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Mary Freeman

Publications and source records attributed to Mary Freeman.

At least 55 records · Page 3Linked to original sources
USGS2016

Application of effective discharge analysis to environmental flow decision-making

Well-informed river management decisions rely on an explicit statement of objectives, repeatable analyses, and a transparent system for assessing trade-offs. These components may then be applied to compare alternative operational regimes for water resource infrastructure (e.g., diversions, locks, and dams). Intra- and inter-annual hydrologic variability further complicates these already complex environmental flow decisions. Effective discharge analysis (developed in studies of geomorphology) is a powerful tool for integrating temporal variability of flow magnitude and associated ecological consequences. Here, we adapt the effectiveness framework to include multiple elements of the natural flow regime (i.e., timing, duration, and rate-of-change) as well as two flow variables. We demonstrate this analytical approach using a case study of environmental flow management based on long-term (60 years) daily discharge records in the Middle Oconee River near Athens, GA, USA. Specifically, we apply an existing model for estimating young-of-year fish recruitment based on flow-dependent metrics to an effective discharge analysis that incorporates hydrologic variability and multiple focal taxa. We then compare three alternative methods of environmental flow provision. Percentage-based withdrawal schemes outcompete other environmental flow methods across all levels of water withdrawal and ecological outcomes.

Environmental Management↗
USGS2016

Using occupancy modeling and logistic regression to assess the distribution of shrimp species in lowland streams, Costa Rica: Does regional groundwater create favorable habitat?

Freshwater shrimps are an important biotic component of tropical ecosystems. However, they can have a low probability of detection when abundances are low. We sampled 3 of the most common freshwater shrimp species, Macrobrachium olfersii, Macrobrachium carcinus , and Macrobrachium heterochirus , and used occupancy modeling and logistic regression models to improve our limited knowledge of distribution of these cryptic species by investigating both local- and landscape-scale effects at La Selva Biological Station in Costa Rica. Local-scale factors included substrate type and stream size, and landscape-scale factors included presence or absence of regional groundwater inputs. Capture rates for 2 of the sampled species ( M. olfersii and M. carcinus ) were sufficient to compare the fit of occupancy models. Occupancy models did not converge for M. heterochirus , but M. heterochirus had high enough occupancy rates that logistic regression could be used to model the relationship between occupancy rates and predictors. The best-supported models for M. olfersii and M. carcinus included conductivity, discharge, and substrate parameters. Stream size was positively correlated with occupancy rates of all 3 species. High stream conductivity, which reflects the quantity of regional groundwater input into the stream, was positively correlated with M. olfersii occupancy rates. Boulder substrates increased occupancy rate of M. carcinus and decreased the detection probability of M. olfersii. Our models suggest that shrimp distribution is driven by factors that function at local (substrate and discharge) and landscape (conductivity) scales.

La Selva Biological Station, Saltito River, Salto ↗
USGS2016

Ecological resistance in urban streams: the role of natural and legacy attributes

Urbanization substantially changes the physicochemical and biological characteristics of streams. The trajectory of negative effect is broadly similar around the world, but the nature and magnitude of ecological responses to urban growth differ among locations. Some heterogeneity in response arises from differences in the level of urban development and attributes of urban water management. However, the heterogeneity also may arise from variation in hydrologic, biological, and physicochemical templates that shaped stream ecosystems before urban development. We present a framework to develop hypotheses that predict how natural watershed and channel attributes in the pre-urban-development state may confer ecological resistance to urbanization. We present 6 testable hypotheses that explore the expression of such attributes under our framework: 1) greater water storage capacity mitigates hydrologic regime shifts, 2) coarse substrates and a balance between erosive forces and sediment supply buffer morphological changes, 3) naturally high ionic concentrations and pH pre-adapt biota to water-quality stress, 4) metapopulation connectivity results in retention of species richness, 5) high functional redundancy buffers trophic function from species loss, and 6) landuse history mutes or reverses the expected trajectory of eutrophication. Data from past comparative analyses support these hypotheses, but rigorous testing will require targeted investigations that account for confounding or interacting factors, such as diversity in urban infrastructure attributes. Improved understanding of the susceptibility or resistance of stream ecosystems could substantially strengthen conservation, management, and monitoring efforts in urban streams. We hope that these preliminary, conceptual hypotheses will encourage others to explore these ideas further and generate additional explanations for the heterogeneity observed in urban streams.

Freshwater Science↗
USGS2016

Organic-matter retention and macroinvertebrate utilization of seasonally inundated bryophytes in a mid-order Piedmont River

There is increased understanding of the role of bryophytes in supporting invertebrate biomass and for their influence on nutrient cycling and carbon balance in aquatic systems, but the structural and functional role of bryophytes growing in seasonally inundated habitats is substantially less studied. We conducted a study on the Middle Oconee River, near Athens, GA, to assess invertebrate abundance and organic-matter retention in seasonally inundated patches of the liverwort Porella pinnata , a species that tends to be submerged only when water levels in rivers are substantially above base flow. Aquatic invertebrate utilization of these seasonally inundated habitats has rarely been investigated. Macroinvertebrate biomass, insect density, and organic-matter content were significantly greater in patches of P. pinnata than on adjacent bare rock. Bryophyte biomass explained additional variation in organic matter, insect biomass, and density. The most abundant insects in P. pinnata patches were Dipterans and Plecopterans. Our results suggest an important structural role of seasonally inundated bryophyte habitats in riverine ecosystems.

Georgia↗
USGS2015

Diel patterns and temporal trends in spawning activities of Robust Redhorse and River Redhorse in Georgia, assessed using passive acoustic monitoring

The conservation of imperiled species depends upon understanding threats to the species at each stage of its life history. In the case of many imperiled migratory fishes, understanding how timing and environmental influences affect reproductive behavior could provide managers with information critical for species conservation. We used passive acoustic recorders to document spawning activities for two large-bodied catostomids (Robust Redhorse Moxostoma robustum in the Savannah and Broad rivers, Georgia, and River Redhorse M. carinatum in the Coosawattee River, Georgia) in relation to time of day, water temperature, discharge variation, moonlight, and weather. Robust Redhorse spawning activities in the Savannah and Broad rivers were more frequent at night or in the early morning (0100–0400 hours and 0800–1000 hours, respectively) and less frequent near midday (1300 hours). Spawning attempts in the Savannah and Broad rivers increased over a 3–4-d period and then declined. River Redhorse spawning activities in the Coosawattee River peaked on the first day of recording and declined over four subsequent days; diel patterns were less discernible, although moon illumination was positively associated with spawning rates, which was also observed for Robust Redhorses in the Savannah River. Spawning activity in the Savannah and Broad rivers was negatively associated with water temperature, and spawning activity increased in association with cloud cover in the Savannah River. A large variation in discharge was only measured in the flow-regulated Savannah River and was not associated with spawning attempts. To our knowledge, this is the first study to show diel and multiday patterns in spawning activities for any Moxostoma species. These patterns and relationships between the environment and spawning activities could provide important information for the management of these species downstream of hydropower facilities.

Georgia↗
USGS2015

Evidence of population resistance to extreme low flows in a fluvial-dependent fish species

Extreme low streamflows are natural disturbances to aquatic populations. Species in naturally intermittent streams display adaptations that enhance persistence during extreme events; however, the fate of populations in perennial streams during unprecedented low-flow periods is not well-understood. Biota requiring swift-flowing habitats may be especially vulnerable to flow reductions. We estimated the abundance and local survival of a native fluvial-dependent fish species (Etheostoma inscriptum) across 5 years encompassing historic low flows in a sixth-order southeastern USA perennial river. Based on capturemark-recapture data, the study shoal may have acted as a refuge during severe drought, with increased young-of-the-year (YOY) recruitment and occasionally high adult immigration. Contrary to expectations, summer and autumn survival rates (30 days) were not strongly depressed during low-flow periods, despite 25%-80% reductions in monthly discharge. Instead, YOY survival increased with lower minimum discharge and in response to small rain events that increased low-flow variability. Age-1+ fish showed the opposite pattern, with survival decreasing in response to increasing low-flow variability. Results from this population dynamics study of a small fish in a perennial river suggest that fluvial-dependent species can be resistant to extreme flow reductions through enhanced YOY recruitment and high survival

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS2015

Shoal basses: A clade of cryptic identity

Shoal basses are a cryptic clade composed of Micropterus spp. restricted to the Apalachicola River system and three southeastern Atlantic slope river drainages in the southeastern United States. This reciprocally monophyletic clade includes the Shoal Bass M. cataractae (endemic to the Apalachicola River system), the Chattahoochee Bass M. chattahoochae, and two undescribed forms from the Altamaha, Ogeechee, and Savannah River drainages. Members of the shoal bass clade can be distinguished from all other species of Micropterus basses using 20 diagnostic characters (characteristic attributes) found in mitochondrial DNA (NADH dehydrogenase subunit 2) gene sequences. Each member of the clade additionally possesses unique characteristic attributes, which along with morphological and meristic characters can be used to diagnose this cryptic biodiversity. Biologists and managers have previously regarded the shoal basses in the Chattahoochee, Savannah, Altamaha and Ogeechee River systems as belonging to a single taxon synonymous with the Redeye Bass M. coosae, which is endemic to the Mobile River drainage. With these and previous analyses (including description of the Shoal Bass), we now recognize that what was once considered a single taxon actually comprises seven species, each of which is endemic to a single southeastern drainage. Recognizing and documenting the actual diversity of Micropterus spp. provides important information for managers who may wish to avoid stocking or translocations that could compromise the genetic integrity of native bass populations. Introductions of nonnative basses, including Alabama Bass M. henshalli, Spotted Bass M. punctulatus, and Smallmouth Bass M. dolomieu currently threaten the integrity of native shoal bass species in streams of the Chattahoochee, Altamaha, Ogeechee, and Savannah River systems.

Conference Paper↗
USGS2014

Passive acoustic monitoring to detect spawning in large-bodied catostomids

Documenting timing, locations, and intensity of spawning can provide valuable information for conservation and management of imperiled fishes. However, deep, turbid or turbulent water, or occurrence of spawning at night, can severely limit direct observations. We have developed and tested the use of passive acoustics to detect distinctive acoustic signatures associated with spawning events of two large-bodied catostomid species (River Redhorse Moxostoma carinatum and Robust Redhorse Moxostoma robustum ) in river systems in north Georgia. We deployed a hydrophone with a recording unit at four different locations on four different dates when we could both record and observe spawning activity. Recordings captured 494 spawning events that we acoustically characterized using dominant frequency, 95% frequency, relative power, and duration. We similarly characterized 46 randomly selected ambient river noises. Dominant frequency did not differ between redhorse species and ranged from 172.3 to 14,987.1 Hz. Duration of spawning events ranged from 0.65 to 11.07 s, River Redhorse having longer durations than Robust Redhorse. Observed spawning events had significantly higher dominant and 95% frequencies than ambient river noises. We additionally tested software designed to automate acoustic detection. The automated detection configurations correctly identified 80–82% of known spawning events, and falsely indentified spawns 6–7% of the time when none occurred. These rates were combined over all recordings; rates were more variable among individual recordings. Longer spawning events were more likely to be detected. Combined with sufficient visual observations to ascertain species identities and to estimate detection error rates, passive acoustic recording provides a useful tool to study spawning frequency of large-bodied fishes that displace gravel during egg deposition, including several species of imperiled catostomids.

Georgia↗
USGS2014

Are large-scale flow experiments informing the science and management of freshwater ecosystems?

Greater scientific knowledge, changing societal values, and legislative mandates have emphasized the importance of implementing large-scale flow experiments (FEs) downstream of dams. We provide the first global assessment of FEs to evaluate their success in advancing science and informing management decisions. Systematic review of 113 FEs across 20 countries revealed that clear articulation of experimental objectives, while not universally practiced, was crucial for achieving management outcomes and changing dam-operating policies. Furthermore, changes to dam operations were three times less likely when FEs were conducted primarily for scientific purposes. Despite the recognized importance of riverine flow regimes, four-fifths of FEs involved only discrete flow events. Over three-quarters of FEs documented both abiotic and biotic outcomes, but only one-third examined multiple taxonomic responses, thus limiting how FE results can inform holistic dam management. Future FEs will present new opportunities to advance scientifically credible water policies.

Frontiers in Ecology and the Environment↗
USGS2014

Stream classification of the Apalachicola-Chattahoochee-Flint River System to support modeling of aquatic habitat response to climate change

A stream classification and associated datasets were developed for the Apalachicola-Chattahoochee-Flint River Basin to support biological modeling of species response to climate change in the southeastern United States. The U.S. Geological Survey and the Department of the Interior’s National Climate Change and Wildlife Science Center established the Southeast Regional Assessment Project (SERAP) which used downscaled general circulation models to develop landscape-scale assessments of climate change and subsequent effects on land cover, ecosystems, and priority species in the southeastern United States. The SERAP aquatic and hydrologic dynamics modeling efforts involve multiscale watershed hydrology, stream-temperature, and fish-occupancy models, which all are based on the same stream network. Models were developed for the Apalachicola-Chattahoochee-Flint River Basin and subbasins in Alabama, Florida, and Georgia, and for the Upper Roanoke River Basin in Virginia. The stream network was used as the spatial scheme through which information was shared across the various models within SERAP. Because these models operate at different scales, coordinated pair versions of the network were delineated, characterized, and parameterized for coarse- and fine-scale hydrologic and biologic modeling. The stream network used for the SERAP aquatic models was extracted from a 30-meter (m) scale digital elevation model (DEM) using standard topographic analysis of flow accumulation. At the finer scale, reaches were delineated to represent lengths of stream channel with fairly homogenous physical characteristics (mean reach length = 350 m). Every reach in the network is designated with geomorphic attributes including upstream drainage basin area, channel gradient, channel width, valley width, Strahler and Shreve stream order, stream power, and measures of stream confinement. The reach network was aggregated from tributary junction to tributary junction to define segments for the benefit of hydrological, soil erosion, and coarser ecological modeling. Reach attributes are summarized for each segment. In six subbasins segments are assigned additional attributes about barriers (usually impoundments) to fish migration and stream isolation. Segments in the six sub-basins are also attributed with percent urban area for the watershed upstream from the stream segment for each decade from 2010–2100 from models of urban growth. On a broader scale, for application in a coarse-scale species-response model, the stream-network information is aggregated and summarized by 256 drainage subbasins (Hydrologic Response Units) used for watershed hydrologic and stream-temperature models. A model of soil erodibility based on the Revised Universal Soil Loss Equation also was developed at this scale to parameterize a model to evaluate stream condition. The reach-scale network was classified using multivariate clustering based on modeled channel width, valley width, and mean reach gradient as variables. The resulting classification consists of a 6-cluster and a 12-cluster classification for every reach in the Apalachicola-Chattahoochee-Flint Basin. We present an example of the utility of the classification that was tested using the occurrence of two species of darters and two species of minnows in the Apalachicola-Chattahoochee-Flint River Basin, the blackbanded darter and Halloween darter, and the bluestripe shiner and blacktail shiner.

Alabama, Florida, Georgia, Virginia↗
USGS2013

Training the next generation of river warriors

Review of: Environmental Flows: Saving Rivers in the Third Millennium. Angela H. Arthington. University of California Press, 2012. 422 pp., illus. $75.00 (ISBN 9780520273696 cloth).

BioScience↗
USGS2013

Progress toward establishing a national assessment of water availability and use

The Omnibus Public Land Management Act of 2009 (Public Law 111-11) was passed into law on March 30, 2009. Subtitle F, also known as the SECURE Water Act, calls for the establishment of a "national water availability and use assessment program" within the U.S. Geological Survey (USGS). A major driver for this recommendation was that national water availability and use have not been comprehensively assessed since 1978. This report fulfills a requirement to report to Congress on progress in implementing the national water availability and use assessment program, also referred to as the National Water Census. The SECURE Water Act authorized \$20 million for each of fiscal years (FY) 2009 through 2023 for assessment of national water availability and use. The first appropriation for this effort was \$4 million in FY 2011, followed by an appropriation of \$6 million in FY 2012. The National Water Census synthesizes and reports information at the regional and national scales, with an emphasis on compiling and reporting the information in a way that is useful to states and others responsible for water management and natural-resource issues. The USGS works with Federal and non-Federal agencies, universities, and other organizations to ensure that the information can be aggregated with other types of water-availability and socioeconomic information, such as data on food and energy production. To maximize the utility of the information, the USGS coordinates the design and development of the effort through the Federal Advisory Committee on Water Information. A National Water Census is a complex undertaking, particularly because there are major gaps in the information needed to conduct such an assessment. To maximize progress, the USGS engaged stakeholders in a discussion of priorities and leveraged existing studies and program activities to enhance efforts toward the development of a National Water Census.

Circular↗
USGS2012

Dealing with uncertainty when assessing fish passage through culvert road crossings

Assessing the passage of aquatic organisms through culvert road crossings has become increasingly common in efforts to restore stream habitat. Several federal and state agencies and local stakeholders have adopted assessment approaches based on literature-derived criteria for culvert impassability. However, criteria differ and are typically specific to larger-bodied fishes. In an analysis to prioritize culverts for remediation to benefit imperiled, small-bodied fishes in the Upper Coosa River system in the southeastern United States, we assessed the sensitivity of prioritization to the use of differing but plausible criteria for culvert impassability. Using measurements at 256 road crossings, we assessed culvert impassability using four alternative criteria sets represented in Bayesian belief networks. Two criteria sets scored culverts as either passable or impassable based on alternative thresholds of culvert characteristics (outlet elevation, baseflow water velocity). Two additional criteria sets incorporated uncertainty concerning ability of small-bodied fishes to pass through culverts and estimated a probability of culvert impassability. To prioritize culverts for remediation, we combined estimated culvert impassability with culvert position in the stream network relative to other barriers to compute prospective gain in connected stream habitat for the target fish species. Although four culverts ranked highly for remediation regardless of which criteria were used to assess impassability, other culverts differed widely in priority depending on criteria. Our results emphasize the value of explicitly incorporating uncertainty into criteria underlying remediation decisions. Comparing outcomes among alternative, plausible criteria may also help to identify research most needed to narrow management uncertainty.

Environmental Management↗
USGS2012

Linking river management to species conservation using dynamic landscape scale models

Efforts to conserve stream and river biota could benefit from tools that allow managers to evaluate landscape-scale changes in species distributions in response to water management decisions. We present a framework and methods for integrating hydrology, geographic context and metapopulation processes to simulate effects of changes in streamflow on fish occupancy dynamics across a landscape of interconnected stream segments. We illustrate this approach using a 482 km 2 catchment in the southeastern US supporting 50 or more stream fish species. A spatially distributed, deterministic and physically based hydrologic model is used to simulate daily streamflow for sub-basins composing the catchment. We use geographic data to characterize stream segments with respect to channel size, confinement, position and connectedness within the stream network. Simulated streamflow dynamics are then applied to model fish metapopulation dynamics in stream segments, using hypothesized effects of streamflow magnitude and variability on population processes, conditioned by channel characteristics. The resulting time series simulate spatially explicit, annual changes in species occurrences or assemblage metrics (e.g. species richness) across the catchment as outcomes of management scenarios. Sensitivity analyses using alternative, plausible links between streamflow components and metapopulation processes, or allowing for alternative modes of fish dispersal, demonstrate large effects of ecological uncertainty on model outcomes and highlight needed research and monitoring. Nonetheless, with uncertainties explicitly acknowledged, dynamic, landscape-scale simulations may prove useful for quantitatively comparing river management alternatives with respect to species conservation.

Georgia↗
USGS2012

Occupancy modeling and estimation of the holiday darter species complex within the Etowah River system

Documenting the status of rare fishes is a crucial step in effectively managing populations and implementing regulatory mechanisms of protection. In recent years, site occupancy has become an increasingly popular metric for assessing populations, but species distribution models that do not account for imperfect detection can underestimate the proportion of sites occupied and the strength of the relationship with a hypothesized covariate. However, valid detection requires temporal or spatial replication, which is often not feasible due to logistical or budget constraints. In this study, we used a method that allowed for spatial replication during a single visit to evaluate the current status of the holiday darter species complex, Etheostoma sp. cf. E. brevirostrum, within the Etowah River system. Moreover, the modeling approach used in this study facilitated comparisons of factors influencing stream occupancy as well as species detection within sites. The results suggest that there is less habitat available for the Etowah holiday darter form (Etheostoma sp. cf. E. brevirostrum B) than for the Amicalola holiday darter form (Etheostoma sp. cf. E. brevirostrum A). Additionally, occupancy models suggest that even small decreases in forest cover within these headwater systems adversely affect holiday darter populations.

Etowah River System↗
USGS2011

Large-scale flow experiments for managing river systems

Experimental manipulations of streamflow have been used globally in recent decades to mitigate the impacts of dam operations on river systems. Rivers are challenging subjects for experimentation, because they are open systems that cannot be isolated from their social context. We identify principles to address the challenges of conducting effective large-scale flow experiments. Flow experiments have both scientific and social value when they help to resolve specific questions about the ecological action of flow with a clear nexus to water policies and decisions. Water managers must integrate new information into operating policies for large-scale experiments to be effective. Modeling and monitoring can be integrated with experiments to analyze long-term ecological responses. Experimental design should include spatially extensive observations and well-defined, repeated treatments. Large-scale flow manipulations are only a part of dam operations that affect river systems. Scientists can ensure that experimental manipulations continue to be a valuable approach for the scientifically based management of river systems.

BioScience↗
USGS2011

Use of recent and historical records to estimate status and trends of a rare and imperiled stream fish, Percina jenkinsi (Percidae)

Rarely encountered animals may be present but undetected, potentially leading to incorrect assumptions about the persistence of a local population or the conservation priority of a particular area. The federally endangered and narrowly endemic Conasauga logperch ( Percina jenkinsi ) is a good example of a rarely encountered fish species of conservation concern, for which basic population statistics are lacking. We evaluated the occurrence frequency for this species using surveys conducted with a repeat-observation sampling approach during the summer of 2008. We also analyzed museum records since the late 1980s to evaluate the trends in detected status through time. The results of these analyses provided support for a declining trend in this species over a portion of its historical range, despite low estimated detection probability. We used the results to identify the expected information return for a given level of monitoring where the sampling approach incorporates incomplete detection. The method applied here may be of value where historic occurrence records are available, provided that the assumption of constant capture efficiency is reasonable.

Canadian Journal of Fisheries and Aquatic Sciences↗