Geology topics

John P. McLaughlin

Publications and source records attributed to John P. McLaughlin.

11 recordsLinked to original sources

USGS2022

Transforming Palmyra Atoll to native-tree dominance will increase net carbon storage and reduce dissolved organic carbon reef runoff

Native forests on tropical islands have been displaced by non-native species, leading to calls for their transformation. Simultaneously, there is increasing recognition that tropical forests can help sequester carbon that would otherwise enter the atmosphere. However, it is unclear if native forests sequester more or less carbon than human-altered landscapes. At Palmyra Atoll, efforts are underway to transform the rainforest composition from coconut palm ( Cocos nucifera ) dominated to native mixed-species. To better understand how this landscape-level change will alter the atoll’s carbon dynamics, we used field sampling, remote sensing, and parameter estimates from the literature to model the total carbon accumulation potential of Palmyra’s forest before and after transformation. The model predicted that replacing the C . nucifera plantation with native species would reduce aboveground biomass from 692.6 to 433.3 Mg C. However, expansion of the native Pisonia grandis and Heliotropium foertherianum forest community projected an increase in soil carbon to at least 13,590.8 Mg C, thereby increasing the atoll’s overall terrestrial carbon storage potential by 11.6%. Nearshore sites adjacent to C . nucifera canopy had a higher dissolved organic carbon (DOC) concentration (110.0 μMC) than sites adjacent to native forest (81.5 μMC), suggesting that, in conjunction with an increase in terrestrial carbon storage, replacing C . nucifera with native forest will reduce the DOC exported from the forest into in nearshore marine habitats. Lower DOC levels have potential benefits for corals and coral dependent communities. For tropical islands like Palmyra, reverting from C . nucifera dominance to native tree dominance could buffer projected climate change impacts by increasing carbon storage and reducing coral disease.

PLoS ONE↗

USGS2020

At Palmyra Atoll, the fish‐community environmental DNA signal changes across habitats but not with tides

At Palmyra Atoll, the environmental DNA (eDNA) signal on tidal sand flats was associated with fish biomass density and captured 98%–100% of the expected species diversity there. Although eDNA spilled over across habitats, species associated with reef habitat contributed more eDNA to reef sites than to sand‐flat sites, and species associated with sand‐flat habitat contributed more eDNA to sand‐flat sites than to reef sites. Tides did not disrupt the sand‐flat habitat signal. At least 25 samples give a coverage >97.5% at this diverse, tropical, marine system.

Journal of Fish Biology↗

USGS2020

Parasites in marine food webs

Parasites have important and unique impacts on marine food webs. By infecting taxa across all trophic levels, parasites affect both bottom-up and top-down processes in marine systems. When host densities are high enough, parasites can regulate or even decimate their populations, causing regime shifts in marine systems. As consumers and resources, parasites are enmeshed in food webs in ways that are different from free-living species. Their unique lifestyle renders parasites more susceptible to perturbations than their free-living hosts. As a result, parasites serve as useful indicators of ecosystem integrity. A theory for how food webs affect parasites will help us better understand why a particular infectious disease has become problematic, give insight into how restoration might reduce a costly marine disease, or let us use parasites as indicators to follow changes in food-web complexity.

Book chapter↗

USGS2019

Parasitic nematodes of marine fishes from Palmyra Atoll, East Indo-Pacific, including a new species of Spinitectus (Nematoda, Cystidicolidae)

Here, we present the results of a taxonomic survey of the nematodes parasitizing fishes from the lagoon flats of Palmyra Atoll, Eastern Indo-Pacific. We performed quantitative parasitological surveys of 653 individual fish from each of the 44 species using the intertidal sand flats that border the atoll’s lagoon. We provide morphological descriptions, prevalence, and mean intensities of the recovered seven species of adult nematode ( Pulchrascaris chiloscyllii , Capillariidae gen. sp., Cucullanus bourdini, Cucullanus oceaniensis, Pseudascarophis sp., Spinitectus (Paraspinitectus) palmyraensis sp. nov., Philometra pellucida ) and three larval stages ( Pulchrascaris sp., Hysterothylacium sp., Cucullanus sp.). We recorded: Pulchrascaris chiloscyllii from Carcharhinus melanopterus ; Capillariidae gen. sp. from Chaetodon lunula, Lutjanus fulvus, and Ellochelon vaigiensis ; Cucullanus bourdin i from Arothron hispidus ; Cucullanus oceaniensis from Abudefduf sordidus ; Pseudascarophis sp. from Chaetodon auriga, Chaetodon lunula, and Mulloidichthys flavolineatus ; Spinitectus ( Paraspinitectus ) palmyraensis sp. nov. from Albula glossodonta ; Philometra pellucida from Arothron hispidus ; and three larval forms, Pulchrascaris sp. from Acanthurus triostegus, Acanthurus xanthopterus, Rhinecanthus aculeatus, Platybelone argalus, Carangoides ferdau, Carangoides orthogrammus, Caranx ignobilis, Caranx melampygus, Caranx papuensis, Chaetodon auriga, Chanos chanos, Amblygobius phalaena, Asterropteryx semipunctata, Valencienea sexguttata, Kyphosus cinerascens, Lutjanus fulvus, Lutjanus monostigma, Ellochelon vaigiensis, Mulloidichthys flavolineatus, Upeneus taeniopterus, Gymnothorax pictus, Abudefduf septemfasciatus, Abudefduf sordidus, and Stegastes nigricans ; Hysterothylacium sp. type MD from Acanthurus triostegus, Carangoides ferdau, Chaetodon lunula, Chanos chanos, Kyphosus cinerascens, Abudefduf sordidus, and Arothron hispidus ; and Cucullanus sp. from Caranx ignobilis . Spinitectus ( Paraspinitectus ) palmyraensis sp. nov. (Cystidicolidae) is described from the intestine of roundjaw bonefish Albula glossodonta . All the nematode species reported in this study represent new geographical records. We discuss how our survey findings compare to other areas of the Indo-Pacific, and the way the relatively numerical dominance of trophically transmitted larval stages likely reflect the intact food web of Palmyra Atoll, which includes a large biomass of large-bodied top predator sharks and ray-finned fishes.

ZooKeys↗

USGS2019

Parasitic copepods (Crustacea, Hexanauplia) on fishes from the lagoon flats of Palmyra Atoll, Central Pacific

We surveyed copepods parasitic on the fishes at Palmyra, a remote atoll in the Central Indo-Pacific faunal region. In total, we collected 849 individual fish, representing 44 species, from the intertidal lagoon flats at Palmyra and recovered 17 parasitic copepod species. The parasitic copepods were: Orbitacolax williamsi on Mulloidichthys flavolineatus ; Anuretes serratus on Acanthurus xanthopterus ; Caligus confusus on Carangoides ferdau , Carangoides orthogrammus , Caranx ignobilis , Caranx melampygus , and Caranx papuensis ; Caligus kapuhili on Chaetodon auriga and Chaetodon lunula ; Caligus laticaudus on Rhinecanthus aculeatus , Pseudobalistes flavimarginatus , M. flavolineatus , Upeneus taeniopterus , Chrysiptera glauca , and Epinephalus merra ; Caligus mutabilis on Lutjanus fulvus and Lutjanus monostigma ; Caligus randalli on C. ignobilis ; Caligus sp. on L. fulvus ; Caritus serratus on Chanos chanos ; Lepeophtheirus lewisi on A. xanthopterus ; Lepeophtheirus uluus on C. ignobilis ; Dissonus similis on Arothron hispidus ; Nemesis sp. on Carcharhinus melanopterus ; Hatschekia longiabdominalis on A. hispidus ; Hatschekia bicaudata on Chaetodon auriga and Chaetodon lunula ; Kroyeria longicauda on C. melanopterus and Lernanthropus sp. on Kyphosus cinerascens . All copepod species reported here have been previously reported from the Indo-Pacific but represent new geographical records for Palmyra, demonstrating large-scale parasite dispersion strategies.

ZooKeys↗

USGS2018

Terrestrial fauna are agents and endpoints in ecosystem restoration following dam removal

Dam removal is an effective and increasingly applied river restoration strategy. This has led to heightened calls for research and monitoring aimed at understanding physical and ecological outcomes following dam removal. While such research programs have increased, roles of terrestrial fauna in the restoration process remain poorly understood, although wildlife and invertebrate fauna are key components of restored ecosystems. Wildlife play reciprocal roles in restoration: they benefit from restored habitats and their activities affect restoration trajectories. Dam removal exposes substrates on former reservoirs and reconnects river corridors, providing new habitat and food resources for terrestrial fauna. Conversely, many wildlife may influence the river restoration process, with both short-term and long-term consequences for community composition, nutrient transfer, and ecosystem function. We assert that considering terrestrial fauna more directly in river restoration research and planning can enhance restoration outcomes. We illustrate these concepts by describing short-term patterns and potential future processes expected from the recent removal of two large dams on the Elwha River in Washington State, the largest dam removal effort ever undertaken. We conclude that an ecosystem-level understanding of restoration following dam removal is critical to fully assessing the impacts and benefits of restoration. This includes measuring the roles and responses of terrestrial fauna to these ecologically and culturally significant restoration projects.

Ecological Restoration↗

USGS2018

Local extinction of the Asian tiger mosquito (Aedes albopictus) following rat eradication on Palmyra Atol

The Asian tiger mosquito, Aedes albopictus, appears to have been extirpated from Palmyra Atoll following rat eradication. Anecdotal biting reports, collection records, and regular captures in black-light traps showed the species was present before rat eradication. Since then, there have been no biting reports and no captures over 2 years of extensive trapping (black-light and scent traps). By contrast, the southern house mosquito, Culex quinquefasciatus, was abundant before and after rat eradication. We hypothesize that mammals were a substantial and preferred blood meal for Aedes , whereas Culex feeds mostly on seabirds. Therefore, after rat eradication, humans and seabirds alone could not support positive population growth or maintenance of Aedes . This seems to be the first documented accidental secondary extinction of a mosquito. Furthermore, it suggests that preferred host abundance can limit mosquito populations, opening new directions for controlling important disease vectors that depend on introduced species like rats.

Biology Letters↗

USGS2013

Parasites affect food web structure primarily through increased diversity and complexity

Comparative research on food web structure has revealed generalities in trophic organization, produced simple models, and allowed assessment of robustness to species loss. These studies have mostly focused on free-living species. Recent research has suggested that inclusion of parasites alters structure. We assess whether such changes in network structure result from unique roles and traits of parasites or from changes to diversity and complexity. We analyzed seven highly resolved food webs that include metazoan parasite data. Our analyses show that adding parasites usually increases link density and connectance (simple measures of complexity), particularly when including concomitant links (links from predators to parasites of their prey). However, we clarify prior claims that parasites ‘‘dominate’’ food web links. Although parasites can be involved in a majority of links, in most cases classic predation links outnumber classic parasitism links. Regarding network structure, observed changes in degree distributions, 14 commonly studied metrics, and link probabilities are consistent with scale-dependent changes in structure associated with changes in diversity and complexity. Parasite and free-living species thus have similar effects on these aspects of structure. However, two changes point to unique roles of parasites. First, adding parasites and concomitant links strongly alters the frequency of most motifs of interactions among three taxa, reflecting parasites’ roles as resources for predators of their hosts, driven by trophic intimacy with their hosts. Second, compared to free-living consumers, many parasites’ feeding niches appear broader and less contiguous, which may reflect complex life cycles and small body sizes. This study provides new insights about generic versus unique impacts of parasites on food web structure, extends the generality of food web theory, gives a more rigorous framework for assessing the impact of any species on trophic organization, identifies limitations of current food web models, and provides direction for future structural and dynamical models.

PLoS Biology↗

USGS2013

Novel foraging in the swash zone on Pacific sand crabs ( Emerita analoga , Hippidae) by mallards

Mallards ( Anas platyrhynchos ) have been observed foraging on intertidal Pacific sand crabs (Hippidae, Emerita analoga ) in the swash zone of sandy beaches around Coal Oil Point Reserve, California, and several other beaches on the west coast since at least November 2010. Unlike foraging shorebirds, Mallards do not avoid incoming swashes. Instead, the incoming swash lifts and deposits them down the beach. Shorebirds and diving ducks commonly feed on sand crabs, but sand crabs appear to be a novel behavior and food source for Mallards. Previous surveys of beaches did not report foraging Mallards on regional beaches, whereas foraging Mallards were common in contemporary (recent) surveys and anecdotal reports. Observations of this potentially new behavior were separated by as much as 1,300 km, indicating that this was not a local phenomenon. Mallards foraged singly, in pairs, and in flocks. An expansion of diet to sand crabs carries risks of exposure to surf, human disturbance, high salt intake, and transmission of acanthocephalan and trematode parasites for Mallards but has the benefit of providing a dependable source of animal protein.

Wilson Journal of Ornithology↗

USGS2008

Parasites in food webs: the ultimate missing links

Parasitism is the most common consumer strategy among organisms, yet only recently has there been a call for the inclusion of infectious disease agents in food webs. The value of this effort hinges on whether parasites affect food-web properties. Increasing evidence suggests that parasites have the potential to uniquely alter food-web topology in terms of chain length, connectance and robustness. In addition, parasites might affect food-web stability, interaction strength and energy flow. Food-web structure also affects infectious disease dynamics because parasites depend on the ecological networks in which they live. Empirically, incorporating parasites into food webs is straightforward. We may start with existing food webs and add parasites as nodes, or we may try to build food webs around systems for which we already have a good understanding of infectious processes. In the future, perhaps researchers will add parasites while they construct food webs. Less clear is how food-web theory can accommodate parasites. This is a deep and central problem in theoretical biology and applied mathematics. For instance, is representing parasites with complex life cycles as a single node equivalent to representing other species with ontogenetic niche shifts as a single node? Can parasitism fit into fundamental frameworks such as the niche model? Can we integrate infectious disease models into the emerging field of dynamic food-web modelling? Future progress will benefit from interdisciplinary collaborations between ecologists and infectious disease biologists.

Ecology Letters↗

USGS2001

Food webs including parasites, biomass, body sizes, and life stages for three California/Baja California estuaries

This data set presents food webs for three North American Pacific coast estuaries and a “Metaweb” composed of the species/stages compiled from all three estuaries. The webs have four noteworthy attributes: (1) parasites (infectious agents), (2) body-size information, (3) biomass information, and (4) ontogenetic stages of many animals with complex life cycles. The estuaries are Carpinteria Salt Marsh, California (CSM); Estero de Punta Banda, Baja California (EPB); and Bahía Falsa in Bahía San Quintín, Baja California (BSQ). Most data on species assemblages and parasitism were gathered via consistent sampling that acquired body size and biomass information for plants and animals larger than ∼1 mm, and for many infectious agents (mostly metazoan parasites, but also some microbes). We augmented this with information from additional published sources and by sampling unrepresented groups (e.g., plankton). We estimated free-living consumer–resource links primarily by extending a previously published version of the CSM web (which the current CSM web supplants) and determined most parasite consumer–resource links from direct observation. We recognize 21 possible link types including four general interactions: predators consuming prey, parasites consuming hosts, predators consuming parasites, and parasites consuming parasites. While generally resolved to the species level, we report stage-specific nodes for many animals with complex life cycles. We include additional biological information for each node, such as taxonomy, lifestyle (free-living, infectious, commensal, mutualist), mobility, and residency. The Metaweb includes 500 nodes, 314 species, and 11 270 links projected to be present given appropriate species' co-occurrences. Of these, 9247 links were present in one or more of the estuarine webs. The remaining 2023 links were not present in the estuaries but are included here because they may occur in other places or times. Initial analyses have examined and are examining the interrelationships among consumer strategy, body size, abundance, biomass, trophic level, life stages, and food-web structure and dynamics. Further use of these data may enable a more general exploration how infectious processes and parasites impact communities and ecosystems. Additionally, we present the data and metadata in a standardized format, attempting to provide a system-neutral template for future food-web assembly and publication.

Ecology↗