North American bats, but had a limited amount of time in which to make decisions. We describe how decision analysis provides a powerful framework to analyze and reanalyze complex natural resource management problems as knowledge evolves. Coupled with expert judgment and avenues for the rapid release of information, risk assessment can provide timely scientific information for evolving decisions. In April 2020, the first rapid risk assessment was conducted to evaluate the risk of transmission of SARS-CoV-2 from humans to North American bats. Based on the best available information and relying heavily on expert judgment, the risk assessment found a small possibility of transmission during summer work activities. Following that assessment, additional knowledge and data emerged, such as bat viral challenge studies, that further elucidated the risks of human-to-bat transmission and culminated in a second risk assessment in the fall of 2020. We updated the first SARS-CoV-2 risk assessment with new management alternatives and new estimates of little brown bat ( Myotis lucifugus ) susceptibility, using findings from the fall 2020 assessment and other empirical studies. We found that new knowledge led to an 88% decrease in the median number of bats estimated to be infected per 1,000 encountered when compared to earlier results. The use of facemasks during, or a negative COVID-19 test or vaccination prior to, bat encounters further reduced those risks. Using a combination of decision analysis, expert judgment, rapid risk assessment, and efficient modes of information distribution, we provided timely science-based support to decision makers for summer bat work in North America.

Wildlife Society Bulletin↗

An introduction to decision science for conservation

Biodiversity conservation decisions are difficult, especially when they involve differing values, complex multidimensional objectives, scarce resources, urgency, and considerable uncertainty. Decision science embodies a theory about how to make difficult decisions and an extensive array of frameworks and tools that make that theory practical. We sought to improve conceptual clarity and practical application of decision science to help decision makers apply decision science to conservation problems. We addressed barriers to the uptake of decision science, including a lack of training and awareness of decision science; confusion over common terminology and which tools and frameworks to apply; and the mistaken impression that applying decision science must be time consuming, expensive, and complex. To aid in navigating the extensive and disparate decision science literature, we clarify meaning of common terms: decision science , decision theory , decision analysis , structured decision-making , and decision-support tools . Applying decision science does not have to be complex or time consuming; rather, it begins with knowing how to think through the components of a decision utilizing decision analysis (i.e., define the problem, elicit objectives, develop alternatives, estimate consequences, and perform trade-offs). This is best achieved by applying a rapid-prototyping approach. At each step, decision-support tools can provide additional insight and clarity, whereas decision-support frameworks (e.g., priority threat management and systematic conservation planning) can aid navigation of multiple steps of a decision analysis for particular contexts. We summarize key decision-support frameworks and tools and describe to which step of a decision analysis, and to which contexts, each is most useful to apply. Our introduction to decision science will aid in contextualizing current approaches and new developments, and help decision makers begin to apply decision science to conservation problems.

Conservation Biology↗

Collaborative hubs: Making the most of predictive epidemic modeling

The COVID-19 pandemic has made it clear that epidemic models play an important role in how governments and the public understand and respond to infectious disease crises. In the early days of the COVID-19 pandemic, models were used first to estimate the true number of infections, then to provide estimates of key parameters, to generate short-term forecasts of outbreak trends, and to quantify the possible effects of different interventions on the unfolding epidemic. In contrast to the central coordinating role played by major national or international agencies in weather-related emergencies, pandemic modeling efforts were initially scattered across many individual research institutions and academic groups. Differences in modeling approaches and assumptions of each individual effort led to contrasting results that at times contributed to confusion in public perception of the pandemic. For this reason, recent efforts to publicly coordinate modeling efforts in so-called “hubs” have provided governments, public health partners, and the public with assessments and forecasts that reflect the consensus (or lack thereof) in the modeling community. This has been achieved by openly and transparently synthesizing uncertainties across different individual modeling approaches and facilitating comparisons between them.

American Journal of Public Health↗

Decision-support framework for linking regional-scale management actions to continental-scale conservation of wide-ranging species

Anas acuta (Northern pintail; hereafter pintail) was selected as a model species on which to base a decision-support framework linking regional actions to continental-scale population and harvest objectives. This framework was then used to engage stakeholders, such as Landscape Conservation Cooperatives’ (LCCs’) habitat management partners within areas of importance to pintails, while maximizing cross-taxa effects from the framework. The mathematical framework for the model had been previously developed for pintails. A key assumption incorporated into the model is that density dependence in survival occurs during the post-hunting (winter) period, where resources are hypothesized to be limiting. Because few data are available to directly inform this process, the approach used was to build a hierarchical Bayesian integrated population model (IPM) that simultaneously uses data from bird-band recoveries, breeding population counts, and harvest surveys to estimate values of parameters of an annual population projection model, including population size, survival rate, reproductive rate, and process and observation error variances, that are logically consistent with each other, given the mathematical structure imposed through the IPM. The main accomplishments of this study are (1) development of an IPM for pintail to guide harvest and habitat management, (2) development of a Prairie Parkland Region breeding submodel to predict pintail productivity, (3) development of statistical methodology to estimate pintail productivity (as measured by the ratio of juvenile to adults in hunter-collected wing samples) and winter survival and to relate these estimates to covariates, and (4) illustration of how to use a model and estimated parameter values to predict pintail population size and sustainable harvest as a function of habitat. Estimation of pintail survival from bird-banding data shows that there has been relatively little variation in survival over the period 1960–2013. A productivity model showed strong effects of breeding ground conditions, wintering-ground precipitation, and density dependence on pintail productivity. Thus, most temporal variation in pintail demographic rates has been due to effects on reproduction and not survival, including effects of breeding or wintering-ground habitat. These results indicate that habitat conservation efforts may be most effective if they focus on maintaining or increasing breeding and wintering-ground habitat to increase pintail productivity rather than pintail survival. Environmental perturbations in excess of historical experience, such as what could occur under climate change, might have meaningful effects on survival but cannot be estimated with current data. Direct effects of climate, land use, or management are likely to be greater on productivity than survival, but substantial uncertainty remains about predictions of equilibrium population size and sustainable yield.

Open-File Report↗

Synergistic interventions to control COVID-19: Mass testing and isolation mitigates reliance on distancing

Stay-at-home orders and shutdowns of non-essential businesses are powerful, but socially costly, tools to control the pandemic spread of SARS-CoV-2. Mass testing strategies, which rely on widely administered frequent and rapid diagnostics to identify and isolate infected individuals, could be a potentially less disruptive management strategy, particularly where vaccine access is limited. In this paper, we assess the extent to which mass testing and isolation strategies can reduce reliance on socially costly non-pharmaceutical interventions, such as distancing and shutdowns. We develop a multi-compartmental model of SARS-CoV-2 transmission incorporating both preventative non-pharmaceutical interventions (NPIs) and testing and isolation to evaluate their combined effect on public health outcomes. Our model is designed to be a policy-guiding tool that captures important realities of the testing system, including constraints on test administration and non-random testing allocation. We show how strategic changes in the characteristics of the testing system, including test administration, test delays, and test sensitivity, can reduce reliance on preventative NPIs without compromising public health outcomes in the future. The lowest NPI levels are possible only when many tests are administered and test delays are short, given limited immunity in the population. Reducing reliance on NPIs is highly dependent on the ability of a testing program to identify and isolate unreported, asymptomatic infections. Changes in NPIs, including the intensity of lockdowns and stay at home orders, should be coordinated with increases in testing to ensure epidemic control; otherwise small additional lifting of these NPIs can lead to dramatic increases in infections, hospitalizations and deaths. Importantly, our results can be used to guide ramp-up of testing capacity in outbreak settings, allow for the flexible design of combined interventions based on social context, and inform future cost-benefit analyses to identify efficient pandemic management strategies.

PLOS Computational Biology↗

Demographic risk assessment for a harvested species threatened by climate change: Polar bears in the Chukchi Sea

Climate change threatens global biodiversity. Many species vulnerable to climate change are important to humans for nutritional, cultural, and economic reasons. Polar bears Ursus maritimus are threatened by sea-ice loss and represent a subsistence resource for Indigenous people. We applied a novel population modeling-management framework that is based on species life history and accounts for habitat loss to evaluate subsistence harvest for the Chukchi Sea (CS) polar bear subpopulation. Harvest strategies followed a state-dependent approach under which new data were used to update the harvest on a predetermined management interval. We found that a harvest strategy with a starting total harvest rate of 2.7% (˜85 bears/yr at current abundance), a 2:1 male-to-female ratio, and a 10-yr management interval would likely maintain subpopulation abundance above maximum net productivity level for the next 35 yr (approximately three polar bear generations), our primary criterion for sustainability. Plausible bounds on starting total harvest rate were 1.7–3.9%, where the range reflects uncertainty due to sampling variation, environmental variation, model selection, and differing levels of risk tolerance. The risk of undesired demographic outcomes (e.g., overharvest) was positively related to harvest rate, management interval, and projected declines in environmental carrying capacity; and negatively related to precision in population data. Results reflect several lines of evidence that the CS subpopulation has been productive in recent years, although it is uncertain how long this will last as sea-ice loss continues. Our methods provide a template for balancing trade-offs among protection, use, research investment, and other factors. Demographic risk assessment and state-dependent management will become increasingly important for harvested species, like polar bears, that exhibit spatiotemporal variation in their response to climate change.

Chukchi Sea↗

Weighing the unknowns: Value of information for biological and operational uncertainty in invasion management

The management of biological invasions is a worldwide conservation priority. Unfortunately, decision-making on optimal invasion management can be impeded by lack of information about the biological processes that determine invader success (i.e. biological uncertainty) or by uncertainty about the effectiveness of candidate interventions (i.e. operational uncertainty). Concurrent assessment of both sources of uncertainty within the same framework can help to optimize control decisions. Here, we present a Value of Information (VoI) framework to simultaneously analyze the effects of biological and operational uncertainties on management outcomes. We demonstrate this approach with a case study: minimizing the long-term population growth of musk thistle ( Carduus nutans ), a widespread invasive plant, using several insects as biological control agents, including Trichosirocalus horridus , Rhinocyllus conicus , and Urophora solstitialis . The ranking of biocontrol agents was sensitive to differences in the target weed’s demography and also to differences in the effectiveness of the different biocontrol agents. This finding suggests that accounting for both biological and operational uncertainties is valuable when making management recommendations for invasion control. Furthermore, our VoI analyses show that reduction of all uncertainties across all combinations of demographic model and biocontrol effectiveness explored in the current study would lead, on average, to a 15.6% reduction in musk thistle population growth rate. The specific growth reduction that would be observed in any instance would depend on how the uncertainties actually resolve. Resolving biological uncertainty (across demographic model combinations) or operational uncertainty (across biocontrol effectiveness combinations) alone would reduce expected population growth rate by 8.5% and 10.5%, respectively. Synthesis and applications . Our study demonstrates that intervention rank is determined both by biological processes in the targeted invasive populations and by intervention effectiveness. Ignoring either biological uncertainty or operational uncertainty may result in a sub-optimal recommendation. Therefore, it is important to simultaneously acknowledge both sources of uncertainty during the decision-making process in invasion management. The framework presented here can accommodate diverse data sources and modelling approaches, and has wide applicability to guide invasive species management and conservation efforts.

Journal of Applied Ecology↗

Strategic testing approaches for targeted disease monitoring can be used to inform pandemic decision-making

More than 1.6 million Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) tests were administered daily in the United States at the peak of the epidemic, with a significant focus on individual treatment. Here, we show that objective-driven, strategic sampling designs and analyses can maximize information gain at the population level, which is necessary to increase situational awareness and predict, prepare for, and respond to a pandemic, while also continuing to inform individual treatment. By focusing on specific objectives such as individual treatment or disease prediction and control (e.g., via the collection of population-level statistics to inform lockdown measures or vaccine rollout) and drawing from the literature on capture–recapture methods to deal with nonrandom sampling and testing errors, we illustrate how public health objectives can be achieved even with limited test availability when testing programs are designed a priori to meet those objectives.

PLoS Biology↗

Modeling of future COVID-19 cases, hospitalizations, and deaths, by vaccination rates and nonpharmaceutical intervention scenarios — United States, April–September 2021

What is already known about this topic? Increases in COVID-19 cases in March and early April occurred despite a large-scale vaccination program. Increases coincided with the spread of SARS-CoV-2 variants and relaxation of nonpharmaceutical interventions (NPIs). What is added by this report? Data from six models indicate that with high vaccination coverage and moderate NPI adherence, hospitalizations and deaths will likely remain low nationally, with a sharp decline in cases projected by July 2021. Lower NPI adherence could lead to substantial increases in severe COVID-19 outcomes, even with improved vaccination coverage. What are the implications for public health practice? High vaccination coverage and compliance with NPIs are essential to control COVID-19 and prevent surges in hospitalizations and deaths in the coming months.

Morbidity and Mortality Weekly Report↗

A decision-analytical framework for developing harvest regulations

The development of harvest regulations for fish or wildlife is a complex decision that needs to weigh multiple objectives, consider a set of alternative regulatory options, integrate scientific understanding about the population dynamics of the harvested species as well as the human response to regulations, account for uncertainty, and provide an avenue for feedback from monitoring programs. The author describes how the field of decision analysis provides a framework for structuring such decisions and tools for navigating the components. At the center of any harvest management endeavor is a set of objectives that may include providing harvest opportunity, conserving the harvested population long into the future, and satisfying hunters, anglers, or trappers; tools from multi-criteria decision analysis are useful in finding the right balance among competing objectives. The population dynamics of harvested populations are often stochastic; tools from risk analysis and dynamic optimization can be used to find state-dependent policies that manage variation. Finally, harvest regulations are often set in the face of uncertainty; value-of-information methods can be used to evaluate the importance of that uncertainty, and adaptive management methods can be used to reduce it.

Book chapter↗

Adaptive management to improve eagle conservation at terrestrial wind facilities

The development and installation of renewable energy comes with environmental cost, including the death of wildlife. These costs occur locally, and seem small compared to the global loss of biodiversity. However, failure to acknowledge uncertainties around these costs affects local conservation, and may lead to the loss of populations or species. Working with these uncertainties can result in adaptive management plans designed to benefit renewable energy development and conservation. An example is the U.S. government's policy for managing bald ( Haliaeetus leucocephalus ) and golden ( Aquila chrysaetos ) eagle deaths at terrestrial wind facilities. Using records from 422 U.S. wind facilities we improved the precision of estimates of exposure (8.79 eagle minutes hr −1 km −3 , SD: 13.64) and collision probability (0.0058 birds per minute of exposure, SD: 0.0038) currently used in U.S. policy. The new estimates for bald (exposure: 3.19 eagle minutes hr −1 km −3 , SD: 2.583; collision probability: 0.007025 eagles per minute of exposure, SD: 0.004379) and golden (exposure: 1.21 eagle minutes hr −1 km −3 , SD: 0.352; collision probability: 0.005648 birds per minute of exposure, SD: 0.004413) eagles had a smaller mean and standard deviation. Thus, their implementation within the government's adaptive management framework could help refine the balance between energy consumption and conservation.

Conservation Science and Practice↗

Optimal strategies for managing wildlife harvest under climate change

Wildlife populations are experiencing shifting dynamics due to climate and landscape change. Management policies that fail to account for non‐stationary dynamics may fail to achieve management objectives. We establish a framework for understanding optimal strategies for managing a theoretical harvested population under non‐stationarity. Building from harvest theory, we develop scenarios representing changes in population growth rate ( ) or carrying capacity ( ) and derive time‐dependent optimal harvest policies using stochastic dynamic programming. We then evaluate the cost of falsely assuming stationarity by comparing the outcomes of forward projections in which either the optimal policy or a stationary policy is applied. When declines over time, the stationary policy leads to an underharvest of the population, resulting in less harvest over the short term but leaving the population in a higher‐value state. When declines over time, the stationary policy leads to overharvest, resulting in greater harvest returns in the short term but leaving the population in a lower and potentially more vulnerable state. This work demonstrates the basic properties of time‐dependent harvest management and provides a framework for evaluating the many outstanding questions about optimal management strategies under climate change. Published 2021. This article is a U.S. Government work and is in the public domain in the USA.

Journal of Wildlife Management↗