Geology topics

Mark P. Ebener

Publications and source records attributed to Mark P. Ebener.

At least 19 recordsLinked to original sources

USGS2023

Estimates of adult Lake Trout mortality from coded wire tags in a population with developing natural reproduction in southern Lake Michigan

Objective Overfishing and Sea Lamprey Petromyzon marinus predation led to extirpation of Lake Trout Salvelinus namaycush from Lake Michigan in the 1950s. Large populations of hatchery‐reared fish were developed by the 1970s, but natural reproduction was limited until the early 2000s when it began to increase in the southern main basin. Hypothesizing that the relatively low mortality of spawning‐aged fish contributed to this reproductive success, we estimated the total annual mortality rate for this population. Methods We used catch curves to estimate the total instantaneous mortality rate Z using coded wire tags, which provided definitive ages. We made separate estimates from fish collected in three on‐going surveys: a spring gill‐net survey, a fall gill‐net spawning survey, and a sport fishery survey. Result Our estimates of Z ± SE were 0.297 ± 0.019, 0.239 ± 0.009, and 0.205 ± 0.007 for the spring, spawning, and sport fishery surveys, respectively. We suggest that the mean Z ± SE of all survey estimates of 0.247 ± 0.027 would be a reasonable estimate for this population, which equates to a total annual mortality of 22 ± 3%. This estimate is in the low range of rates reported for the species and is in the same range as other populations in the Great Lakes with well‐established natural reproduction. Conclusion We concluded that these low total mortality rates contributed to the reproductive success in southern Lake Michigan through increasing spawning stock density and age structure and that previous estimates of another important population parameter, the instantaneous natural mortality rate M , were too high. Estimates of M ranged from 0.210 to 0.240 and were based on the Pauly equation, a growth‐ and temperature‐based estimator. We suggest maximum‐age‐based estimators of M are more appropriate for Lake Trout. Several alternative maximum‐age‐based estimators produced estimates for M of 0.132–0.058, all of which are more compatible with our estimate of Z .

Lake Michigan↗

USGS2022

Genetic population structure of cisco, Coregonus artedi, in the Laurentian Great Lakes

Management of a widely distributed species can be a challenge when management priorities, resource status, and assessment methods vary across jurisdictions. For example, restoration and preservation of coregonine species diversity is a goal of management agencies across the Laurentian Great Lakes. However, management goals and the amount of information available varies across management units, making the focus for management efforts challenging to determine. Genetic data provide a spatially consistent means to assess diversity. Therefore, we examined the genetic stock structure of cisco ( Coregonus artedi ) in the Great Lakes where the species is still extant. Using genotype data from 17 microsatellite DNA loci, we observed low levels of population structure among collections with most contributions to overall diversity occurring among lakes. Cisco from lakes Superior, Michigan, Ontario, and the St. Marys River could be considered single genetic populations while distinct genetic populations were observed among samples from northern Lake Huron. Significant within-lake diversity in Lake Huron is supported by populations found in embayments in northern Lake Huron. The Grand Traverse Bay population in Lake Michigan represents a distinct population with reduced levels of genetic variation when compared to other lakes. The different levels of within lake population structure we observed will be important to consider as future lake-specific management plans are developed.

Great Lakes↗

USGS2022

Estimating catch curve mortality based on relative return rates of coded wire tagged lake trout in US waters of Lake Huron

We estimated total mortality using catch curves based on relative return rates (RRs) of coded wire tagged lake trout ( Salvelinus namaycush ) in US waters of Lake Huron. RR was calculated as age-specific CPUE per million of fish stocked. Annual mortality for the late 1990s through early 2000s was estimated as 38% from the 1991–1995 year classes, with an effective age range of 5–10 years, and then was estimated as 24% for the post-2000 period from the 1996–2009 year classes. The two estimates from simple catch curve regressions based on average RR at age values were the same as from a mixed model with individual RR values from all stocking events. These two estimates were also comparable to the findings from statistical catch-at-age assessments with fundamentally different assumptions. Our approach is not constrained by the assumption that the expected recruitment is a constant over time and thus has the advantage to use multiple observations on each age from multiple cohorts. Our approach has broad applicability to aquatic ecosystems in which multiple mark-and-release events of fish stocking have been implemented.

Michigan↗

USGS2021

Setting and tracking suppression targets for sea lampreys in the Great Lakes

In response to invasive species, the course of action taken by management agencies often evolves over a range of options from a do-nothing approach to suppression to complete eradication. As a case study of suppression targets, we explore the history of approaches used by the Great Lakes Fishery Commission in response to the invasion of the Laurentian Great Lakes by sea lampreys ( Petromyzon marinus ). With the early realization that eradication was not possible using available techniques, focus shifted to suppression of sea lampreys to support fish community objectives for the lakes. As a surrogate for damage to the fishery, a suppression target was defined for the maximum acceptable marking rate, indicated by the average number of sea lamprey wounds observed on every 100 large lake trout ( Salvelinus namaycush ) surveyed. Historic marking rates were used to delineate time periods of acceptable sea lamprey predation levels as an approximate measure of sea lamprey-induced mortality. A second target, independent of lake trout population status, was based on the average sea lamprey abundance estimated during the specified time periods. These intuitive targets have served as suppression benchmarks for the Sea Lamprey Control Program in the Great Lakes, allowing decision makers to gauge progress towards targets, refine control strategies and prioritize geographic areas for increased control effort. Here we document the development and subsequent changes to targets, summarize the methods used to implement these changes, and provide considerations for the future.

Great Lakes↗

USGS2017

Asynchrony in the inter-annual recruitment of lake whitefish Coregonus clupeaformis in the Great Lakes region

Spatially separated fish populations may display synchrony in annual recruitment if the factors that drive recruitment success, particularly abiotic factors such as temperature, are synchronised across broad spatial scales. We examined inter-annual variation in recruitment among lake whitefish ( Coregonus clupeaformis ) populations in lakes Huron, Michigan and Superior using fishery-dependent and -independent data from 1971 to 2014. Relative year-class strength (RYCS) was calculated from catch-curve residuals for each year class across multiple sampling years. Pairwise comparison of RYCS among datasets revealed no significant associations either within or between lakes, suggesting that recruitment of lake whitefish is spatially asynchronous. There was no consistent correlation between pairwise agreement and the distance between datasets, and models to estimate the spatial scale of recruitment synchrony did not fit well to these data. This suggests that inter-annual recruitment variation of lake whitefish is asynchronous across broad spatial scales in the Great Lakes. While our method primarily evaluated year-to-year recruitment variation, it is plausible that recruitment of lake whitefish varies at coarser temporal scales (e.g. decadal). Nonetheless, our findings differ from research on some other Coregonus species and suggest that local biotic or density-dependent factors may contribute strongly to lake whitefish recruitment rather than inter-annual variability in broad-scale abiotic factors.

Great Lakes↗

USGS2017

Movement patterns and spatial segregation of two populations of lake trout Salvelinus namaycush in Lake Huron

Movement ecology is an important component of life history and population dynamics, and consequently its understanding can inform successful fishery management decision-making. While lake trout populations in Lake Huron have shown signs of recovery from near extinction in recent years, knowledge of their movement behavior remains incomplete. We used acoustic telemetry to describe and compare movement patterns of two Lake Huron lake trout populations: Drummond Island and Thunder Bay. Both populations showed high spawning site fidelity, with no evidence of co-mingling during non-spawning season. Detections between spawning periods were mainly limited to receivers within 100 km of spawning locations, and suggested that the two populations likely remained segregated throughout the year. Drummond Island fish, which spawn inside the Drummond Island Refuge, primarily dispersed east into Canadian waters of Lake Huron, with 79–92% of fish being detected annually on receivers outside the refuge. In contrast, Thunder Bay fish tended to disperse south towards Saginaw Bay. Large proportions (i.e., > 80%) of both populations were available to fisheries outside the management zone containing their spawning location. Thunder Bay fish moved relatively quickly to overwinter habitat after spawning, and tended to repeat the same post-spawning movement behavior each year. The consistent, predictable movement of both populations across management zones highlights the importance of understanding population dynamics to effective management of Lake Huron lake trout.

Journal of Great Lakes Research↗

USGS2017

2016 Lake Michigan Lake Trout Working Group Report

This report provides a review on the progression of lake trout rehabilitation towards meeting the Salmonine Fish Community Objectives (FCOs) for Lake Michigan (Eshenroder et. al. 1995) and the interim goal and evaluation objectives articulated in A Fisheries Management Implementation Strategy for the Rehabilitation of Lake Trout in Lake Michigan (Dexter et al. 2011); we also include data describing lake trout stocking and mortality to portray the present state of progress towards lake trout rehabilitation.

Report↗

USGS2016

Mercury accumulation, and the mercury-PCB-sex interaction, in lake whitefish ( Coregonus clupeaformis )

We determined whole-fish Hg concentrations of 26 female and 34 male adult lake whitefish (Coregonus clupeaformis) from northern Lake Huron captured during November 2010. Subsampling from these 60 fish, Hg concentration was also determined in both the somatic tissue and ovaries (n=5), while methylmercury (MeHg) concentration was determined in whole fish (n=18). Bioenergetics modeling was used to assess the growth dilution effect on the difference in Hg concentrations between the sexes. Mean whole-fish Hg concentration in females (59.9 ng/g) was not significantly different from mean whole-fish Hg concentration in males (54.4 ng/g). MeHg accounted for 91% of the mercury found in the lake whitefish. Bioenergetics modeling results indicated that the growth dilution effect did not contribute to a difference in Hg concentration between the sexes. We estimated that females increased in Hg concentration by 17.9%, on average, immediately after spawning due to release of eggs. Using PCB data for the same 60 lake whitefish from a previous study, we detected a significant interaction between sex and contaminant type (Hg or PCBs), which was attributable to males being significantly higher in PCB concentration than females. Males may be eliminating Hg at a faster rate than females.

Lake Huron↗

USGS2016

Reply to comments by Riley and Dunlop on He et al. (2015)

He et al. (2015) described piscivory patterns in the main basin of Lake Huron 1984-2010, during which there was also a pattern of stepwise declines in the abundance of dominant prey fish species. The approach of He et al. (2015) was to couple age-structured stock assessment and fish bioenergetics models to estimate prey fish consumption, and to compare these patterns with prey fish biomass from a bottom trawl survey. Riley and Dunlop (2015) were highly critical of the methods and conclusions reached by He et al. (2015). They claimed that we incorrectly interpreted the bottom trawl survey data, and did not account for uncertainty. We respond to these and other criticisms below, which we find do not undermine our findings.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2015

Spatial synchrony in cisco recruitment

We examined the spatial scale of recruitment variability for disparate cisco ( Coregonus artedi ) populations in the Great Lakes ( n = 8) and Minnesota inland lakes ( n = 4). We found that the scale of synchrony was approximately 400 km when all available data were utilized; much greater than the 50-km scale suggested for freshwater fish populations in an earlier global analysis. The presence of recruitment synchrony between Great Lakes and inland lake cisco populations supports the hypothesis that synchronicity is driven by climate and not dispersal. We also found synchrony in larval densities among three Lake Superior populations separated by 25–275 km, which further supports the hypothesis that broad-scale climatic factors are the cause of spatial synchrony. Among several candidate climate variables measured during the period of larval cisco emergence, maximum wind speeds exhibited the most similar spatial scale of synchrony to that observed for cisco. Other factors, such as average water temperatures, exhibited synchrony on broader spatial scales, which suggests they could also be contributing to recruitment synchrony. Our results provide evidence that abiotic factors can induce synchronous patterns of recruitment for populations of cisco inhabiting waters across a broad geographic range, and show that broad-scale synchrony of recruitment can occur in freshwater fish populations as well as those from marine systems.

Minnesota↗

USGS2015

PCB concentrations of lake whitefish ( Coregonus clupeaformis ) vary by sex

We determined whole-fish polychlorinated biphenyl (PCB) concentrations in 26 female lake whitefish ( Coregonus clupeaformis ) and 34 male lake whitefish from northern Lake Huron. In 5 of the 26 female lake whitefish, we also determined PCB concentrations in the somatic tissue and ovaries. In addition, bioenergetics modeling was used to determine the contribution of the growth dilution effect to the observed difference in PCB concentrations between the sexes. Whole-fish PCB concentrations for females and males averaged 60 ng/g and 80 ng/g, respectively; thus males were 34% higher in PCB concentration compared with females. Based on the PCB determinations in the somatic tissue and ovaries, we predicted that PCB concentration of females would increase by 2.5%, on average, immediately after spawning due to release of eggs. Thus, the change in PCB concentration due to release of eggs did not explain, to any degree, the higher PCB concentrations observed in males compared with females. Bioenergetics modeling results indicated that the growth dilution effect could account for males being only 0.7% higher in PCB concentration compared with females. Thus, the growth dilution effect contributed very little to the observed difference in PCB concentrations between the sexes. We conclude that males were higher than females in PCB concentration most likely due to a higher rate of energy expenditure, stemming from greater activity and a greater resting metabolic rate. A higher rate of energy expenditure leads to a higher rate of food consumption, which, in turn, leads to a higher PCB accumulation rate.

Michigan↗

USGS2015

Coupling age-structured stock assessment and fish bioenergetics models: a system of time-varying models for quantifying piscivory patterns during the rapid trophic shift in the main basin of Lake Huron

We quantified piscivory patterns in the main basin of Lake Huron during 1984–2010 and found that the biomass transfer from prey fish to piscivores remained consistently high despite the rapid major trophic shift in the food webs. We coupled age-structured stock assessment models and fish bioenergetics models for lake trout ( Salvelinus namaycush ), Chinook salmon ( Oncorhynchus tshawytscha ), walleye ( Sander vitreus ), and lake whitefish ( Coregonus clupeaformis ). The model system also included time-varying parameters or variables of growth, length–mass relations, maturity schedules, energy density, and diets. These time-varying models reflected the dynamic connections that a fish cohort responded to year-to-year ecosystem changes at different ages and body sizes. We found that the ratio of annual predation by lake trout, Chinook salmon, and walleye combined with the biomass indices of age-1 and older alewives ( Alosa pseudoharengus ) and rainbow smelt ( Osmerus mordax ) increased more than tenfold during 1987–2010, and such increases in predation pressure were structured by relatively stable biomass of the three piscivores and stepwise declines in the biomass of alewives and rainbow smelt. The piscivore stability was supported by the use of alternative energy pathways and changes in relative composition of the three piscivores. In addition, lake whitefish became a new piscivore by feeding on round goby ( Neogobius melanostomus ). Their total fish consumption rivaled that of the other piscivores combined, although fish were still a modest proportion of their diet. Overall, the use of alternative energy pathways by piscivores allowed the increases in predation pressure on dominant diet species.

Lake Huron↗

USGS2015

Using time-varying asymptotic length and body condition of top piscivores to indicate ecosystem regime shift in the main basin of Lake Huron: a Bayesian hierarchical modeling approach

We evaluated the ecosystem regime shift in the main basin of Lake Huron that was indicated by the 2003 collapse of alewives, and dramatic declines in Chinook salmon abundance thereafter. We found that the period of 1995-2002 should be considered as the early phase of the final regime shift. We developed two Bayesian hierarchical models to describe time-varying growth based on the von Bertalanffy growth function and the length-mass relationship. We used asymptotic length as an index of growth potential, and predicted body mass at a given length as an index of body condition. Modeling fits to length and body mass at age of lake trout, Chinook salmon, and walleye were excellent. Based on posterior distributions, we evaluated the shifts in among-year geometric means of the growth potential and body condition. For a given top piscivore, one of the two indices responded to the regime shift much earlier than the 2003 collapse of alewives, the other corresponded to the 2003 changes, and which index provided the early signal differed among the three top piscivores.

Lake Huron↗

USGS2014

Lake trout in northern Lake Huron spawn on submerged drumlins

Recent observations of spawning lake trout Salvelinus namaycush near Drummond Island in northern Lake Huron indicate that lake trout use drumlins, landforms created in subglacial environments by the action of ice sheets, as a primary spawning habitat. From these observations, we generated a hypothesis that may in part explain locations chosen by lake trout for spawning. Most salmonines spawn in streams where they rely on streamflows to sort and clean sediments to create good spawning habitat. Flows sufficient to sort larger sediment sizes are generally lacking in lakes, but some glacial bedforms contain large pockets of sorted sediments that can provide the interstitial spaces necessary for lake trout egg incubation, particularly if these bedforms are situated such that lake currents can penetrate these sediments. We hypothesize that sediment inclusions from glacial scavenging and sediment sorting that occurred during the creation of bedforms such as drumlins, end moraines, and eskers create suitable conditions for lake trout egg incubation, particularly where these bedforms interact with lake currents to remove fine sediments. Further, these bedforms may provide high-quality lake trout spawning habitat at many locations in the Great Lakes and may be especially important along the southern edge of the range of the species. A better understanding of the role of glacially-derived bedforms in the creation of lake trout spawning habitat may help develop powerful predictors of lake trout spawning locations, provide insight into the evolution of unique spawning behaviors by lake trout, and aid in lake trout restoration in the Great Lakes.

Michigan↗

USGS2013

Spatial and temporal genetic diversity of lake whitefish (Coregonus clupeaformis (Mitchill)) from Lake Huron and Lake Erie

Lake whitefish (Coregonus clupeaformis (Mitchill)) are important commercially, culturally, and ecologically in the Laurentian Great Lakes. Stocks of lake whitefish in the Great Lakes have recovered from low levels of abundance in the 1960s. Reductions in abundance, loss of habitat and environmental degradation can be accompanied by losses of genetic diversity and overall fitness that may persist even as populations recover demographically. Therefore, it is important to be able to identify stocks that have reduced levels of genetic diversity. In this study, we investigated patterns of genetic diversity at microsatellite DNA loci in lake whitefish collected between 1927 and 1929 (historical period) and between 1997 and 2005 (contemporary period) from Lake Huron and Lake Erie. Genetic analysis of lake whitefish from Lakes Huron and Erie shows that the amount of population structuring varies from lake to lake. Greater genetic divergences among collections from Lake Huron may be the result of sampling scale, migration patterns and demographic processes. Fluctuations in abundance of lake whitefish populations may have resulted in periods of increased genetic drift that have resulted in changes in allele frequencies over time, but periodic genetic drift was not severe enough to result in a significant loss of genetic diversity. Migration among stocks may have decreased levels of genetic differentiation while not completely obscuring stock boundaries. Recent changes in spatial boundaries to stocks, the number of stocks and life history characteristics of stocks further demonstrate the potential of coregonids for a swift and varied response to environmental change and emphasise the importance of incorporating both spatial and temporal considerations into management plans to ensure that diversity is preserved.

Lake Erie, Lake Huron↗

USGS2013

Morphometric variation among spawning cisco aggregations in the Laurentian Great Lakes: are historic forms still present?

Cisco (Coregonus artedi Leseur, formerly lake herring Leucichthys artedi Leseur) populations in each of the Laurentian Great Lakes collapsed between the late 1920s and early 1960s following a multitude of stressors, and never recovered in Lakes Michigan, Erie and Ontario. Prior to their collapse, Koelz (1929) studied Leucichthys spp. in the Great Lakes basin and provided a description of their diversity. Three cisco morphotypes were described; a ‘slim terete’morphotype (L. artedi artedi), a ‘deep compressed’ morphotype (L. artedi albus), and a deep-bodied form resembling tullibee in western Canadian lakes (L. artedi manitoulinus). Based on body measurements of 159 individuals (Koelz 1929), we used discriminant function analysis (DFA) to discriminate historic morphotypes. Shapes of historic morphotypes were found to vary significantly (Pillai’s trace = 1.16, P < 0.0001). The final DFA model used nine body measurements and correctly classified 90% of the historic cisco. Important discriminating measurements included body depth, eye diameter, and dorsal fin base and height. Between October-November of 2007-2011, we sampled cisco from 16 Great Lakes sites collecting digital photographs of over 1, 700 individuals. We applied the DFA model to their body measurements and classified each individual to a morphotype. Contemporary cisco from Lakes Superior, Ontario and Michigan were predominantly classified as artedi, while the most common classifications from northern Lake Huron were albus and manitoulinus. Finding historic morphotypes is encouraging because it suggests that the morphological variation present prior to their collapse still exists. We conclude that contemporary cisco having shapes matching the missing historic morphotypes in the lower lakes warrant special consideration as potential donor populations in reestablishment efforts.

Lake Michigan;Lake Erie;Lake Ontario;Lake Huron;La↗

USGS2012

Lake trout status in the main basin of Lake Huron, 1973-2010

We developed indices of lake trout Salvelinus namaycush status in the main basin of Lake Huron (1973-2010) to understand increases in the relative abundance of wild year-classes during 1995-2010. Sea lamprey Petromyzon marinus wounds per 100 lake trout declined from 23.63 in 2000 to 5.86-10.64 in 2002-2010. The average age-7 lake trout catch per effort per recruitment (CPE/R; fish•305mof gill net - 1•million stocked yearlings -1 ) increased from 0.56 for the 1973-1990 year-classes to 0.92 for the 1991-2001 year-classes. Total CPE (fish/305 m of gill net) declined from 16.4 fish in 1996 to 4.1 fish in 2010, but the percentage of age-5 and younger lake trout steadily decreased from more than 70% before 1996 to less than 10% by 2009. The modal age in gill-net catches increased from age 5 before 1996 to age 7 by 2005. The average adult CPE increased from 2.8 fish/305 m of gill net during 1978-1995 to 5.34 fish/305 m of gill net during 1996-2010. The 1995-2010 year-classes of wild fish weremore abundant than previous year-classes and were associated with the relatively high adult abundance during 1996-2010. Until the 2002 year-class, there was no decline in age-7 CPE/R; until 2008, there was no decline in adult CPE. Low survival of the 2002 and 2003 year-classes of stocked fish was related to the event of alewife Alosa pseudoharengus population collapse in 2003-2004. Lake trout in the main basin of Lake Huron are undergoing a transition from a hatchery stock to a wild stock, accompanied by an increased uncertainty in delayed recruitment. Future management should pay more attention to the protection of wild recruitment and the abundance of the spawning stock.

Lake Huron↗

USGS2012

Genetic structure of lake whitefish, Coregonus clupeaformis, populations in the northern main basin of Lake Huron

Genetic analysis of spawning lake whitefish ( Coregonus clupeaformis ) from six sites in the main basin of Lake Huron was conducted to determine population structure. Samples from fisheryindependent assessment surveys in the northwest main basin were analyzed to determine the relative contributions of lake whitefish genetic populations. Genetic population structure was identified using data from seven microsatellite DNA loci. One population was identified at Manitoulin Island, one to two were observed in the east-central main basin (Fishing Island and Douglas Point), and one to two populations were found in the northwest (Thunder Bay and Duncan Bay). The genetic identity of collections from Duncan Bay and Thunder Bay was not consistent among methods used to analyze population structure. Low genetic distances suggested that they comprised one population, but genic differences indicated that they may constitute separate populations. Simulated data indicated that the genetic origins of samples from a mixed-fishery could be accurately identified, but accuracy could be improved by incorporating additional microsatellite loci. Mixture analysis and individual assignment tests performed on mixed-stock samples collected from the western main basin suggested that genetic populations from the east-central main basin contributed less than those from the western main basin and that the proportional contribution of each baseline population was similar in each assessment sample. Analysis of additional microsatellite DNA loci may be useful to help improve the precision of the estimates, thus increasing our ability to manage and protect this valuable resource.

Michigan, Ontario↗