Geology topics

Jonathan M. Nelson

Publications and source records attributed to Jonathan M. Nelson.

At least 19 recordsLinked to original sources

USGS2022

Sediment monitoring and streamflow modeling before and after a stream restoration in Rice Creek, Minnesota, 2010–2019

The Rice Creek Watershed District (RCWD) cooperated with the U.S. Geological Survey to establish a 10-year suspended sediment and bedload monitoring and streamflow modeling study to evaluate the effects of two restored meander sections on middle Rice Creek in Arden Hills, Minnesota. The RCWD goals of this stream restoration were to reduce water quality impairments, improve aquatic habitat, and reduce associated costs of dredging a sedimentation pond. During the study there were several factors that introduced uncertainty in the sampling results; however, the sampling results indicated there was an increase in the post-stream restoration sediment data because of higher streamflows during the post-stream than the pre-stream restoration monitoring period. The negative relation between suspended fines and streamflow was explained by a reduction in the supply of fines with increasing streamflows. The positive relation among suspended sand, bedload, and streamflow was because of those constituents having a functional relation with the hydraulic properties of flow and a consistent supply of sand. Two-dimensional flow modeling simulations indicated the downstream restored section had less shear stress, more pools, and could access the floodplain at a lower streamflow than the original channel. Overall, the uncertainty of the sampling results indicates the complexity of sediment transport in a river and suggests a need for multisite, multifaceted, multiyear data, and tools to simulate those data to effectively evaluate river restorations.

Minnesota↗

USGS2020

A Lagrangian particle-tracking approach to modelling larval drift in rivers

The migration of larval fish from spawning to rearing habitat in rivers is not well understood. This paper describes a methodology to predict larval drift using a Lagrangian particle-tracking (LPT) model with passive and active behavioural components loosely coupled to a quasi-three-dimensional hydraulic model. In the absence of measured larval drift, a heuristic approach is presented for the larval drift of two species of interest, white sturgeon ( Acipenser transmontanus ) and burbot ( Lota lota ), in the Kootenai River, Idaho. Previous studies found that many fish species prefer certain vertical zones within the water column; sturgeon tend to be found near the bottom and burbot close to the water surface. Limiting the vertical movement of larvae is incorporated into the active component of the LPT model. The results illustrate a pattern of drift where secondary flow in meander bends and other zones of flow curvature redistributes particles toward the outside of the bend for surface drifters and toward the inside of the bend for bottom drifters. This pattern periodically reinforces the intersection of drifting larvae with channel margins in meander bends. In the absence of measured larval drift data, the model provides a tool for hypothesis testing and a guide to both field and laboratory experiments to further define the role of active behaviour in drifting larvae.

Idaho↗

USGS2020

An experimental study of longitudinal incisional grooves in a mixed bedrock-alluvial channel

Natural bedrock rivers have various bedforms created by erosion. Flow‐parallel incisional grooves formed longitudinally in bedrock are one common example of such bedforms. Although several studies have been conducted regarding these grooves, their formation processes are not well understood. In this study, we conducted a flume experiment to investigate the relationship between the flow structure and longitudinal grooves. The experimental results strongly suggest that longitudinal grooves are formed by moving sediment concentrated in multiple longitudinal pathways by turbulence‐driven secondary flows. The sediment preferentially abrades the bedrock along these flow‐parallel pathways resulting in longitudinal grooves in the bedrock. Measurements of the flow velocity distribution show that the positions of secondary flow cells producing the initial formation of the grooves are altered by the formation of those grooves. Because displaced secondary flows tend to make the sediment collide with the sidewalls of the longitudinal grooves, the grooves grow wider over time and some grooves partially combine with other adjacent grooves. The initial maximum number of longitudinal grooves N max strongly depends on the river width‐depth ratio B / D , which defines the number of secondary flow cells, and can be expressed as N max = 0.5 B / D . However, because some grooves coalesce with other grooves due to the effects of the displacement of secondary flows, the average number of grooves showed a relationship that can be expressed as N = 0.41 B / D . Based on this relationship, we inversely estimated the flow discharge of the Abashiri River using the number of longitudinal grooves observed in the river. The result was consistent with the observed annual maximum flow discharge of the river. This suggests that the number of longitudinal grooves can be used as an indicator for estimation of the formative flow discharge in bedrock rivers.

Water Resources Research↗

USGS2019

Remote sensing of tracer dye concentrations to support dispersion studies in river channels

In river channels the flow field influences the dispersion of biota, contaminants, and other suspended or dissolved materials. Insight on patterns and rates of dispersion can be gained by injecting a pulse of visible dye and observing spatial and temporal variations in dye concentration as the pulse moves downstream. We evaluated the potential of passive optical remote sensing to enhance such tracer experiments by providing spatially distributed concentration information. During tests performed in both an experimental flume facility and a large natural channel, we made field measurements of Rhodamine WT dye concentration and above-water spectral reflectance. At Korea's River Experiment Center, a small unmanned aircraft system (sUAS) was used to acquire hyperspectral images of a sinuous outdoor flume. On the Kootenai River in northern Idaho, USA, field spectra were collected from a boat and hyperspectral image data and high resolution aerial photographs were obtained from manned aircraft. We modified an Optimal Band Ratio Analysis (OBRA) algorithm to identify wavelength combinations that yielded strong correlations between a spectrally based quantity X and dye concentration C. For both the flume and field tests, we obtained very strong (R^2 from 0.94 to 0.99) relationships between X and C across a broad range of visible wavelengths. On the Kootenai, we found that X vs. C relations derived from field spectra could be applied to airborne hyperspectral images and that dye concentrations could be estimated nearly as reliably from relatively simple three-band images as from hyperspectral data. These results imply that remote sensing could become a powerful tool for mapping dye patterns. Such a capability would advance our understanding of dispersion processes by enabling more rigorous testing of numerical flow models.

Journal of Ecohydraulics↗

USGS2019

Morphological computation of dune evolution with equilibrium and non-equilibrium sediment-transport models

This paper presents an exploratory study that comprises the implementation and comparison of different approaches and parameterization of sediment transport mechanisms in a process-based morphological model for simulating river dunes. The purpose of this study was to assess the underlying physical processes associated with sediment transport and dune evolution simulated by the model with two different bedload transport models: a non-equilibrium approach considering saltation distance and an equilibrium approach with the incorporation of the effect of the local bed slope. The advancement of this study is that it comprised detailed analysis of the bed shear stress and sediment transport over a dune during time varying flows, comparing both transport models and revealing distinctive transient features of bedload transport and dune evolution. We also improved a non-equilibrium transport model by incorporating a formulation for sediment saltation distance as a length-scale. Using both sediment transport approaches, the morphological model was applied to replicate a large-scale field experiment. Notably, the model yielded the quasi-equilibrium dune feature reasonably well using either sediment-transport formulation. However, detailed analysis of simulated spatial and temporal features of sediment transport and the dune evolution process were found to be noticeably different. Even though both sediment transport mechanisms appear to work adequately at a basic level, the major difference between the two approaches is the underlying transport process over the dunes and time-scale of the dune evolution process.

Water Resources Research↗

USGS2019

Advances in computational morphodynamics using the International River Interface Cooperative (iRIC) software

Results from computational morphodynamics modeling of coupled flow-bed-sediment systems are described for ten applications as a review of recent advances in the field. Each of these applications is drawn from solvers included in the public-domain International River Interface Cooperative (iRIC) software package. For mesoscale river features such as bars, predictions of alternate and higher mode river bars are shown for flows with equilibrium sediment supply and for a single case of oversupplied sediment. For microscale bed features such as bedforms, computational results are shown for the development and evolution of two-dimensional bedforms using a simple closure-based two-dimensional model, for two- and three-dimensional ripples and dunes using a three-dimensional large-eddy simulation flow model coupled to a physics-based particle transport model, and for the development of bed streaks using a three-dimensional unsteady Reynolds-averaged Navier-Stokes solver with a simple sediment-transport treatment. Finally, macroscale or channel evolution treatments are used to examine the temporal development of meandering channels, a failure model for cantilevered banks, the effect of bank vegetation on channel width, the development of channel networks in tidal systems, and the evolution of bedrock channels. In all examples, computational morphodynamics results from iRIC solvers are shown to compare well to observations of natural bed morphology. For each of the three scales investigated here, brief suggestions for future work and potential research directions are offered.

Earth Surface Processes and Landforms↗

USGS2019

UAV-based measurements of spatio-temporal concentration distributions of fluorescent tracers in open channel flows

A new method of unmanned aerial vehicle (UAV)-based tracer tests using RGB (red, green, blue) images was developed in order to acquire the spatio-temporal concentration distribution of tracer clouds in open channel flows. Tracer tests using Rhodamine WT were conducted to collect the RGB images using a commercial digital camera mounted on a UAV, and the concentration of Rhodamine WT using in-situ fluorometric probes. The correlation analysis showed that the in-situ measured concentrations of Rhodamine WT were strongly correlated with the digital number ( DN ) of the RGB images, even though the response of DN to the concentration was spatially heterogeneous. The empirical relationship between the DN values and the Rhodamine WT concentration data was estimated using artificial neural network (ANN) models. The trained ANN models, which consider the effect of water depth and river bed, accurately retrieved the detailed spatio-temporal concentration distributions of all study areas that had an R 2 higher than 0.9. The acquired spatio-temporal concentration distributions by the proposed method based on the UAV images gave general as well as detailed views of the tracer cloud moving dynamically in open channel flows that cannot be easily observed using conventional in-situ measurements.

Advances in Water Resources↗

USGS2019

Near-field remote sensing of Alaskan Rivers

The U.S. Geological Survey (USGS) Geomorphology and Sediment Transport Laboratory (GSTL), in collaboration with the U.S. Army Corps of Engineers Cold Regions Research and Engineering Laboratory (CRREL), acquired remotely sensed data from several Alaskan rivers in 2017 and 2018 with the goal of developing a methodology for measuring streamflow from a helicopter. CRREL operates a custom airborne lidar system that can be deployed in a helicopter-based pod (HeliPod). Data were collected with the HeliPod near existing USGS streamflow information stations on the Knik, Matanuska, Chena, and Salcha Rivers in both 2017 and 2018. Sites on the Tanana and Snow Rivers were added in 2018. In 2018, the HeliPod was modified to accommodate both a thermal infrared and a visible camera. The cameras were integrated with the flight management software to simultaneously acquire imagery with lidar. The Global Navigation Satellite System (GNSS) and inertial measurement unit (IMU) in the HeliPod were used to compute trajectories with precise position and orientation information needed for image orthorectification. The HeliPod sensors provide data for measuring river channel characteristics. Lidar can map the elevation of the water surface and thus be used to measure water-surface slopes and return intensity can be used to delineate the extent of the wetted river channel. Various approaches are currently being evaluated to estimate surface flow velocity from visible and thermal image time series. In this paper, we examine and compare water-surface elevation returns and slopes derived from the HeliPod lidar and found good agreement with measurements made using conventional field-based techniques.

Alaska↗

USGS2018

Consequences of abrading bed load on vertical and lateral bedrock erosion in a curved experimental channel

In this study, we conducted multiple physical experiments to estimate the efficacy and spatial pattern of erosion by abrading sediment moving through a simple U‐shaped channel bend with erodible bed and banks. The experiments showed that in the bend, lateral abrasion followed a monotonically increasing linear relationship with sediment feed rate. However, vertical incision had a more complex relation with the sediment feed rate, with an initial increase in abrasion as the feed rate increased followed by a decrease in abrasion of the bed as cover effects became dominant at higher feed rates. Bank erosion was large in places where the width and the lateral slope of the point bar were relatively large. On the other hand, in places where the width of the point bar was smaller, the bedrock bed was eroded primarily along the boundary of the point bar, resulting in a bedrock bench near the outer bank.

Shimanto River↗

USGS2018

New methods for predicting and measuring dispersion in rivers

To develop a better predictive tool for dispersion in rivers over a range of temporal and spatial scales, our group has developed a simple Lagrangian model that is applicable for a wide range of coordinate systems and flow modeling methodologies. The approach allows dispersion computations for a large suite of discretizations, model dimensions (1-, 2-, or 3-dimensional), spatial and temporal discretization, and turbulence closures. As the model is based on a discrete non-interacting particle approach, parallelization is straightforward, such that simulations with large numbers of particles are tractable. Results from the approach are compared to dispersion measurements made with conventional Rhodamine WT dye experiment in which typical at-a-point sensors are employed to determine concentration. The model performs well, but spatial resolution for experiments over large and or complex river flows was inadequate for model testing. To address this issue, we explored the idea of measuring spatial concentrations in river flows using hyperspectral remote sensing. Experiments both for idealized channels and real rivers show that this technique is viable and can provide high levels of spatial detail in concentration measurements with quantitatively accurate concentrations.

Conference Paper↗

USGS2018

Fine-scale habitat preference of green sturgeon (Acipenser medirostris) within three spawning locations in the Sacramento River, California

Vast sections of the Sacramento River have been listed as critical habitat by the National Marine Fisheries Service for green sturgeon spawning ( Acipenser medirostris ), yet spawning is known to occur at only a few specific locations. This study reveals the range of physical habitat variables selected by adult green sturgeon during their spawning period. We integrated fine-scale fish positions, physical habitat characteristics, discharge, bathymetry, and simulated velocity and depth using a 2-dimensional hydraulic model (FaSTMECH). The objective was to create habitat suitability curves for depth, velocity, and substrate type within three known spawning locations over two years. An overall cumulative habitat suitability score was calculated that averaged the depth, velocity, and substrate scores over all fish, sites, and years. A weighted usable area (WUA) index was calculated throughout the sampling periods for each of the three sites. Cumulative results indicate that the microhabitat characteristics most preferred by green sturgeon in these three spawning locations were velocities between 1.0-1.1 m/s, depths of 8-9 m, and gravel and sand substrate. This study provides guidance for those who may in the future want to increase spawning habitat for green sturgeon within the Sacramento River.

California↗

USGS2017

Estimating floodwater depths from flood inundation maps and topography

Information on flood inundation extent is important for understanding societal exposure, water storage volumes, flood wave attenuation, future flood hazard, and other variables. A number of organizations now provide flood inundation maps based on satellite remote sensing. These data products can efficiently and accurately provide the areal extent of a flood event, but do not provide floodwater depth, an important attribute for first responders and damage assessment. Here we present a new methodology and a GIS-based tool, the Floodwater Depth Estimation Tool (FwDET), for estimating floodwater depth based solely on an inundation map and a digital elevation model (DEM). We compare the FwDET results against water depth maps derived from hydraulic simulation of two flood events, a large-scale event for which we use medium resolution input layer (10 m) and a small-scale event for which we use a high-resolution (LiDAR; 1 m) input. Further testing is performed for two inundation maps with a number of challenging features that include a narrow valley, a large reservoir, and an urban setting. The results show FwDET can accurately calculate floodwater depth for diverse flooding scenarios but also leads to considerable bias in locations where the inundation extent does not align well with the DEM. In these locations, manual adjustment or higher spatial resolution input is required.

Journal of the American Water Resources Associatio↗

USGS2017

Numerical simulation of large-scale bed load particle tracer advection-dispersion in rivers with free bars

Asymptotic characteristics of the transport of bed load tracer particles in rivers have been described by advection-dispersion equations. Here we perform numerical simulations designed to study the role of free bars, and more specifically single-row alternate bars, on streamwise tracer particle dispersion. In treating the conservation of tracer particle mass, we use two alternative formulations for the Exner equation of sediment mass conservation: the flux-based formulation, in which bed elevation varies with the divergence of the bed load transport rate, and the entrainment-based formulation, in which bed elevation changes with the net deposition rate. Under the condition of no net bed aggradation/degradation, a 1-D flux-based deterministic model that does not describe free bars yields no streamwise dispersion. The entrainment-based 1-D formulation, on the other hand, models stochasticity via the probability density function (PDF) of particle step length, and as a result does show tracer dispersion. When the formulation is generalized to 2-D to include free alternate bars, however, both models yield almost identical asymptotic advection-dispersion characteristics, in which streamwise dispersion is dominated by randomness inherent in free bar morphodynamics. This randomness can result in a heavy-tailed PDF of waiting time. In addition, migrating bars may constrain the travel distance through temporary burial, causing a thin-tailed PDF of travel distance. The superdiffusive character of streamwise particle dispersion predicted by the model is attributable to the interaction of these two effects.

Journal of Geophysical Research F: Earth Surface↗

USGS2017

The effect of wet-dry weathering on the rate of bedrock river channel erosion by saltating gravel

Previous work has shown that the bedrock erosion rate E because of collisions of saltating bedload can be expressed by E = βq b (1- P c ), where q b is the sediment transport rate, P c is the extent of alluvial cover, and β is the abrasion coefficient. However, the dependence of the abrasion coefficient on the physical characteristics of the bedrock material is poorly known, and in particular, the effects of wet-dry weathering on the saltation-abrasion bedrock incision has not been specifically characterized. Observation suggests that the typical wet-dry cycling of exposed bedrock in river beds gives rise to cracks and voids that are likely to alter the incision rate of the material when subjected to impacts of moving sediment. In this study, flume experiments are performed to develop an understanding of how wet-dry cycling affects the rock tensile strength and the bedrock erosion rate. To represent the physical effects of weathering, boring cores taken from natural bedrock channel are exposed to artificial wet-dry cycles. The experimental results suggest the following: (1) the abrasion coefficient for fresh bedrock is estimated by β = 1.0 × 10 − 4 σ T − 2 ( d / k sb ) 0.5 , where σ T is the tensile strength, d is the diameter of colliding gravel, and k sb is the hydraulic roughness height of bedrock; (2) the tensile strength of the bedrock decreases exponentially as a result of repeated wet-dry cycles, σ T /σ T 0 = exp (- C T NW a 0 /σ T 0 ), where σ T 0 is the initial tensile strength, W a 0 is the initial normalized rate of water absorption., N is the number of wet-dry cycles, and C T is a constant; (3) the erosion rate of fresh bedrock depends on the inverse of the square of tensile strength, but the erosion rate of weathered bedrock depends on the − 1.5 power of tensile strength.

Geomorphology↗

USGS2017

Remote measurement of river discharge using thermal particle image velocimetry (PIV) and various sources of bathymetric information

Although river discharge is a fundamental hydrologic quantity, conventional methods of streamgaging are impractical, expensive, and potentially dangerous in remote locations. This study evaluated the potential for measuring discharge via various forms of remote sensing, primarily thermal imaging of flow velocities but also spectrally-based depth retrieval from passive optical image data. We acquired thermal image time series from bridges spanning five streams in Alaska and observed strong agreement between velocities measured in situ and those inferred by Particle Image Velocimetry (PIV), which quantified advection of thermal features by the flow. The resulting surface velocities were converted to depth-averaged velocities by applying site-specific, calibrated velocity indices. Field spectra from three clear-flowing streams provided strong relationships between depth and reflectance, suggesting that, under favorable conditions, spectrally-based bathymetric mapping could complement thermal PIV in a hybrid approach to remote sensing of river discharge; this strategy would not be applicable to larger, more turbid rivers, however. A more flexible and efficient alternative might involve inferring depth from thermal data based on relationships between depth and integral length scales of turbulent fluctuations in temperature, captured as variations in image brightness. We observed moderately strong correlations for a site-aggregated data set that reduced station-to-station variability but encompassed a broad range of depths. Discharges calculated using thermal PIV-derived velocities were within 15% of in situ measurements when combined with depths measured directly in the field or estimated from field spectra and within 40% when the depth information also was derived from thermal images. The results of this initial, proof-of-concept investigation suggest that remote sensing techniques could facilitate measurement of river discharge.

Journal of Hydrology↗

USGS2017

Modeling hydraulic and sediment transport processes in white sturgeon spawning habitat on the Kootenai River, Idaho

The Kootenai River white sturgeon currently spawn (2005) in an 18-kilometer reach of the Kootenai River, Idaho. Since completion of Libby Dam upstream from the spawning reach, there has been only one successful year of recruitment of juvenile fish. Where successful in other rivers, white sturgeon spawn over clean coarse material of gravel size or larger. The channel substrate in the current spawning reach is composed primarily of sand and some buried gravel; within a few kilometers upstream there is clean gravel. We used a 2-dimensional flow and sediment-transport model and the measured locations of sturgeon spawning from 1994-2002 to gain insight into the paradox between the current spawning location and the absence of suitable substrate. Spatial correlations between spawning locations and the model simulations of velocity and depth indicate the white sturgeon tend to select regions of highest velocity and depth within any river cross-section to spawn. These regions of high velocity and depth are independent of pre- or post-dam flow conditions. A simple sediment-transport simulation suggests that high discharge and relatively long duration flow associated with pre-dam flow events might be sufficient to scour the sandy substrate and expose existing lenses of gravel and cobble as lag deposits in the current spawning reach.

Idaho↗

USGS2017

Effect of sediment supply and flow rate on the initiation and topographic evolution of sandbars in laboratory and numerical channels

The evolution of barforms from a bed of uniform sediment and changes in sediment storage were measured in a laboratory flume and simulated numerically. Flume experiments were conducted with several upstream sediment supplies and flow conditions. For the sediment supply rates (no upstream supply, equilibrium supply, and 133, 166, and 200 percent of the equilibrium supply) and flow rates examined, the plane bed tended to evolve into mid-channel bars early in the runs ~15 minutes. As the flume experiments progressed, the bed transitioned to a lower mode configuration of alternate bars or a single-thread meandering thalweg. Increasing the upstream sediment supply to 133 percent or more of the equilibrium rate, increased the height and volume of deposited sediment relative to experiments conducted at the equilibrium rate and those experiments without sediment supply. Experiments conducted at flow rates of 0.5 and 1.0 L/s without sediment supply demonstrated that an increase in flow corresponded to a greater volume of erosion. A coupled two-dimensional flow and sediment transport model, Nays2DH, was used to simulate the evolution of bed topography for three sediment supply rates. We compared the morphodynamics and sediment storage predicted by Nays2DH for two initial bed conditions: one set of calculations used a plane bed with a small upstream perturbation as the initial bed condition, and the other set used the bed topography measured 15 minutes after the start of the flume run. Whereas initializing the model with measured flume topography provided a somewhat better analog to the final evolved morphology, predictions of sedimentation were not substantially improved over simulations using the plane bed as the initial condition.

Conference Paper↗

USGS2017

Using remotely sensed data to estimate river characteristics including water-surface velocity and discharge

This paper describes a project combining field studies and analyses directed at providing an assessment of the accuracy of remotely sensed methods for determining river characteristics such as velocity and discharge. In particular, we describe a remote sensing method for surface velocities using mid-wave thermal camera videography combined with image analysis. One of the critical problems in this work is determining a method for relating remotely measured water-surface velocities to vertically averaged velocities through a velocity index. We explore three similarity profiles that allow a relationship between surface and vertically averaged velocity to be found either using empirical results or simple roughness-to-depth ratios. To test the approaches we compare them in a situation where vertical structure is known over most of the flow depth through ADCP measurements. By determining best-fit profiles through the ADCP profiles, average values of the velocity index are found for the cross-sections where measurement were made. By comparing these to the predicted velocity indices from the three similarity profiles, we find that, although the differences between the various similarity profiles are substantial, they are smaller than differences associated with local nonuniformity and nonhydrostatic flow. Nevertheless, the velocity indices are accurate to about +/-5%, meaning that remotely sensed vertically averaged velocities can be computed to well within the current accuracy standard for such values when used for river gaging.

Conference Paper↗