Geology topics

Kurt C. Heim

Publications and source records attributed to Kurt C. Heim.

11 recordsLinked to original sources

USGS2026

Sex-specific Atlantic salmon upstream passage and fallback at a natural cascade after dam removal

In the Boquet River (NY, USA) a low-head dam set above a ~200-m bedrock cascade was removed in 2015. We used radio-telemetry to assess landlocked Atlantic salmon passage at the remaining cascade (2020, 2022). Across years, 52% of males (13/25) attempted cascade passage whereas females made no discernable attempts (0/11). Attempt probability increased with stream discharge and decreased with fish size, though overall passage success was low (1/36). Shallow depths—likely owing to an artificially widened channel—appear to be limiting passage. Additionally, we transported fish upstream but observed high fallback (72%) that was associated with fish size and energetic status. Following dam removal, this cascade continues to limit upstream passage resulting in increased vulnerability to angling during migratory delay. Overall, we highlight the importance of follow-up studies after dam removal, and that further modifications at this site may be required to improve passage.

New York↗

USGS2025

Spatial variation in landlocked Atlantic Salmon smolt survival associated with dam passage, avian predation, and stocking location

Objective We evaluated survival differences between upstream and downstream stocking for landlocked Atlantic Salmon Salmo salar smolts in a tributary to Lake Champlain. Methods We radio-tagged smolts and stocked them concurrently with 22,000 smolts at two release sites in 2 years. The downstream location (DS, river kilometer 16, no dam passage) was a historically used site in a dam tailrace, whereas the upstream site (US, river kilometer 27, two dams to pass) was in a side channel and stocked for the first time. We estimated survival, counted birds during stocking, and searched nesting colonies for transmitters. Results Within stocking reaches, survival per kilometer for the DS release group was markedly lower than that for the US group (US 2021 and 2022 = 0.98, 0.98, respectively; DS 2021 and 2022 = 0.82, 0.69, respectively). At the DS site, we documented a tenfold increase in avian predators following stocking, whereas no increase was detected at the US site. Passage was >96% at both dams, but postpassage survival (per kilometer) was much lower at the second dam (2021 = 0.78, 2022 = 0.82) compared to the first dam (2021 = 0.96, 2022 = 0.97). Surprisingly, cumulative survival to Lake Champlain was higher for fish that were released upstream in 2022 (US = 43%; DS = 32%) despite dam passage and additional migratory distance. At least 20% (2021) and 7% (2022) of successful migrants were later consumed by birds in the river delta or in Lake Champlain. Conclusions Upstream stocking did not consistently result in lower cumulative survival, likely due to predators habituated to annually reoccurring stocking in a dam tailrace that increased stocking-related mortality at the DS release site. We highlight the importance of evaluating historically used stocking sites, as substantial loss of smolts could be avoided by simple changes to stocking practices. Avian predation was a major source of mortality, necessitating further studies to understand and address survival issues within Lake Champlain.

Vermont↗

USGS2024

Spatial and temporal variability of movements among sympatric salmonids in an unfragmented inland watershed

Objective Our aim was to determine the movement patterns of three abundant salmonids—Brown Trout Salmo trutta , Mountain Whitefish Prosopium williamsoni , and Rainbow Trout Oncorhynchus mykiss —in the Smith River watershed of Montana. Methods We tagged 7172 fish with passive integrated transponder (PIT) tags, monitored their movements past 15 stationary PIT arrays over 4 years, and located tagged fish between arrays by conducting mobile surveys. Result Movement patterns varied seasonally, among species, and among locations. Movement was greatest in the middle portion of the watershed, which included a pristine main‐stem canyon and lower reaches of major tributaries. Fish rarely left the canyon, but movement into the canyon from other regions was common. Mountain Whitefish were most likely to move, and Brown Trout were least likely to move. Most fish travelled less than 10 km, but some fish travelled over 100 km. Distinct movement patterns were not evident; rather, a continuous spectrum of movement behaviors was apparent. Movements by Mountain Whitefish and Rainbow Trout increased during their spawning periods. Movements peaked when mean daily water temperatures were between 11.3 and 17.1°C. Conclusion Movements were diverse and probably contributed to metapopulation dynamics, population resiliency, and species diversity. Fish movements along stream networks connect populations across diverse landscapes, and therefore, protecting and restoring stream connectivity along inland streams such as the Smith River is critical to maintaining productive fish assemblages.

Montana↗

USGS2023

Tagger effects in aquatic telemetry: Short-term and delayed impacts of surgery in Atlantic salmon smolts

Objective An assumption of biotelemetry is that animal performance is unaffected by the tagging process and tag burden, yet this assumption is often untested or not thoroughly explored. Our objective was to explore how transmitter implantation procedures influenced Atlantic Salmon Salmo salar smolt survival and migratory performance. Methods We monitored radio-tagged smolts, first in the hatchery and then in a river with a receiver array. We assessed survival and in-river performance in relation to surgeon, surgery duration, processing order, and fish size. Results Mortality was 13.3% during an 8-day hatchery-observation but was higher for fish processed by one of two experienced surgeons (25% vs. 2%). Mortality peaked three days post-surgery and was higher for smaller fish and fish tagged during morning tagging sessions (compared to afternoons). The size effect changed over time, being greatest during the first two days post-surgery, and continuing thereafter at a diminished level. Fish performance once released into a river also differed between surgeons (migration initiation 66% vs. 82%; and to-lake migration success 22% vs 43%), and consistent with hatchery observations, fish tagged in the morning by one surgeon performed poorly once released. Conclusion We highlight immediate and lingering effects of surgical procedures on smolt survival that, if not accounted for, could bias inferences about the study population. Researchers should anticipate tagger effects during study design to ensure potential tagger effects (i.e., surgeon, order tagged, conditions during tagging) are balanced across study groups of interest. Testing for a fixed tagger effect in analyses may not always be adequate because a tagger effect may covary with processing order and fish size and may change over time.

North American Journal of Fisheries Management↗

USGS2023

Using recovered radio transmitters to estimate positioning error and a generalized Monte Carlo simulation to incorporate error into animal telemetry analysis

Background Mobile radio tracking is an important tool in fisheries research and management. Yet, the accuracy of location estimates can be highly variable across studies and within a given dataset. While some methods are available to deal with error, they generally assume a static value for error across all detections. We provide a novel method for making detection-specific error estimates using detections of recovered transmitters (i.e., mortalities or tag expulsion). These data are used to establish the relationship between received signal strength (RSS) and positional error, which can then be used to predict positional error of detections for fish at large. We then show how detection-specific estimates can be integrated into a Monte Carlo framework to analyze movement in ways robust to spatial uncertainty. Results In a telemetry study in a large river (~ 90 m), we recovered 22 transmitters to estimate and model positional error. Error averaged 94 m (range = 1–727 m) for transmitters tracked by researchers on foot using a Yagi antenna, and 200 m (range = 1–1141 m) for transmitters tracked from vehicles using an omnidirectional whip antenna. Transmitters located near roads were tracked more accurately with both methods. Received signal strength was a strong predictor of positional error ( r 2 = 0.86, ground tracking; 0.65, tracking from truck) and was thus used to make detection-specific estimates of error for detections of fish at large. Monte Carlo analysis for a binary movement classification revealed that only 18% of location estimates could be confidently assigned to movement ( p < 0.05); the remainder were associated with stasis or movement that was within the range of positional error. Ignoring positional error led to positive bias of up to 1300% in individual movement estimates and varied seasonally—it was highest when fish were inactive and lowest when fish were most active. Conclusion Using recovered transmitters and RSS models to estimate telemetry error is a viable alternative to staged ‘dummy transmitter’ trials and assuming error is a constant. Our proposed approaches to incorporate detection-specific error estimates into analysis are broadly applicable and can ‘make the most’ out of highly accurate detections while also cautiously extracting spatial information from less-accurate detections.

Animal Biotelemetry↗

USGS2022

Attraction, entrance, and passage efficiency of Arctic Grayling, trout, and suckers at Denil fishways in the Big Hole River basin, Montana

The Big Hole River basin in southwestern Montana supports the only indigenous, self‐sustaining fluvial population of Arctic Grayling Thymallus arcticus in the conterminous United States, but the basin is fragmented by numerous low‐head irrigation diversion dams. Denil fishways at 63 diversion dams provide Arctic Grayling and other fishes opportunities for year‐round access to critical habitats; however, their efficiency has not been evaluated. We quantified attraction, entrance, and passage for hatchery‐reared Arctic Grayling, wild trout (Brook Trout Salvelinus fontinalis and Brown Trout Salmo trutta ), and wild suckers (White Sucker Catostomus commersonii and Longnose Sucker C. catostomus ) during 14 field trials conducted at six Denil fishways over a representative range of fishway slopes and hydraulic conditions using passive integrated transponder telemetry. Attraction (60.4–84.3%) and entrance (44.3–78.6%) efficiencies were variable across test conditions and reduced overall fishway efficiencies (19.1–55.8%). In contrast, upon entry, passage efficiencies were high (96.2–97.0%) for all taxa across all test conditions. Attraction of hatchery‐reared Arctic Grayling increased with upstream depth (a surrogate for fishway discharge) and attraction flow, but attraction of wild fish was less affected by these conditions. Entrance of Arctic Grayling, Brook Trout, and Brown Trout decreased with upstream depth and fishway slope, especially when plunging entrance conditions associated with shallow downstream depths were present. However, entrance of Arctic Grayling and both trout species increased with downstream depth, and submerged fishway entrances demonstrated promise for increasing entrance efficiency at fishways with high discharges and steep slopes. We demonstrate that comprehensive evaluations of fishway efficiency components can identify specific solutions that improve fishway efficiency; application of these engineering solutions at individual fishways (as needed) could improve their efficiency and further enhance aquatic connectivity for fishes in the Big Hole River basin and elsewhere.

Montana↗

USGS2019

Creating figures in R that meet the AFS style guide: Standardization and supporting script

Visual display of information in scientific and non‐scientific literature is the most efficient way to summarize large amounts data, focus the readers’ attention on patterns, and substantiate the message in the narrative. Figures often represent years of data collection and substantial monetary investment, and it is worth repeating the cliché “a [figure] is worth a thousand words.” Well‐designed figures are usually simple, yet their ability to relate complex information through simplicity makes them powerful (Tufte 2001 ). Figures are often the focal point of articles when scientists, science communicators, and policy makers are quickly searching for scientific information. Scientists in academia ranked figures and tables as the most important component of research articles (Hubbard and Dunbar 2017 ); moreover, figures quickly become the focus when discussing articles among colleagues or in a classroom setting. If created effectively in combination with a well‐articulated figure caption, figures convey complex information readily for the reader to make a conclusion about results without reading details presented in the narrative. This is especially important as the quantity of research articles continues to increase exponentially in the 21st century, as does the number of journals with specific figure guidelines (Jinha 2010 ).

Fisheries Magazine↗

USGS2019

A general model of temporary aquatic habitat use: Water phenology as a life history filter

Temporary aquatic habitats are not widely appreciated fish habitat. However, fish navigate the transient waters of intertidal zones, floodplains, intermittent and ephemeral streams, lake margins, seasonally frozen lakes and streams, and anthropogenic aquatic habitats across the globe to access important resources. The selective pressures imposed by water impermanence (i.e., freezing, drying, tidal fluctuations), however, operate similarly across taxa and ecosystems. These similarities are formalized into a conceptual model relating habitat use to surface water phenology. Whereas all necessary life history functions (spawning, foraging, refuge, and dispersal) can be accomplished in temporary habitats, the timing, duration, and predictability of water act as a “life history filter” to which habitats can be used and for what purpose. Habitats wet from minutes to months may all be important—albeit in different ways, for different species. If life history needs co-occur with accessibility, temporary habitats can contribute substantially to individual fitness, overall production and important metapopulation processes. This heuristic is intended to promote research, recognition and conservation of these frequently overlooked habitats that can be disproportionately important relative to their size or brevity of existence. There is a pressing need to quantify how use of temporary aquatic habitats translates to individual fitness benefits, population size and temporal stability, and ecosystem-level consequences. Temporary aquatic habitats are being impacted at an alarming rate by anthropogenic activities altering their existence, phenology, and connectivity. It is timely that scientists, managers and policymakers consider the role these habitats play in global fish production.

Fish and Fisheries↗

USGS2015

Seasonal cues of Arctic grayling movement in a small Arctic stream: the importance of surface water connectivity

In Arctic ecosystems, freshwater fish migrate seasonally between productive shallow water habitats that freeze in winter and deep overwinter refuge in rivers and lakes. How these movements relate to seasonal hydrology is not well understood. We used passive integrated transponder tags and stream wide antennae to track 1035 Arctic grayling in Crea Creek, a seasonally flowing beaded stream on the Arctic Coastal Plain, Alaska. Migration of juvenile and adult fish into Crea Creek peaked in June immediately after ice break-up in the stream. Fish that entered the stream during periods of high flow and cold stream temperature traveled farther upstream than those entering during periods of lower flow and warmer temperature. We used generalized linear models to relate migration of adult and juvenile fish out of Crea Creek to hydrology. Most adults migrated in late June – early July, and there was best support (Akaike weight = 0.46; w i ) for a model indicating that the rate of migration increased with decreasing discharge. Juvenile migration occurred in two peaks; the early peak consisted of larger juveniles and coincided with adult migration, while the later peak occurred shortly before freeze-up in September and included smaller juveniles. A model that included discharge, minimum stream temperature, year, season, and mean size of potential migrants was most strongly supported ( w i = 0.86). Juvenile migration rate increased sharply as daily minimum stream temperature decreased, suggesting fish respond to impending freeze-up. We found fish movements to be intimately tied to the strong seasonality of discharge and temperature, and demonstrate the importance of small stream connectivity for migratory Arctic grayling during the entire open-water period. The ongoing and anticipated effects of climate change and petroleum development on Arctic hydrology (e.g. reduced stream connectivity, earlier peak flows, increased evapotranspiration) have important implications for Arctic freshwater ecosystems.

Alaska↗

USGS2015

Distribution and biophysical processes of beaded streams in Arctic permafrost landscapes

Beaded streams are widespread in permafrost regions and are considered a common thermokarst landform. However, little is known about their distribution, how and under what conditions they form, and how their intriguing morphology translates to ecosystem functions and habitat. Here we report on a Circum-Arctic survey of beaded streams and a watershed-scale analysis in northern Alaska using remote sensing and field studies. We mapped over 400 channel networks with beaded morphology throughout the continuous permafrost zone of northern Alaska, Canada, and Russia and found the highest abundance associated with medium- to high- ground ice content permafrost in moderately sloping terrain. In the Fish Creek watershed, beaded streams accounted for half of the drainage density, occurring primarily as low-order channels initiating from lakes and drained lake basins. Beaded streams predictably transition to alluvial channels with increasing drainage area and decreasing channel slope, although this transition is modified by local controls on water and sediment delivery. Comparison of one beaded channel using repeat photography between 1948 and 2013 indicate a relatively stable landform and 14C dating of basal sediments suggest channel formation may be as early as the Pleistocene-Holocene transition. Contemporary processes, such as deep snow accumulation in riparian zones effectively insulates channel ice and allows for perennial liquid water below most beaded stream pools. Because of this, mean annual temperatures in pool beds are greater than 2°C, leading to the development of perennial thaw bulbs or taliks underlying these thermokarst features. In the summer, some pools thermally stratify, which reduces permafrost thaw and maintains coldwater habitats. Snowmelt generated peak-flows decrease rapidly by two or more orders of magnitude to summer low flows with slow reach-scale velocity distributions ranging from 0.1 to 0.01 m/s, yet channel runs still move water rapidly between pools. The repeating spatial pattern associated with beaded stream morphology and hydrological dynamics may provide abundant and optimal foraging habitat for fish. Thus, beaded streams may create important ecosystem functions and habitat in many permafrost landscapes and their distribution and dynamics are only beginning to be recognized in Arctic research.

Alaska↗

USGS2014

Body size and condition influence migration timing of juvenile Arctic grayling

Freshwater fishes utilising seasonally available habitats within annual migratory circuits time movements out of such habitats with changing hydrology, although individual attributes of fish may also mediate the behavioural response to environmental conditions. We tagged juvenile Arctic grayling in a seasonally flowing stream on the Arctic Coastal Plain in Alaska and recorded migration timing towards overwintering habitat. We examined the relationship between individual migration date, and fork length (FL) and body condition index (BCI) for fish tagged in June, July and August in three separate models. Larger fish migrated earlier; however, only the August model suggested a significant relationship with BCI. In this model, 42% of variability in migration timing was explained by FL and BCI, and fish in better condition were predicted to migrate earlier than those in poor condition. Here, the majority (33%) of variability was captured by FL with an additional 9% attributable to BCI. We also noted strong seasonal trends in BCI reflecting overwinter mass loss and subsequent growth within the study area. These results are interpreted in the context of size and energetic state-specific risks of overwinter starvation and mortality (which can be very high in the Arctic), which may influence individuals at greater risk to extend summer foraging in a risky, yet prey rich, habitat. Our research provides further evidence that heterogeneity among individuals within a population can influence migratory behaviour and identifies potential risks to late season migrants in Arctic beaded stream habitats influenced by climate change and petroleum development.

Alaska↗