Geology topics

Jesse Robert Fischer

Publications and source records attributed to Jesse Robert Fischer.

11 recordsLinked to original sources

USGS2026

Identifying overwintering habitat of silver and bighead carp in the lower Mississippi River: Implications for harvesting and population reduction

A total of 41 sites along a 58 mi reach of the Lower Mississippi River (LMR) were surveyed during winter 2022 for invasive carp aggregation.* Sites consisting of scallops closest to the dike-vegetated bank interface with deeper, slow-moving water and consistent access back to the main channel were preferred. Carp avoided strong currents, and there was no trend in depth selection other than avoiding shallow (less than 20 ft) water. In January 2023, recreation-grade sonar (e.g., side-scan and down-imaging) surveys were conducted in the same reach of the LMR to demonstrate the technology and evaluate carp population size at sites with high abundances based on previous surveys. Fish density was estimated to be 32 fish/10,000 yd 3 (95% confidence interval [CI; 31–34]) using down-imaging software, which is the first estimate of assumed bigheaded carp density in the LMR. Additional fish collections are needed to confirm species composition and size abundance provided by sonar technology. Resurveying sites with high carp abundance over a range of river stages would be necessary to fully characterize habitat conditions, evaluate influence of river stage on occupancy duration, and continue to evaluate species composition and mass removal techniques as a management option in the Lower Mississippi River.

Louisiana, Mississippi↗

USGS2026

Controlling invasive carp ichthyoplankton dispersion using a streamwise-oriented bubble screen: A proof-of-concept validation in a laboratory flume

Recent evidence of invasive grass carp ( Ctenopharyngodon idella ) reproducing in tributaries to the Laurentian Great Lakes has highlighted the need for control efforts targeting multiple life stages. Initial attempts to control dispersal of downstream-drifting invasive carp ichthyoplankton (i.e., eggs and larvae) using an oblique bubble screen (OBS) revealed that nearly neutrally buoyant grass carp eggs and larvae enter helical-like motions driven by the OBS, preventing aggregation within a single capture location. To improve dispersal control methods for such early-life stage carp, we used a laboratory flume to investigate the efficacy of a streamwise-oriented bubble screen to facilitate their near-bank capture. Five early-life stages of grass carp were tested: live water-hardened eggs, pre- and post-gas bladder inflation larvae, dead larvae, and dead eggs (preserved in formalin solution and later rehydrated). A range of mean channel velocities (0.23, 0.45, and 0.75 m/s) was tested for all drifters. Capture percentages increased with increasing airflow. Preserved eggs, for instance, showed capture percentages up to 95 %, 87 %, and 69 % at low, medium, and high water velocities for the highest airflow rate, respectively, in contrast with the lower than 5 % capture measured for zero airflow cases. Symmetric secondary flow structures on either side of the bubble screen induced helical trajectories of drifters and facilitated their capture in net-arrays along each wall. Velocity data were used to estimate helical recirculation timescales, enabling calculation of optimal bubble diffuser and net-array lengths for desired capture rates. This study provides useful guidance for the design of effective systems to control dispersal of downstream-drifting ichthyoplankton of invasive carp in streams.

Journal of Great Lakes Research↗

USGS2026

Development and assessment of fluorescent-dyed, preserved invasive grass carp (Ctenopharyngodon idella) eggs as surrogates for live eggs in transport and dispersal control experiments

Invasive species such as grass carp ( Ctenopharyngodon idella ) pose substantial ecological threats to North American freshwater ecosystems. Understanding their early life stage behavior is critical for management efforts. From spawning to hatching, invasive carp eggs must remain suspended in the water column while drifting downstream for the best chance of survival. This highly vulnerable life stage is a potential target for population control to reduce recruitment. However, studying egg transport and potential dispersal control techniques is challenging, because the availability of live eggs and time period for experimentation are extremely limited. Additionally, accurately replicating the physical characteristics and transport mechanisms of fish eggs using surrogates in laboratory and field studies is not trivial. This study presents a novel method to create fluorescein-dyed, preserved grass carp eggs as surrogates for live eggs in transport and dispersal control experiments. This technique enables year-round studies of grass carp egg transport, offering managers a reliable tool for developing and testing dispersal control and passive sampling methods for invasive carp eggs. In this study, we rehydrate and dye preserved grass carp eggs in varying concentrations of aqueous fluorescein for a range of rehydration times, evaluate dye retention and egg visibility under ultraviolet light (UV-A), and measure diameters and settling velocities for comparison with live eggs. Eggs rehydrated in 0.100 g per liter fluorescein for 30 min maintain adequate brightness for up to 40 min in mixed conditions and exhibit mean settling velocities and densities similar to live eggs, making them ideal for laboratory experiments using quantitative imaging techniques.

River Research and Applications↗

USGS2025

Efficacy of oblique bubble screen deterrents on redirecting live eggs and larvae of grass carp (Ctenopharyngodon idella) at different developmental stages

Invasive carp have severely damaged aquatic ecosystems in the USA, particularly in the Mississippi River Basin. Behavioral deterrents have been developed in the last few decades to control population expansion into new ecosystems. However, none of these deterrents are capable of controlling early-life stage carp, which have limited or no mobility during their drifting stage in rivers. Capturing eggs and larvae in large numbers warrants new methods due to their distinct physical and biological properties as well as their lack of behavioral response. We tested a novel method to redirect downstream drifting eggs and larvae for their efficient removal in streams using an oblique bubble screen (OBS) deterrent. We investigated the effects of mean water velocity and airflow rate on redirection of eggs, pre-gas bladder inflation (GBI) larvae, near-GBI larvae, and dead larvae. Although similar OBS configurations had shown high efficacy redirecting plastic spheres (egg surrogates) in previous studies, they underperform redirecting live eggs and larvae. However, distinct patterns were identified for eggs, pre-GBI, near-GBI, and dead larvae. A detailed hydrodynamic analysis showed that eggs closely follow the larger scales of motions created by the OBS, and that larvae can actively respond to turbulence cues. This study yielded new insights into the movement of early-life stage grass carp in a turbulent flow with strong recirculation, and provided important data to improve the design of bubble screen dispersal barriers for invasive carp management and population control.

Water Resources Research↗

USGS2024

Side-scan sonar as a tool for measuring fish populations: Current state of the science and future directions

Side-scan sonar (SSS) is a powerful tool that can be used to address many key questions in fisheries science. In principle, SSS uses dual transducers to transmit a narrow-beam, wide-angle acoustic signal as the survey vessel transits an area. The intensity of reflected sound is recorded to generate an image mosaic comprised of benthic substrates and targets in the water column, including organisms such as fish. Although SSS has been around for decades, recent advancements have opened new opportunities to leverage this technology to directly measure fish populations. In this paper, we review the current state of the science and identify opportunities to further refine SSS for fisheries applications.

Fisheries↗

USGS2024

Limiting downstream dispersal of invasive carp egg surrogates using a laboratory-scale oblique bubble screen

We conceptualize and test a non-intrusive barrier, comprised of an oblique bubble screen (OBS) oriented at an angle to the mean flow, to prevent the downstream dispersal of invasive carp egg surrogates. Three surrogates of different densities and diameters were tested. Secondary flows created by the OBS were tuned to redirect surrogate eggs to facilitate their capture. Surface particle image velocimetry and acoustic Doppler velocimetry were used to characterize secondary flows. We assessed the influence of airflow rate, OBS angle, mean flow velocity, and surrogate density on particle redirection. In general, redirection efficiency improves by increasing the OBS angle with respect to the cross-section. At a mean flow velocity of 0.75 metres per second (m/s), the OBS system redirected up to 60% (%) of positively buoyant particles (specific gravity SG = 0.9, and diameter d = 7.09 millimetres [mm]) and 40% of semi-buoyant particles (SG = 1.001, d = 3.1 mm). Negatively buoyant particles (SG = 1.04, and d = 5.90 mm) were redirected by the physical structure of the diffuser rather than by OBS-induced flow. The study shows that an OBS system can be used to effectively redirect carp-egg surrogates over a wide range of particle sizes and densities, allowing for selective targeting of undesired particles in streams.

Journal of Ecohydraulics↗

USGS2024

Precision of four calcified structures for age estimation of Black Carp

Objective Black Carp Mylopharyngodon piceus is an emerging invasive species in North America with an expanding population in the Mississippi River basin. Current aging methods use a suite of structures for age estimation, and a single structure is needed to minimize processing time, to maximize consistency of age and growth measurements, and to allow for back-calculation of individual fish length at age. Methods In total, 236 Black Carp were collected throughout the year from 2017 to 2019 through incidental captures by commercial fishers and biologists. In a subsample, 119 Black Carp from 429 to 1268 mm total length were compared for the precision of annuli counts by two experienced readers for the two anterior pectoral fin rays, the anterior dorsal fin ray, sectioned vertebrae, and lapilli otoliths based on percent exact agreement (PA), percent agreement within 1 year (PA ± 1), coefficient of variation (CV), and bubble plots. Consensus annuli counts were compared by PA and CV between structures. We applied annuli counts, as opposed to age, as fish were collected during all seasons and structures were examined independently by readers without knowledge of capture date. Result Vertebrae and dorsal rays had the highest PA between readers. Dorsal ray had the lowest CV and higher PA ± 1. Pectoral rays and lapilli otoliths had the lowest PA. Between-structure consensus annuli counts indicated that pectoral rays and the dorsal ray annuli counts were the most similar (PA >70% and CV <12) and lapilli otoliths were the most dissimilar (PA >35% and CV >24). Reader-reported confidence was highest for vertebrae, then in decreasing order, dorsal ray, pectoral rays, and lapilli otoliths. Lumens were present in all fin rays with only minor effects observed on annuli counts, aside from the anterior-most pectoral fin ray, in which lumens obscured the presence of one or more potential annuli in 61% of structures. Conclusion The dorsal ray had the highest agreement between readers, with agreement with ±1 year at 98%; the structure can be efficiently extracted and processed, and the structure's morphology and growth pattern are conducive to aging older fish. Vertebrae had high agreement between readers, but a systematic pattern of double bands in vertebrae increased the between-reader variation in older fish as the interannual growth pattern compressed the viewable area; this was identified by readers based on aging criteria and highlights the need for training novice readers. Validation of annual growth in the tested suite of structures is still needed.

Mississippi River↗

USGS2023

Application of electricity and underwater acoustics to clear fish from a navigation lock during maintenance

The presence of fish within navigation locks can introduce an environmental challenge for construction crews when maintenance is required. This study examined the effectiveness of a dual-deterrent fish herding technique using electricity and acoustic stimuli to reduce the abundance of fish within a navigation lock before a scheduled dewatering for maintenance. Fixed-location multi-beam imaging sonar was used to evaluate fish per minute (FPM) detections near the lock entrance before, during, and after the herding effort. Standardized mobile side-scan sonar surveys were also conducted before and after the herding to examine fish presence throughout the entire lock. Collectively, a 73% reduction in fish targets detected by side-scan sonar and a 43% reduction in FPM detected by imaging sonar were observed following the herding technique. Post-fish herding, 88% reduction in FPM >400mm and a 35% reduction in FPM <400mm were observed. Fish abundance within the lock chamber was reduced and did not result in construction delays, which was problematic and costly during previous dewatering events. Since data from this study are limited to a single lock dewatering and fish clearing event, caution should be taken with the extrapolation of these results. However, the applied methods show promise and may inform future fish clearing efforts to aid lock maintenance.

Illinois↗

USGS2022

Assessing the efficacy of oblique bubble screens for control of aquatic invasive species

Non-physical barriers, such as bubble screens (or curtains), are promising low-impact strategies to deter the spread of Aquatic Invasive Species (AIS) in streams. Bubble screens have been successfully implemented to redirect and/or deter adult fish and to capture plastics in some rivers, but their efficacy on invasive fish at multiple life stages (eggs, larvae, and adult fish) is not yet known. Air bubbles rising from a diffuser placed at the bottom of a stream generate counterrotating eddies that interact with the mean flow. Understanding such interactions allows us to design an Oblique Bubble Screen (OBS), a system able to direct drifting particles (i.e., eggs and larvae) towards the banks of a stream for potential capture, based on the water velocity, river morphology, orientation of the OBS, diffuser material, and air flow rate. We present the results from a series of laboratory experiments at the Ecohydraulics and Ecomorphodynamics Laboratory at the University of Illinois at Urbana-Champaign, using positively buoyant (specific gravity SG=0.9, and diameter d=7.09mm) and negatively buoyant (SG=1.04, d=5.9mm) spherical particles to represent the range of size and density of developing Grass carp eggs, an invasive species in North America (Ctenopharyngodon idella). An air compressor was connected to a porous tube laid at the bottom of a recirculating flume, with a regulator and a flow meter to control air pressure and air flow rate. Acoustic Doppler Velocimeters (ADV) and Surface Particle Image Velocimetry (PIV) were used to measure the effect of the OBS on the velocity field. Our collected data showed that: (1) a single OBS is able to direct drifting particles towards the bank at the downstream end of the OBS, (2) adjusting orientation angle and air flow rate of the diffuser can increase capture efficacy under different flow conditions, reaching up to a 100% of capture for buoyant particles, and (3) the ratio between lateral velocity generated by the OBS (as a function of air flow rate) and the mean longitudinal flow velocities, can be used as an indicator to predict whether the OBS will be able to carry the particles all along the length of the diffuser in wider and deeper streams. The optimal configurations from our study will be tested with live Grass carp eggs and larvae, as well as with upstream-swimming adult carp to assess its potential as a two-way barrier, and to provide design parameters to set the air-flow rate and diffuser type needed for field deployments, according to width-to-depth ratios and stream morphology.

Conference Paper↗

USGS2021

Emerging control strategies for integrated pest management of invasive carps

Invasive carps are ecologically and economically problematic fish species in many large river basins in the United States and pose a threat to aquatic ecosystems throughout much of North America. Four species of invasive carps: black carp ( Mylopharyngodon piceus ), grass carp ( Ctenopharyngodon idella ), silver carp ( Hypophthalmichthys molitrix ) and bighead carp ( Hypophthalmichthys nobilis ), are particularly concerning for native ecosystems because they occupy and disrupt a variety of food and habitat niches. In response, natural resource agencies are developing integrated pest management (IPM) plans to mitigate invasive carps. Control tools are one key component within a successful IPM program and have been a focal point for development by governmental agencies and academic researchers. For example, behavioural deterrents and barriers that block migratory pathways could limit carps range expansion into new areas, while efficient removal methods could suppress established carp populations. However, control tools are sometimes limited in practice due to uncertainty with deployment, efficacy and availability. This review provides an overview of several emerging modelling approaches and control technologies that could inform and support future invasive carp IPM programs.

Journal of Vertebrate Biology↗

USGS2019

Understanding fish assemblage structure in lentic ecosystems: Relative effects of abiotic factors and management legacies

We investigated associations of fish assemblages and habitat characteristics (e.g., morphology and water chemistry) from 45 natural lakes and reservoirs in Iowa to determine whether species or trophic guild composition and environmental correlations were concordant between waterbodies of different origins. Overall, fish assemblage composition between natural lakes and reservoirs was consistently dissimilar based on a permutational multivariate ANOVA. Species composition from nonmetric multidimensional scaling ordinations for reservoirs was correlated with a variety of limnological and physical characteristics, whereas species composition and trophic composition of natural lakes were weakly associated with habitat characteristics. Species richness was positively related to waterbody and watershed size for reservoirs but not for natural lakes. Conversely, species richness was negatively correlated with increasing eutrophic conditions in natural lakes but not in reservoirs. Overall, distinct differences in assemblage composition were observed between natural and artificial lentic ecosystems and may have resulted from underlying differences in limnological, physical, and anthropogenic influences between systems. Dissimilar management legacies between waterbody types, such as limited or no stocking of nonrecreationally important species and the use of piscicides, may have additionally had overriding effects on the observed assemblage–environmental relationships. For instance, lower trophic richness and species richness in reservoirs appeared to have resulted from replacement of a diversity of small-bodied native species by relatively few commonly stocked sport fishes. Our results emphasize the need to consider waterbody origin and the potential influence of historical or current management strategies on fish assemblage characterization and subsequent inferences made from environmental correlations.

Iowa↗