Geology topics

Louis Bernatchez

Publications and source records attributed to Louis Bernatchez.

4 recordsLinked to original sources

USGS2024

Origin of the Laurentian Great Lakes fish fauna through upward adaptive radiation cascade prior to the Last Glacial Maximum

The evolutionary histories of adaptive radiations can be marked by dramatic demographic fluctuations. However, the demographic histories of ecologically-linked co-diversifying lineages remain understudied. The Laurentian Great Lakes provide a unique system of two such radiations that are dispersed across depth gradients with a predator-prey relationship. We show that the North American Coregonus species complex (“ciscoes”) radiated rapidly prior to the Last Glacial Maximum (80–90 kya), a globally warm period, followed by rapid expansion in population size. Similar patterns of demographic expansion were observed in the predator species, Lake Charr ( Salvelinus namaycush ), following a brief time lag, which we hypothesize was driven by predator-prey dynamics. Diversification of prey into deep water created ecological opportunities for the predators, facilitating their demographic expansion, which is consistent with an upward adaptive radiation cascade. This study provides a new timeline and environmental context for the origin of the Laurentian Great Lakes fish fauna, and firmly establishes this system as drivers of ecological diversification and rapid speciation through cyclical glaciation.

Communications Biology↗

USGS2022

Thirteen novel ideas and underutilized resources to support progress towards a range-wide American eel stock assessment

A robust assessment of the American eel ( Anguilla rostrata ) stock, required to guide conservation efforts, is challenged by the species’ vast range, high variability in demographic parameters and data inadequacies. Novel ideas and underutilised resources that may assist both analytic assessments and spatially oriented modelling include (1) species and environmental databases; (2) mining of data from scattered sources; (3) infilling of data gaps by spatial analysis; (4) age estimation from measurements of DNA methylation; evaluation of eel abundance by (5) larval, (6) glass-bottom boat, (7) net enclosure and (8) eDNA surveys; (9) accounting for dam-induced habitat increases in eel watercourse modelling; (10) spatially oriented modelling with and without temporal components; (11) geographically nested modelling of glass eel recruitment; (12) spawner per recruit modelling and (13) life cycle modelling to examine larval allocation effects. Eel biologists are too few to gather the required assessment data across all of the species’ range. Public posting of electrofishing and eDNA metabarcoding data sets and the use of machine learning techniques to comprehensively inventory small dams will help meet some data needs. These approaches address only a small proportion of the assessment challenges that face American eels. Worldwide collaboration amongst Anguilla scientists is a key enabler of progress towards stock assessment goals.

North America, South America↗

USGS2018

Next‐generation conservation genetics and biodiversity monitoring

This special issue of Evolutionary Applications consists of 10 publications investigating the use of next‐generation tools and techniques in population genetic analyses and biodiversity assessment. The special issue stems from a 2016 Next Generation Genetic Monitoring Workshop, hosted by the National Institute for Mathematical and Biological Synthesis (NIMBioS) in Tennessee, USA. The improved accessibility of next‐generation sequencing platforms has allowed molecular ecologists to rapidly produce large amounts of data. However, with the increased availability of new genomic markers and mathematical techniques, care is needed in selecting appropriate study designs, interpreting results in light of conservation concerns, and determining appropriate management actions. This special issue identifies key attributes of successful genetic data analyses in biodiversity evaluation and suggests ways to improve analyses and their application in current population and conservation genetics research.

Evolutionary Applications↗

USGS2014

Genetic evidence of local exploitation of Atlantic salmon in a coastal subsistence fishery in the Northwest Atlantic

Fisheries targeting mixtures of populations risk the over utilization of minor stock constituents unless harvests are monitored and managed. We evaluated stock composition and exploitation of Atlantic salmon in a subsistence fishery in coastal Labrador, Canada using genetic mixture analysis and individual assignment with a microsatellite baseline (15 loci, 11 829 individuals, 12 regional groups) encompassing the species western Atlantic range. Bayesian and maximum likelihood mixture analyses of fishery samples over six years (2006-2011; 1 772 individuals) indicate contributions of adjacent stocks of 96-97%. Estimates of fishery associated exploitation were highest for Labrador salmon (4.2-10.6% per year) and generally < 1% for other regions. Individual assignment of fishery samples indicated non-local contributions to the fishery (e.g., Quebec, Newfoundland) were rare and primarily in southern Labrador, consistent with migration pathways utilizing the Strait of Belle Isle. This work illustrates how genetic analysis of mixed stock Atlantic salmon fisheries in the northwest Atlantic using this new baseline can disentangle exploitation and reveal complex migratory behaviours.

Canadian Journal of Fisheries and Aquatic Sciences↗