Geology topics

Larry R. Brown

Publications and source records attributed to Larry R. Brown.

83 records · Page 5Linked to original sources

USGS1998

Concentrations of chlorinated organic compounds in biota and bed sediment in streams of the lower San Joaquin River drainage, California

Samples of resident biota and bed sediments were collected in 1992 from 18 sites on or near the floor of the San Joaquin Valley, California, for analysis of 33 organochlorine compounds. The sites were divided into five groups on the basis of physiographic region and land use. Ten compounds were detected in tissue, and 16 compounds were detected in bed sediment. The most frequently detected compound in both media was p,p'-DDE. Concentrations of total DDT (sum of o,p'- and p,p'-forms of DDD, DDE, and DDT) were statistically different among groups of sites for tissue and sediment (Kruskal-Wallis, P < 0.05). Concentrations in both media were highest in streams draining the west side of the valley. Concentrations of total DDT in tissue were significantly correlated with specific conductance, pH, and total alkalinity (P < 0.05), which are indicators of the proportion of irrigation-return flows in stream discharge. Concentrations in sediment on a dry-weight basis were not correlated with these water-quality parameters, but total-organic- carbon (TOC) normalized concentrations were significantly correlated with specific conductance and pH (P < 0.05). Regressions of the concentration of total DDT in tissue as a function of total DDT in bed sediment were significant and explained as much as 76 percent of the variance in the data. The concentration of total DDT in sediment may be related to mechanisms of soil transport to surface water with bioavailability of compounds related to the concentration of TOC in sediment.

Open-File Report↗

USGS1998

Assemblages of fishes and their associations with environmental variables, lower San Joaquin River drainage, California

Twenty sites in the lower San Joaquin River drainage, California, were sampled from 1993 to 1995 to characterize fish assemblages and their associations with measures of water quality and habitat quality. In addition, four fish community metrics were assessed, including percentages of native fish, omnivorous fish, fish intolerant of environmental degradation, and fish with external anomalies. Of the 31 taxa of fish captured during the study, only 10 taxa were native to the drainage. Multivariate analyses of percentage data identified four site groups characterized by characterized by different groups of species. The distributions of fish species were related to specific conductance, gradient, and mean depth; however, specific conductance acted as a surrogate variable for a large group of correlated variables. Two of the fish community metrics--percentage of introduced fish and percentage of intolerant fish--appeared to be responsive to environmental quality but the responses of the other two metrics--percentage of omnivorous fish and percentage of fish with anomalies--were less direct. The conclusion of the study is that fish assemblages are responsive to environmental conditions, including conditions associated with human-caused disturbances, particularly agriculture and water development. The results suggest that changes in water management and water quality could result in changes in species distributions. Balancing the costs and benefits of such changes poses a considerable challenge to resource managers. different groups of species.

Open-File Report↗

USGS1998

Environmental setting of the San Joaquin-Tulare basins, California

The National Water-Quality Assessment Program for the San Joaquin-Tulare Basins began in 1991 to study the effects of natural and anthropogenic influences on the quality of ground water, surface water, biology, and ecology. The San Joaquin-Tulare Basins study unit, which covers approximately 31,200 square miles in central California, is made up of the San Joaquin Valley, the eastern slope of the Coast Ranges to the west, and the western slope of the Sierra Nevada to the east. The sediments of the San Joaquin Valley can be divided into alluvial fans and basin deposits. The San Joaquin River receives water from tributaries draining the Sierra Nevada and Coast Ranges, and except for streams discharging directly to the Sacramento-San Joaquin Delta, is the only surface- water outlet from the study unit. The surface-water hydrology of the San Joaquin-Tulare Basins study unit has been significantly modified by development of water resources. Almost every major river entering the valley from the Sierra Nevada has one or more reservoirs. Almost every tributary and drainage into the San Joaquin River has been altered by a network of canals, drains, and wasteways. The Sierra Nevada is predominantly forested, and the Coast Ranges and the foothills of the Sierra Nevada are predominately rangeland. The San Joaquin Valley is dominated by agriculture, which utilized approximately 14.7 million acre-feet of water and 597 million pounds active ingredient of nitrogen and phosphorus fertilizers in 1990, and 88 million pounds active ingredient of pesticides in 1991. In addition, the livestock industry contributed 318 million pounds active ingredient of nitrogen and phosphorus from manure in 1987. This report provides the background information to assess the influence of these and other factors on water quality and to provide the foundation for the design and interpretation of all spatial data. These characterizations provide a basis for comparing the influences of human activities among basins and specific land use settings, as well as within and among study units at the national level.

California↗

USGS1996

Aquatic biology of the San Joaquin-Tulare basins, California; analysis of available data through 1992

Available data through 1992 on aquatic biota in the San Joaquin-Tulare Basins study unit of the National Water-Quality Assessment Program were analyzed to provide a conceptual framework to guide study design. The analysis included information on the biology of fish, aquatic macroinvertebrates, aquatic algae, and concentrations of trace elements and organic pesticides in aquatic biota.

Water Supply Paper↗

USGS1995

Comparative ecology of prickly sculpin, Cottus asper, and coastrange sculpin, C. aleuticus, in the Eel River, California

We documented species' distributions, size structure of populations, abundance in mainstem and tributary streams, habitat use, and diets of prickly sculpin, Cottus asper , and coastrange sculpin, C. aleuticus , in the Eel River drainage of California, to determine the processes allowing coexistence of these very similar fishes. We observed prickly sculpins at 43 sites and coastrange sculpins at 34. The species co-occurred at 26 sites. Young-of-year coastrange sculpins were only observed within 42 km of the ocean, but young-of-year prickly sculpins were present throughout the species range. Mean, maximum, and minimum lengths of coastrange sculpins were positively correlated with distance from the ocean but no significant relationships were found for prickly sculpins. Absolute abundance of both species was highest in mainstem habitat (prickly sculpins = 0.6 sculpins m −2 and coastrange sculpins = 0.4 sculpins m −2 ) . Tributary densities of both species tended to be less than 0.1 sculpins m −2 . The species inhabited very similar habitats and had very similar diets. Coastrange sculpin populations in upstream areas were maintained by immigration from downstream areas in contrast with prickly sculpin populations that produced young-of-year fish throughout their range. Densities were probably not high enough for interspecific interactions to be important. The factors limiting the upstream distribution of the species may include high water temperatures, stability of the stream bed, and behavior of the fish. In the past, the range of sculpins within the Eel River drainage probably fluctuated with changing physical conditions. Recent introductions of exotic species that compete with and prey upon sculpins, and ongoing human activities in the drainage could result in major reductions in the distribution and abundance of one or both species.

California↗

USGS1995

Effect of predation by Sacramento squawfish (Ptychocheilus grandis) on habitat choice of California roach (Lavinia symmetricus) and rainbow trout (Oncorhynchus mykiss) in artificial streams

We studied the effects of predatory Sacramento squawfish ( Ptychocheilus grandis ) on habitat choice of juvenile California roach ( Lavinia symmetricus ), adult roach, and juvenile rainbow trout ( Oncorhynchus mykiss ) in artificial streams. In single-prey trials, the proportion of fish found in pool habitat declined in the presence of squawfish for juvenile roach (from 0.55 to 0.00), adult roach (from 0.88 to 0.13), and juvenile rainbow trout (0.70 to 0.15). The presence of squawfish did not affect the use of riffle and edge habitats. Of the fish found in shallow water, the proportion found in edge habitat declined from juvenile roach (0.95) to adult roach (0.80) to juvenile rainbow trout (0.23). We also conducted experiments designed to simulate invasion of an area by squawfish, in which adult roach and juvenile rainbow trout were tested together in the presence and absence of squawfish. The proportion of prey in pool habitat in the presence of squawfish was greater in the two-prey trials than in the single-prey trials for both adult roach (0.31 and 0.13, respectively) and juvenile rainbow trout (0.33 and 0.15, respectively). These results support field evidence that squawfish are an important force in determining the spatial structure of native stream fish assemblages.

California↗

USGS1994

Historical decline and current status of coho salmon in California

The southernmost populations of coho salmon Oncorhynchus kisutch occur in California where native coho stocks have declined or disappeared from all streams in which they were historically recorded. Coho salmon previously occurred in as many as 582 streams, from the Smith River near the Oregon border to the San Lorenzo River on the central coast. Information on the recent presence or absence of coho salmon was available for only 248 (43%) of those streams. Of these 248 streams, 54% still contained coho salmon and 46% did not. The farther south a stream is located, the more likely it is to have lost its coho salmon population. We estimate that the total number of adult coho salmon entering California streams in 1987-1991 averaged around 31,000 fish per year, with hatchery populations making up 57% of this total. Thus, about 13,000 nonhatchery coho salmon have been spawning in California streams each year since 1987, an estimate that includes naturalized stocks containing about 9,000 fish of recent hatchery ancestry. There are now probably less than 5,000 native coho salmon (with no known hatchery ancestry) spawning in California each year, many of them in populations of less than 100 individuals. Coho populations today are probably less than 6% of what they were in the 1940s, and there has been at least a 70% decline since the 1960s. There is every reason to believe that California coho populations, including hatchery stocks, will continue to decline. The reasons for the decline of coho salmon in California include: stream alterations brought about by poor land-use practices (especially those related to logging and urbanization) and by the effects of periodic floods and drought, the breakdown of genetic integrity of native stocks, introduced diseases, overharvest, and climatic change. We believe, that ,coho salmon in California qualify for listing as a threatened species under state law, and certain populations may qualify for listing as threatened or endangered under federal law.

California↗

USGS1994

National Water-Quality Assessment Program: The Sacramento River Basin

In 1991, the U.S. Geological Survey (USGS) began to implement a full-scale National Water-Quality Assessment (NAWQA) program. The long-term goals of the NAWQA program are to describe the status of and trends in the quality of a large, representative part of the Nation's surface- and ground-water resources and to identify the major natural and human factors that affect the quality of those resources. In addressing these goals, the program will provide a wealth of water- quality information that will be useful to policy makers and managers at the national, State, and local levels. A major asset of the NAWQA program is that it will allow for the integration of water-quality information collected at several scales. A major component of the program is the study-unit investigation-the foundation of national- level assessment. The 60 study units of the NAWQA program are hydrologic systems that include parts of most major river basins and aquifer systems of the conterminous United States. These study units cover areas of 1,000 to more than 60,000 square miles and represent 60 to 70 percent of the Nation's water use and population served by public water supplies. Investigations of the first 20 study units began in 1991. In 1994, the Sacramento River Basin was among the second set of 20 NAWQA study units selected for investigation.

Fact Sheet↗

USGS1992

Implications of morphological variation among populations of California roach Lavinia symmetricus (Cyprinidae) for conservation policy

The California roach Lavinia symmetricus is a small cyprinid native to Central California. Populations of roach are presently isolated from one another due to degradation of stream habitats between them. We examined eight populations, each from a tributary system of the San Joaquin River, to determine if morphological differences existed among them. These tributaries are now isolated from one another by dams or areas of unsuitable habitat. We found significant differences among drainages for all of the characters studied. Discriminant analysis classified 70% of the individuals to the correct drainage. The differences were not clinal because adjacent drainages were not grouped together in discriminant space. The most distinct population was as different from a nearby population (36 stream km) as from populations from other more distant tributaries and could possibly merit subspecies status. These results suggest that each population has been isolated long enough to develop morphological adaptions to local environment conditions. With one exception, the differences among the populations were too small for formal taxonomic recognition but suggest that management should focus on preserving local populations throughout the species' range, rather than scattered populations in a few reserves. This policy would serve to protect the genetic diversity of California roach, local aquatic habitats, and other even more poorly known species.

California↗

USGS1991

Seasonal changes in microhabitat selection by rainbow trout in a small stream

Shifts in microhabitat selection by rainbow trout Oncorhynchus mykiss were related to seasonal and ontogenetic factors in a small stream characterized by short riffles, small pools, and boulder substrate. Resource availability did not differ significantly between summer and November sampling dates for most variables related to water velocity, substrate, and cover, although depths were greater and temperatures were significantly lower in November. Ontogenetic shifts were found for total depth, focal elevation, mean water column velocity, focal velocity, surface velocity, and substrate, but not for relative depth or temperature. When microhabitat selection was adjusted for fish size, selection was significantly different between seasons, most notably for velocity. Ontogenetic shifts in microhabitat use by young-of-year rainbow trout were interrupted by cooling winter temperatures. These changes resulted in substantially different microhabitat requirements for all rainbow trout size-classes in different seasons.

Transactions of the American Fisheries Society↗

USGS1989

Spatial, seasonal and diel distribution of fishes in a California reservoir dominated by native fishes

During 21 months of sampling with various techniques, we captured 24 species of fish in Britton Reservoir. Nine species comprised over 96% of the number of fish captured and approximately 88% of the biomass. Five native non-game species accounted for over 77% of the catches. The native non-game fishes have maintained large populations in the reservoir despite continued introductions of non-native species. Two sources of non-native species exist. The first is the introduction of exotic species directly into the reservoir during fish-stocking programs. The second is the continuous movement of non-native fishes into the reservoir from large populations which reside in a major tributary of the reservoir. Factors responsible for the large number of native fishes are: management of the reservoir for hydroelectric generation; temperature regime; reservoir morphology. The fish community structure is stratified along two axes: upper basin/lower basin and inshore/offshore. Most of the 24 species were found inshore: 14 species were found offshore. Four of the native non-game fishes were most abundant in the upper basin: three introduced non-native fishes were most abundant in the lower basin of the reservoir. The offshore community was dynamic on a daily and seasonal basis.

California↗