Geology topics

Jason S. Alexander

Publications and source records attributed to Jason S. Alexander.

At least 19 recordsLinked to original sources

USGS2026

The influence of riparian zone grazing on channel stability in an arroyo

The introduction of large herds of domesticated grazing animals by European immigrants in the late 19th century is one primary hypothesis used to explain the initiation of arroyo cutting in the American West. But studies designed to quantify the effects of grazing on watershed hydrology and sedimentation have had conflicting results that are often scale dependent. We used a before-and-after study design to examine effects of changes in cattle grazing practices on channel stability in Muddy Creek, an arroyo in the Colorado River headwaters. We digitized 620 meander loop cutoff geometries in the alluvial bottom of Muddy Creek and used meander loop cutoff rate as a broad measure of channel stability. Poisson regression modeling indicated that the change in grazing practices caused an order-of-magnitude decrease in meander loop cutoff rate that was independent of other forcings. Repeat measurements of channel geometry showed a decline in bankfull channel width of about 40% after the changes were implemented. Increases in riparian vegetation density are deduced to be the primary mechanism for the increase in channel stability. Prior to the changes in grazing practices, at least one meander loop cutoff occurred each year, some of which were large enough to create headcuts that scale with the depth of downcutting in this arroyo system. Our analysis demonstrates the profound effects that different grazing practices have on channel stability in headwater arroyo systems, and the potential for grazing animals to initiate a cascade of sediment yields to receiving stream networks.

Colorado, Utah, Wyoming↗

USGS2025

Fluvial sediment dynamics in the Shoshone River and tributaries around Willwood Dam, Park County, Wyoming

Sedimentation affects many of the aging reservoirs in the United States. Dams and water diversions from rivers have been central elements of infrastructure supporting agricultural irrigation in the arid and semiarid regions of the Western United States for more than a century. The Willwood Irrigation District diversion dam (hereafter referred to as “Willwood Dam”) in Park County, Wyoming, is approximately 12 miles northeast of Cody, Wyo.; has a structural height of 70 feet; and impounds the Shoshone River for diversion into the Willwood Canal. Willwood Dam is part of a larger irrigation scheme supported by water storage in the much larger Buffalo Bill Dam, which is approximately 20 miles upstream. In October 2016, renovation construction activities at Willwood Dam and the Willwood Canal caused an unplanned evacuation of nearly 96,000 cubic yards of fine sediment. The fine sediment release in 2016 raised concerns that ongoing sediment management at Willwood Dam could impose limits on the long-term health of the aquatic ecosystem and fish populations. The U.S. Geological Survey, in cooperation with Wyoming Department of Environmental Quality and Willwood Work Groups 2 and 3, initiated an investigation of the dynamics of sediment transport in the Shoshone River and selected tributaries between Buffalo Bill Dam and Willwood Dam. The goal of the study was to quantify sediment transport into and out of Willwood Dam on an annual, seasonal, and event basis to better understand the relative quantities of sediment coming from natural sources and human activities on the landscape. The study ran from March 2019 through October 2021 and used observations of streamflow, turbidity, and acoustic backscatter collected at streamgages upstream and downstream from Willwood Dam to quantify suspended-sediment loads into and out of the dam during irrigation and fallow seasons, precipitation-runoff events, and deliberate sediment releases. Each tributary’s relative contribution to the sediment load upstream from Willwood Dam was examined using discrete measurements of suspended-sediment concentration and bedload during irrigation and fallow seasons, precipitation events, and stable conditions. Analysis of daily precipitation and temperature data indicated that conditions in the study area during the 2019 agricultural year were wetter and colder than period of record normal, and drier and near normal temperatures for the 2020 and 2021 agricultural years. Not all sediment load records between 2019 and 2021 are complete because of rejected observations (outliers), instrument failures or fouling, and instrument removal for calibrations. Statistical modeling of suspended-sediment concentration using paired values of turbidity and acoustic backscatter produced four models that, after refinement, had coefficients of determination indicating that more than 84 percent of the variance was explained by either turbidity or acoustic backscatter. A system of rules was developed to select the model predictions based on the seasonal operations of Willwood Dam, assumptions about the grain sizes mobilized during these operations, and assumed accuracy of the models at the downstream streamgage (Shoshone River below Willwood Dam, near Ralston, Wyo. [streamgage 06284010]) under different operational conditions. The sediment budget between upstream and downstream estimates of loads was interpreted using the mean predicted values bound by their respective model prediction intervals. When mean predicted loads of one streamgage were contained in the prediction intervals of the other streamgage, and vice-versa, difference in the sediment budget were interpreted as “indeterminate.” Modeled sediment load balances demonstrated the depositional and erosional behaviors expected from the conceptual model of dam operations whereby sediment tends to accumulate during irrigation seasons when the dam is spilling over the top, and sediment tends to evacuate during the fallow seasons when it is flowing through the sluice gates at the base of the dam. The sediment load calculations using the rules-based model criteria indicated that between 14,200 and 380,000 tons of suspended sediment moved through the Shoshone River around Willwood Dam during the irrigation seasons of 2019, 2020, and 2021; 380,000 tons of suspended sediment were transported during the cool, wet year of 2019, and 14,200 tons of suspended sediment were transported in 2020, which was relatively dry. During fallow seasons 2019, 2020, and 2021, which had fewer complete records, between 1,140 and 106,000 tons of suspended sediment was estimated to have moved through the river. For all seasons except fallow season 2022, the models estimated that more sediment was released from the dam than entered the dam, but the modeled mean loads at each streamgage were nearly always within the prediction intervals of each other, making the sediment balance indeterminant. Examination of suspended-sediment loads during irrigation seasons indicated that between 65 and 85 percent of fine sediment was transported during annual high flows and storm events, with the remainder transported during steady, lower streamflows. Examination of suspended loads during fallow seasons indicated that deliberate sediment releases through Willwood Dam accounted for between 39 and 67 percent of the total sediment moved during the fallow seasons. Deliberate sediment releases from Willwood Dam had estimated net exports of between 1,360 and 22,400 tons. Between August 2017 and July 2023, suspended-sediment concentration and bedload sediment samples were collected from 9 tributaries to the Shoshone River during 137 sampling events, including stable and precipitation-runoff conditions. During irrigation season precipitation events, the mean total sediment yields ranged from 0.33 to 9.51 tons per day per square mile; during fallow season precipitation events, the mean total yields ranged from 0.04 to 0.95 ton per day per square mile. The mean total sediment yield per unit area across all samples at each tributary site ranged from 0.26 to 3.08 tons per day per square mile. Bedload was a minor fraction of the total load, constituting a mean of 4 percent across all samples; 3 and 6 percent for events and nonevents, respectively, during irrigation season; and 3 and 1 percent for events and nonevents, respectively, during the fallow season. With the exception of one tributary, Dry Creek, these mean yield values were within the range of watershed-scale background sediment yield values estimated from reservoir surveys and previous suspended-sediment studies. Imagery from irrigation seasons 2012, 2015, 2017, 2019, and 2022 was used to determine the planimetric backwater extent of the pool area in the Shoshone River behind Willwood Dam to identify any changes in sediment storage. Active river channel widths in the Shoshone River upstream from Willwood Dam were all similar between years except 2015, which was determined to be statistically different from all other years. Bathymetric data taken in the pool behind Willwood Dam during three different surveys between November 2017 and April 2022 indicated no statistically significant differences in bed elevations between the years. Results from the planimetric and bathymetric survey data provide multiple lines of evidence indicating that sediment did not accumulate behind the dam within the error of the methods used. Examination of how precipitation affects sediment transport in the Shoshone River upstream from Willwood Dam indicated that accumulated rainfall from the natural runoff events captured during the study period varied from a trace to as much as 4.26 inches, with associated predicted suspended-sediment loads varying from 112 to 232,000 tons of suspended sediment. The behavior of the sediment loads relative to accumulated precipitation did not appear to change depending on irrigation or fallow season. A model of suspended-sediment concentrations relative to the 2-day accumulated precipitation indicated that suspended-sediment concentrations in the Shoshone River upstream from Willwood Dam increased exponentially for accumulations of 0.3 inch or more; such storms accounted for 10 percent or less of precipitation events observed during the 1981 to 2018 period of record. The gaps in records, precision of the instrumentation, and large variation in grain sizes in suspended-sediment mixtures downstream from the dam made closing the sediment budgets for most seasons unattainable. The biggest recent change in sediment storage measured using the planimetric area of deposits behind Willwood Dam took place between 2015 and 2017. The main event between these two measurements was the installation of new Willwood Canal gates in October 2016, which resulted in the large unplanned sediment release. Because the sediment budgets were nearly always indeterminate and the planimetric and bathymetric data indicated little change in the bed and bank material, it is likely that the change in sediment storage behind the dam during the study period was small relative to the precision of the statistical models and other uncertainties. This body of evidence suggests that, averaged during the 3-year study period, no major changes in storage took place, and that the current operations may be keeping storage at near-equilibrium. This condition could have been initiated because the middle sluice gate has now been operational since 2014, and the sediment release in October 2016 evacuated a large amount of legacy sediment from storage. Although the uncertainties are large, sluicing events allow for controlled releases of sediment that contributed to the near equilibrium conditions observed over an annual basis during this study.

Wyoming↗

USGS2025

U.S. Geological Survey Colorado River Basin science and technology collaboration meetings on drought (2021)—Synthesis of findings

Ongoing, prolonged, and severe drought and water overuse during the first two decades of the 21st century have reduced water supplies of the Colorado River Basin, with effects cascading to ecosystems and human communities throughout the basin. In June and July 2021, the U.S. Geological Survey (USGS) Colorado River Basin Actionable and Strategic Integrated Science and Technology initiative team held a series of 12 collaboration meetings with USGS scientists and managers to discuss complicated, integrated science challenges and solutions related to drought in the Colorado River Basin. These Science and Technology collaboration meetings were structured to identify challenges experienced by meeting participants when working on complex problems, explore opportunities for coproducing scientific information, and envision future collaborative programs that leverage new technology. The 12 meetings were attended by 79 USGS staff representing 43 unique affiliations (for example, USGS science centers, mission areas, and regional offices). Meeting participants submitted 865 individual responses to six general discussion prompt topics (“Challenges,” “Knowledge Gaps,” “Existing Capabilities,” “Strategies and Actions,” “Example Applications,” and “Next Steps”) using a structured online collaboration tool. However, specific questions or tasks from each general discussion prompt varied by meeting topic. Terms from the USGS Thesaurus ( https://apps.usgs.gov/thesaurus/ ) and USGS Data Lifecycle Model ( https://www.usgs.gov/data-management/data-lifecycle ) were used to identify and summarize participant responses relevant to science integration, stakeholder engagement, and information management technology. From these responses, opportunities for the Colorado River Basin Actionable and Strategic Integrated Science and Technology initiative to facilitate science integration in the Colorado River Basin are highlighted in this report, including (a) pursuing specific interdisciplinary research topics that require integrating knowledge across spatial and temporal scales, (b) connecting scientists across disciplines, (c) reducing barriers to stakeholder engagement, (d) identifying new technologies, and (e) facilitating data access. Multiple strategies for designing future Science and Technology collaboration meetings are also outlined in this circular to better collect and analyze participant responses.

Arizona, California, Colorado, Nevada, New Mexico,↗

USGS2025

Linking suspended sediment conditions to hyporheic dissolved oxygen and fine sediment deposition in salmonid spawning habitat below an irrigation dam, Park County, Wyoming

Dams are essential for water resources management but impose notable effects on fluvial sediment transport and downstream river morphology by reducing or altering the timing of sediment loads. We explored the relationship between dam sediment management and downstream sediment dynamics in the context of riverine fisheries management. We quantified the effects of dam sediment management operations on downstream salmonid spawning habitat during two fall water-level drawdown periods: an experimental drawdown leading to sediment release or a typical slower drawdown intended to minimize release of sediment. The experimental drawdown increased deposited fine sediment and decreased hyporheic dissolved oxygen levels. However, the typical drawdown did not increase fine sediment deposition or decrease hyporheic dissolved oxygen. We quantify the immediate impacts of dam operations using a number of water column and substrate metrics, and demonstrate the potential for sediment flushing operations to have short-term seasonally persistent effects on salmonid spawning habitat. Common surrogates of suspended sediment concentration (i.e. turbidity) were poor indicators of salmonid spawning habitat, especially when sand was the dominant grain size. Instead, measures of suspended sediment concentration such as acoustic backscatter sensors and depth-integrated samples, combined with discharge, appear to be better suited for monitoring and inferring the impacts of dam operations involving sediment releases on salmonid spawning habitat. We demonstrate the importance of understanding sediment particle sizes, monitoring relevant water column conditions in real-time, and provide options for effectively monitoring the downstream impact of dam operations. This work can help managers balance dam sediment management operations with ecological priorities.

Wyoming↗

USGS2024

Yellowstone River fish bypass channel physical and hydraulic monitoring, Montana

The U.S. Geological Survey, in cooperation with the Bureau of Reclamation, began monitoring the Yellowstone River fish bypass channel according to the specifications of the Lower Yellowstone Adaptive Management and Monitoring Plan. The fish bypass channel was constructed to provide upstream migrating fish with a route around a diversion dam. The objective of this study is to monitor the physical and hydraulic characteristics of the bypass channel, including flow split, minimum depth for the deepest continuous 30 cross sectional feet, and mean channel velocity. Data are collected through several sets of measurements within the bypass channel at varying times during the field season. Physical and hydraulic data collected during this study can be used to ensure the hydraulic design criteria of the bypass channel are being met. This report presents the methods used to monitor the physical and hydraulic characteristics of the bypass channel. Examples of the types of data collected and summarized as part of this study are provided using three figures and one table. Data collected for this study are summarized and published in an accompanying U.S. Geological Survey data release. The monitoring data can be used by the cooperating agencies to help describe the preferred hydraulic conditions for Scaphirhynchus albus (Forbes and Richardson, 1905; pallid sturgeon) passage.

Montana↗

USGS2023

Interim guidance for calibration checks on a submersible acoustic backscatter sediment sensor

Over the past two decades, the U.S. Geological Survey (USGS) and other agencies have pioneered the use of active acoustic sensors to monitor suspended-sediment concentrations and particle sizes in rivers and streams at the subdaily time scale. The LISST-ABS submersible acoustic backscatter sediment sensor (or “ABS sensor”) was developed by Sequoia Scientific, Inc., as an alternative to turbidity sensors for monitoring suspended-sediment concentrations in surface waters. The ABS sensor is different than traditional active acoustic instruments because it is small, lower in cost, lightweight, and requires less power; and the sampling volume is within the first 15 centimeters of the transducer face. Initial testing by the USGS indicated the ABS sensor had utility as a novel, cost-effective, off-the-shelf tool for monitoring suspended-sediment concentration in surface waters, and its use within the agency has increased in since its introduction around 2016. However, initial testing did not account for the potential of transducer calibration drift over longer deployments. As part of its mission to unify and standardize research and development activities of Federal agencies involved in fluvial sediment studies, the Federal Interagency Sedimentation Project partnered with the USGS Wyoming-Montana and New Mexico Water Science Centers to examine the potential for use of standard, low-tech laboratory equipment to perform calibration checks on ABS sensors on long-term deployments. The experiments were intended to provide USGS scientists and the public with interim guidance to assist in operating and maintaining the ABS sensor.

Open-File Report↗

USGS2022

Using continuous measurements of turbidity to predict suspended-sediment concentrations, loads, and sources in Flat Creek through the town of Jackson, Wyoming, 2019−20 — A pilot study

Flat Creek, a tributary to the Snake River in northwestern Wyoming, is an important source of irrigation water, fish and wildlife habitat, and local recreation. Since 1996, a section of Flat Creek within the town of Jackson has failed to meet Wyoming Department of Environmental Quality’s surface-water-quality standards for total suspended solids and turbidity required by its State water-use classification. Wyoming Department of Environmental Quality water-quality standards prohibit increases of greater than 10 nephelometric turbidity units (NTU) because of human activities in streambodies of Wyoming. Sediment loading from urban stormwater runoff is hypothesized in previous publications to be the primary cause of impairment, but the relative fine sediment contributions from various sources have not been quantified. In cooperation with the Teton Conservation District, the U.S. Geological Survey began a pilot study in the Flat Creek drainage basin to investigate the use of continuous turbidity measurements to predict suspended-sediment concentrations, loads, and sources through the town of Jackson, Wyoming. The predictions were based on turbidity measurements collected every 15 minutes during parts of water years 2019 and 2020. Analysis of differences in the more than 15,000 turbidity measurements coincident between upstream and downstream streamgages indicated that differences of 10 formazin nephelometric units (FNU) or greater composed about 1 percent of the total accepted measurements during the 2019 and 2020 measurement periods. The median difference in measured turbidity between coincident records at the upstream and downstream streamgages in 2019 was 0.20 FNU and the median difference in 2020 was 0.0 FNU. Calculations of mean total sediment loads in Flat Creek during 2019 and 2020 indicate substantially more suspended-sediment was in Flat Creek below the town of Jackson than above town. Mean total calculated suspended-sediment loads at the upstream streamgage were 26 percent in 2019 and 21 percent in 2020 of the mean total suspended-sediment loads at the downstream streamgage. For measurements occurring at the same time (coincident), mean calculated suspended-sediment loads entering the town of Jackson from Flat Creek were 39 percent in 2019 and 35 percent in 2020 of those loads exiting town in Flat Creek. Incorporating statistical model uncertainty, mean differences between predicted suspended-sediment loads could potentially be zero. The annual period of operations of the South Park Supply Ditch, which diverts water into Flat Creek from the Gros Ventre River, constituted between 91 and 90 percent of the total calculated suspended-sediment load at the upstream streamgage, and between 88 and 87 percent of the loads at the downstream streamgage for coincident periods of record in 2019 and 2020, respectively. However, in the absence of simultaneous continuous monitoring and resulting measurements at the outlet of the South Park Supply Ditch, no robust method was available to quantify suspended-sediment loads from the ditch. A moving average filter was used to identify and isolate short-duration (minutes to hours) spikes in turbidity at the downstream streamgage that were likely caused by overland flow and urban runoff. Suspended-sediment loads during urban runoff constituted about 8 and 10 percent of the total calculated suspended-sediment loads at the downstream streamgage (Flat Creek below Cache Creek, near Jackson, Wyoming; U.S. Geological Survey streamgage 13018350), and 6 and 4 percent of the loads calculated for the record coincident with the upstream streamgage in 2019 and 2020, respectively. Estimated suspended-sediment loads at the upstream streamgage during urban runoff events for the coincident period of record constitute 32 and 40 percent of the total estimated suspended-sediment loads at the downstream streamgage in 2019 and 2020, respectively, indicating sediment loads from urban runoff may contribute less than 10 percent, even as little as 5 percent, of the total sediment load exiting the town of Jackson on Flat Creek. Estimation of the proportion of suspended-sediment loads at the upstream site that originate from the South Park Supply Ditch or Cache Creek can only be done with assumptions but have the potential to be equivalent to or greater than calculated suspended-sediment loads associated with urban runoff.

Wyoming↗

USGS2022

Testing the potential of streamflow data to predict spring migration of an ungulate herds

In mountainous and high latitude regions, migratory animals exploit green waves of emerging vegetation coinciding with rising daily mean temperatures initiating snowmelt across the landscape. Snowmelt also causes rivers and streams draining these regions to swell, a process referred to as to as the ‘spring pulse.’ Networks of streamgages measuring streamflow in these regions often have long-term and continuous periods of record available in real-time and at the daily time step, and thus produce data with potential to predict temporal migration patterns for species exploiting green waves. We tested the potential of models informed by streamflow data to predict timing of spring migration of mule deer ( Odocoileus hemionus ) herds in a headwater basin of the Colorado River. Models using streamflow data were compared with those informed by traditional temperature-derived measures of the onset of spring. Non-parametric linear-regression techniques were used to test for temporal stationarity in each variable, and logistic-regression models were used to produce probabilities of migration initiation. Our analysis indicates that models using daily streamflow data can perform as well as those using temperature-derived data to predict past-migration patterns, and nearly as well in potential to forecast future migrations. The best performing model was used to generate probabilities of onset of migration for mule deer herds over the 69-year period-of-record from a streamgage. That model indicated spring migration has been trending toward earlier initiations, with modeled median initiations shifting from a Julian day of 123 in the mid 20 th century to Julian day 115 over the most recent two decades. The period of 1960 to 1979 had the latest modeled median initiations with Julian day of 128. The analyses demonstrate promise for merging existing hydrologic and biological data collection platforms in these regions to explore timing of past migration patterns and predict migration onsets in real-time.

Colorado, Wyoming↗

USGS2021

U.S. Geological Survey science for the Wyoming Landscape Conservation Initiative—2018 annual report

The Wyoming Landscape Conservation Initiative (WLCI) was established in 2007 as a collaborative interagency partnership to develop and implement science-based conservation actions. During the past 11 years, partners from U.S. Geological Survey (USGS), State and Federal land management agencies, universities, and the public have collaborated to implement a long-term (more than 10 years) science-based program that assesses and enhances the quality and quantity of wildlife habitats in the southwest Wyoming region while facilitating responsible development. The USGS WLCI Science Team completes scientific research and develops tools that inform and support WLCI partner planning, decision making, and on-the-ground management actions. In fiscal year 2018, the USGS initiated 3 new projects and continued efforts on 21 ongoing science and web-development projects. The first new project was initiated to support Secretarial Order 3362 which calls on the USGS to assist Western States in mapping big-game migration corridors and developing new mapping tools. During 2018, the USGS hosted a workshop in Laramie, Wyoming, which included more than 70 State and Federal wildlife experts from Colorado, New Mexico, Texas, and Wyoming. Most of the mapping and migration tool curricula used in the workshop were derived from prior WLCI studies and mapping efforts of big-game migration movement in habitats undergoing large-scale energy development. The second new project was in response for WLCI partners to better understand sedimentation and hydrogeomorphic processes in a cold-desert headwater and the third new project was designed to improve our approach for people to access, manage, and analyze WLCI data and WLCI resource information. The USGS published 18 products (including peer-reviewed journal articles, USGS series publications, and data releases) and provided more than a dozen professional oral and poster presentations at scientific meetings and numerous informal presentations to WLCI partners at meetings and workshops. This report summarizes the objectives and status of each project and highlights the USGS 2018 accomplishments and products.

Wyoming↗

USGS2020

Deposition potential and flow-response dynamics of emergent sandbars in a braided river

Sandbars are ubiquitous in sandy‐braided rivers throughout the world. In the Great Plains of the United States, recovery and expansion of emergent sandbar habitat (ESH) has been a priority in lowland rivers where the natural extent of sandbars has been degraded. Recovery efforts are aimed at protection of populations of the interior least tern ( Sterna antillarum ) and piping plover ( Charadrius melodus ). But quantitative observations of deposition and erosion dynamics of populations of sandbars across long segments of rivers are rare. We present a three‐part case study which used Bayesian regression models to examine relations between hydrology, channel morphology, and ESH responses in the Platte River, eastern Nebraska. Logistic regression indicates presence of ESH is positively related to the Parker, (1976) stability criterion and a gradient in sediment transport mode, and negatively related to presence of vegetation. Hierarchical linear regression modeling shows direct coupling between sandbar top‐surface height and formative flood magnitude, but the gap between formative flood stage and sandbar top‐surface increases with increasing discharge. Finally, linear regression modeling of sandbar erosion demonstrates rates of ESH erosion are on the order of 10 −1 ha/day during high‐flow periods and 10 −2 during low‐flow periods, but sandbar persistence is largely a function of sandbar starting size. The collective observations highlight the importance of large floods (>3‐year recurrence) in creating very large sandbars that persist as high‐quality ESH over periods of years whereas lower‐magnitude, more‐frequent flood events create lower‐quality ESH that typically does not persist into the following nesting season.

Nebraska↗

USGS2018

Spectrally based bathymetric mapping of a dynamic, sand‐bedded channel: Niobrara River, Nebraska, USA

Methods for spectrally based mapping of river bathymetry have been developed and tested in clear‐flowing, gravel‐bed channels, with limited application to turbid, sand‐bed rivers. This study used hyperspectral images and field surveys from the dynamic, sandy Niobrara River to evaluate three depth retrieval methods. The first regression‐based approach, optimal band ratio analysis (OBRA), paired in situ depth measurements with image pixel values to estimate depth. The second approach used ground‐based field spectra to calibrate an OBRA relationship. The third technique, image‐to‐depth quantile transformation (IDQT), estimated depth by linking the cumulative distribution function (CDF) of depth to the CDF of an image‐derived variable. OBRA yielded the lowest depth retrieval mean error (0.005 m) and highest observed versus predicted R 2 (0.817). Although misalignment between field and image data did not compromise the performance of OBRA in this study, poor georeferencing could limit regression‐based approaches such as OBRA in dynamic, sand‐bedded rivers. Field spectroscopy‐based depth maps exhibited a mean error with a slight shallow bias (0.068 m) but provided reliable estimates for most of the study reach. IDQT had a strong deep bias but provided informative relative depth maps. Overprediction of depth by IDQT highlights the need for an unbiased sampling strategy to define the depth CDF. Although each of the techniques we tested demonstrated potential to provide accurate depth estimates in sand‐bed rivers, each method also was subject to certain constraints and limitations.

Nebraska↗

USGS2016

Effects of streamflows on stream-channel morphology in the eastern Niobrara National Scenic River, Nebraska, 1988–2010

The Niobrara River is an important and valuable economic and ecological resource in northern Nebraska that supports ecotourism, recreational boating, wildlife, fisheries, agriculture, and hydroelectric power. Because of its uniquely rich resources, a 122-kilometer reach of the Niobrara River was designated as a National Scenic River in 1991, which has been jointly managed by the U.S. Fish and Wildlife Service and National Park Service. To assess how the remarkable qualities of the National Scenic River may change if consumptive uses of water are increased above current levels, the U.S. Geological Survey, in cooperation with the National Park Service, initiated an investigation of how stream-channel morphology might be affected by potential decreases in summer streamflows. The study included a 65-kilometer segment in the wide, braided eastern stretch of the Niobrara National Scenic River that provides important nesting habitat for migratory bird species of concern to the Nation. The study focused on three river segments, separated at the confluences with two tributaries, Plum Creek and Long Pine Creek. With an overall temporal scope of 1988–2010 that includes a short interval preceding and a long interval following the Niobrara National Scenic River Designation Act of 1991, the study analyzed five separate time periods: 1988–93, 1994–99, 2000–3, 2004–6, and 2007–10, each of which ended with a year in which aerial photography coverage was available. Streamflow duration was analyzed for one streamgage upstream from the study area and two streamgages on tributary streams within the study area. Summer streamflows (July, August, and September) were targeted for analysis because median flows of the Niobrara River are lowest during those 3 months. In addition, peak flows during the study period were used to estimate bankfull discharge, which is one determinant of channel dimensions. Changes in channel morphology were examined using aerial photographs from 1993, 1999, 2003, 2006, and 2010 to measure channel width, area of islands, and incipient flood-plain surfaces, and to compute the braided index. Channel metrics were computed for each photography year and summarized by river segment. Additionally, at fixed-location cross sections, photography analysis identified localized geomorphic change to infer processes. Accuracy of geomorphic feature classification was estimated and the root-mean-square difference (RMSD) between aerial photographs was calculated to determine associated errors in channel metric calculations. The horizontal accuracy of boundaries delineated in the classification was estimated as 5 meters (m) for boundaries based on 1993 aerial photography and 4 m for all other aerial photography. The RMSD between aerial photography years ranged from 3.04 m to 4.16 m. The largest measurable changes in channel metrics were measured between 1993 and 1999 and between 1999 and 2003. Between 1993 and 1999, average total channel width increased by 9 m (3 percent) and 14 m (5 percent) in segments 2 and 3, respectively; average active channel width increased by 13 m (5 percent) in segment 3 and decreased by 6 m (4 percent) in segment 1; and incipient flood-plain-surface area increased by 40, 44, and 33 percent in segments 1, 2, and 3, respectively. Changes in channel metrics between 1999 and 2003 included a decrease in average total channel width of 14 m (5 percent) in segment 2; a decrease in active channel widths of 8 m (3 percent) and 6 m (2 percent) in segments 2 and 3, respectively; and an increase of 5 m (3 percent) in segment 1. Incipient flood-plain areas decreased by 22 and 33 percent in segments 1 and 2, respectively, and increased by 42 percent in segment 3. Large changes were measured between 1993 and 1999, and between 1999 and 2003, at many of the fixed-location cross sections. Large changes (that is, greater than 25 percent) in total channel width were measured in all three segments between 1993 and 1999 and again between 1999 and 2003; large increases were dominant between 1993 and 1999 and large decreases were dominant between 1999 and 2003. Segment 1 was the most susceptible to localized changes as there was only one period (between 2003 and 2006) in which the active channel width largely changed in fewer than 10 percent of the cross sections. Changes in channel metrics generally corresponded to changes in streamflow conditions, but other than changes in incipient flood-plain area, these changes were small and were not measured in all three segments simultaneously. Increases in total channel width (except in segment 1) and incipient flood-plain area between 1993 and 1999 corresponded to increases in streamflow. Channel narrowing (except in segment 1) between 1999 and 2003 corresponded to lower summer streamflows and extended durations of very low summer streamflow. Although the pattern of low summer streamflow and extended durations of very low summer streamflow continued during the 2004–6 period and at the beginning of the 2007–10 period, no further narrowing was measured. Consistent tributary summer inflows help to explain the resistance of segments 2 and 3 to further narrowing. Because segment 1 is already much narrower than segments 2 and 3, its average current velocity is likely to be swifter and, therefore, competent to offset further effects of the processes that led to its narrowness.

Nebraska↗

USGS2015

Characteristics of sediment transport at selected sites along the Missouri River, 2011–12

Extreme flooding in the Missouri River in 2011, followed by a year of more typical streamflows in 2012, allowed the sediment-transport regime to be compared between the unprecedented conditions of 2011 and the year immediately following the flooding. As part of a cooperative effort between the U.S. Geological Survey and the U.S. Army Corps of Engineers, this report follows up U.S. Geological Survey Scientific Investigations Report 2013–5006 by comparing sediment transport between years and among sampling sites spanning the Garrison Segment in North Dakota, the Gavins Point Segment downstream from Lewis and Clark Lake, and a part of the Channelized Segment along the Nebraska-Iowa border. Suspended sediment, bed material, bedload, and streamflow data from June 2011 through November 2012 were designated as “measured” total loads, wash loads, and bed-material loads; and, alternatively, were applied to the Modified-Einstein Procedure to compute sediment loads that were designated as “estimated” total loads. Beyond the expected result that sediment loads were much lower during typical streamflows than those measured during the flooding, the measured data indicated some localized sediment-transport processes for further examination. Extreme and prolonged flooding can temporarily deplete sediment supplies locally, and evidence indicating such depletion was present at some sites. Unexpectedly high bed-material loads in the Gavins Point Segment may reflect episodic bar erosion just upstream from the sampling site. The relative contribution of bedload was typically 10 percent or less of the total load during the flooding. Following the flooding, this relative amount increased at some sites but not others, the reasons for which are possibly related to differences in stream velocity. Ultimately, the bedload decreased as it entered the Channelized Segment because of increased velocity and the turbulent mixing ability of the river as compared to the Gavins Point Segment. This turbulent mixing may also convert bed-material load into wash load, thereby rendering those sediments unavailable for creating sandbars and other bedforms. Though some of the sampling data support this premise, it was not consistently manifested by differences between the sediment load of the two segments during typical-streamflow conditions. The Modified-Einstein Procedure tended to predict greater total-sediment loads when compared to measured values. These differences may be the result of sediment deficits in the Missouri River that lead to an overprediction by the Modified-Einstein Procedure, the unsampled zone above the streambed that leads to an underprediction by the suspended sampler, or general uncertainty in the sampling approach. The differences between total-sediment load obtained through measurements and that estimated from applied theoretical procedures such as the Modified-Einstein Procedure pose a challenge for reliably characterizing total-sediment transport. Though it is not clear which of the two techniques is more accurate, the general tendency of the two to be within an order of magnitude of one another may be adequate for many sediment studies.

Iowa, Kansas, Missouri, Nebraska, North Dakota, So↗

USGS2014

The influence of controlled floods on fine sediment storage in debris fan-affected canyons of the Colorado River basin

Prior to the construction of large dams on the Green and Colorado Rivers, annual floods aggraded sandbars in lateral flow-recirculation eddies with fine sediment scoured from the bed and delivered from upstream. Flows greater than normal dam operations may be used to mimic this process in an attempt to increase time-averaged sandbar size. These controlled floods may rebuild sandbars, but sediment deficit conditions downstream from the dams restrict the frequency that controlled floods produce beneficial results. Here, we integrate complimentary, long-term monitoring data sets from the Colorado River in Marble and Grand Canyons downstream from Glen Canyon dam and the Green River in the Canyon of Lodore downstream from Flaming Gorge dam. Since the mid-1990s, several controlled floods have occurred in these canyon rivers. These controlled floods scour fine sediment from the bed and build sandbars in eddies, thus increasing channel relief. These changes are short-lived, however, as interflood dam operations erode sandbars within several months to years. Controlled flood response and interflood changes in bed elevation are more variable in Marble Canyon and Grand Canyon, likely reflecting more variable fine sediment supply and stronger transience in channel bed sediment storage. Despite these differences, neither system shows a trend in fine-sediment storage during the period in which controlled floods were monitored. These results demonstrate that controlled floods build eddy sandbars and increase channel relief for short interflood periods, and this response may be typical in other dam-influenced canyon rivers. The degree to which these features persist depends on the frequency of controlled floods, but careful consideration of sediment supply is necessary to avoid increasing the long-term sediment deficit.

Arizona, Colorado↗

USGS2013

Sediment transport and deposition in the lower Missouri River during the 2011 flood

Floodwater in the Missouri River in 2011 originated in upper-basin regions and tributaries, and then travelled through a series of large flood-control reservoirs, setting records for total runoff volume entering all six Missouri River main-stem reservoirs. The flooding lasted as long as 3 months. The U.S Geological Survey (USGS) examined sediment transport and deposition in the lower Missouri River in 2011 to investigate how the geography of floodwater sources, in particular the decanting effects of the Missouri River main-stem reservoir system, coupled with the longitudinal characteristics of civil infrastructure and valley-bottom topography, affected sediment transport and deposition in this large, regulated river system. During the flood conditions in 2011, the USGS, in cooperation with the U.S. Army Corps of Engineers, monitored suspended-sediment transport at six primary streamgages along the length of the lower Missouri River. Measured suspended-sediment concentration (SSC) in the lower Missouri River varied from approximately 150 milligrams per liter (mg/L) to 2,000 mg/L from January 1 to September 30, 2011. Median SSC increased in the downstream direction from 355 mg/L at Sioux City, Iowa, to 490 mg/L at Hermann, Missouri. The highest SSCs were measured downstream from Omaha, Nebraska, in late February when snowmelt runoff from tributaries, which were draining zones of high-sediment production, was entering the lower Missouri River, and releases of water at Gavins Point Dam were small. The combination of dilute releases of water at Gavins Point Dam and low streamflows in lower Missouri River tributaries caused sustained lowering of SSC at all streamgages from early July through late August. Suspended-sediment ranged from 5 percent washload (PW; percent silt and clay) to as much as 98 percent in the lower Missouri River from January 1 to September 30, 2011. Median PW increased in the downstream direction from 24 percent at Sioux City, Iowa, to 78 percent at Hermann, Missouri. Measurements made in early January, when SSC was low, indicate that suspended sediment mostly was composed of bed material, but by mid-February, runoff from the plains caused PW to increase at most streamgages. Total suspended-sediment discharge (SSD) during water year 2011 at the selected streamgages in the lower Missouri River ranged from approximately 29 to 64 million tons. Total estimated SSD had the lowest exceedance frequencies in the reaches between Gavins Point Dam and Nebraska City, Nebraska, but exceedance frequencies increased substantially downstream. In 2011, total SSD with low exceedance frequencies were reported at Sioux City, Iowa, Omaha, Nebraska, and Nebraska City, Nebraska, despite moderate-to-high exceedance frequencies for annual average SSC, indicating that the duration of high-magnitude flooding was the primary driver of total SSD. Comparison of median SSC for samples from water year 2011 with samples in the 20 years prior indicated that median SSC for high-action streamflows (streamflows likely to produce a stage exceeding the National Weather Service’s “action stage”) in 2011 were lower than those typical for high-action streamflows. Multiple-comparison analysis indicated that median SSC values for low-action streamflows (streamflows likely to produce stages lower than the National Weather Service’s “action stage”) and high-action streamflows sampled in 2011 at 4 of 6 streamgages were not significantly distinguishable from median SSC values for low-action streamflows in the previous 20 years. Longitudinal comparison of streamflow and SSD exceedance frequencies for 2011 with corresponding frequencies for 2008 and 1993 indicated the important role of tributary contributions to total SSD in the lower Missouri River. In 1993 and 2008, tributaries were the primary source of floodwater in the lower Missouri River, which resulted in a 20-fold increase in total SSD from Sioux City, Iowa, to Hermann, Missouri. In 2011, releases at Gavins Point Dam were the primary source of floodwater in the lower Missouri River, and total SSD at Hermann, Missouri, was only twice that estimated for Sioux City, Iowa. Sand deposition was estimated using analysis of multispectral satellite imagery collected in October and November 2011. Distributions of sand in the flood plain of the lower Missouri River also were quantified in relation to distance from the banks of the main channel for seven discrete river segments bounded by Gavins Point Dam and selected downstream tributaries. The areal extent of overbank flooding and flood-plain sand deposits increased downstream from Sioux City, Iowa to a broad peak near Rulo, Nebraska, and then decreased to levels near the lower limit of quantification downstream from Kansas City, Missouri. Most of the flood plain inundation and sediment-deposition damage to agricultural fields was observed between river miles 480 and 700, where 2011 peak streamflows had low exceedance frequencies, and the lower Missouri River channel was less incised or had aggraded recently. As channel capacity increased in the downstream direction, the relative magnitude of the flood decreased downstream, and overbank flooding was less extensive. In the constricted reaches, flood-plain sand deposits mainly were observed in association with levee breaks.

Iowa, Kansas, Missouri, Montana, Nebraska, North D↗

USGS2013

Characteristics of sediment transport at selected sites along the Missouri River during the high-flow conditions of 2011

During 2011, many tributaries in the Missouri River Basin experienced near record peak streamflow and caused flood damage to many communities along much of the Missouri River from Montana to the confluence with the Mississippi River. The large runoff event in 2011 provided an opportunity to examine characteristics of sediment transport in the Missouri River at high-magnitude streamflow and for a long duration. The purpose of this report is to describe sediment characteristics during the 2011 high-flow conditions at six selected sites on the Missouri River, two in the middle region of the basin between Lake Sakakawea and Lake Oahe in North Dakota, and four downstream from Gavins Point Dam along the Nebraska-South Dakota and Nebraska-Iowa borders. A wider range in suspended-sediment concentration was observed in the middle segment of the Missouri River compared to sites in the lower segment. In the middle segment of the Missouri River, suspended-sediment concentrations increased and peaked as flows increased and started to plateau; however, while flows were still high and steady, suspended-sediment concentrations decreased and suspended-sediment grain sizes coarsened, indicating the decrease possibly was related to fine-sediment supply limitations. Measured bedload transport rates in the lower segment of the Missouri River (sites 3 to 6) were consistently higher than those in the middle segment (sites 1 and 2) during the high-flow conditions in 2011. The median bedload transport rate measured at site 1 was 517 tons per day and at site 2 was 1,500 tons per day. Measured bedload transport rates were highest at site 3 then decreased downstream to site 5, then increased at site 6. The median bedload transport rates were 22,100 tons per day at site 3; 5,640 tons per day at site 4; 3,930 tons per day at site 5; and 8,450 tons per day at site 6. At the two sites in the middle segment of the Missouri River, the greatest bedload was measured during the recession of the streamflow hydrograph. A similar pattern was observed at sites 3–5 in the lower segment of the Missouri River, where the greatest bedload was measured later in the event on the recession of the streamflow hydrograph, although the change in bedload was not as dramatic as observed at the sites in the middle segment of the Missouri River. With the exception of site 3, the total-sediment load on the Missouri River was highest at the beginning of the high-flow event and decreased as streamflow decreased. In the middle segment of the Missouri River, measured total-sediment load ranged from 2,320 to 182,000 tons per day at site 1 and from 3,190 to 279,000 tons per day at site 2. In the lower segment of the Missouri River, measured total-sediment load ranged from 50,600 to 223,000 tons per day at site 4; from 23,500 to 403,000 tons per day at site 5; and from 52,700 to 273,000 tons per day at site 6. The total-sediment load was dominated by suspended sediment at all of the sites measured on the Missouri River in 2011. In general, the percentage of total-sediment load that was bedload increased as the streamflow decreased, although this pattern was more prevalent at sites in the middle segment than those in the lower segment. The suspended-sediment load comprised an average of 93 percent of the total load, with the exception of site 3, where the suspended-sediment load comprised only 72 percent of the total-sediment load.

Missouri River↗

USGS2013

Emergent sandbar dynamics in the lower Platte River in eastern Nebraska: methods and results of pilot study, 2011

The lower Platte River corridor provides important habitats for two State- and federally listed bird species: the interior least tern (terns; Sternula antillarum athallassos) and the piping plover (plovers; Charadrius melodus). However, many of the natural morphological and hydrological characteristics of the Platte River have been altered substantially by water development, channelization, hydropower operations, and invasive vegetation encroachment, which have decreased the abundance of high-quality nesting and foraging habitat for terns and plovers. The lower Platte River (LPR), defined as 103 miles (mi) of the Platte River between its confluence with the Loup River and its confluence with the Missouri River, has narrowed since the late-19th and early-20th centuries, yet it partially retains many geomorphologic and hydrologic characteristics important to terns and plovers. These birds nest on the sandbars in the river and along shorelines at sand- and gravel-pit lakes in the adjacent valley. The need to balance continued economic, infrastructure, and resource development with the conservation of important physical and aquatic habitat resources requires increased understanding of the physical and biological dynamics of the lower Platte River. Spatially and temporally rich datasets for emergent sandbar habitats are necessary to quantify emergent sandbar dynamics relative to hypothesized controls and stressors. In cooperation with the Lower Platte South Natural Resources District, the U.S. Geological Survey initiated a pilot study of emergent sandbar dynamics along a 22-mi segment of the LPR downstream from its confluence with Salt Creek, near Ashland, Nebraska. The purposes of the study were to: (1) develop methods to rapidly assess sandbar geometries and locations in a wide, sand-bed river, and (2) apply and validate the method to assess emergent sandbar dynamics over three seasons in 2011. An examination of the height of sandbars relative to the local stage of the formative discharge event, and how subsequent river discharges, of both high and low magnitude, alter sandbar geometries and abundance within the LPR was of particular interest. A “rapid-assessment” method was developed with the goal of characterizing the spatial distribution and habitat-relevant geometries of the complete population of sandbars along the study segment. Three primary measures were used to assess emergent sandbar dynamics in the study segment: sandbar area, sandbar height, and sandbar location. Data to derive these measures were collected during three, week-long survey periods in 2011, herein named “spring survey period,” “summer survey period,” and “fall survey period.” Emergent sandbars were grouped into one of three generalized types: (1) bank-attached, (2) island-attached, and (3) mid-channel.

Nebraska↗

USGS2012

Habitat use by a freshwater dolphin in the low-water season

1. Many river dolphin populations are most vulnerable during the low-water season when habitat is limited. Indus River dolphin habitat selection in the dry season was investigated using Generalized Linear Models of dolphin distribution and abundance in relation to physical features of river geomorphology and channel geometry in cross-section. 2. Dolphins selected locations in the river with significantly greater mean depth, maximum depth, cross-sectional area, and hydraulic radius, and significantly narrower river width and a lower degree of braiding than areas where dolphins were absent. They were also recorded with higher frequency at river constrictions and at confluences. 3. Channel cross-sectional area was the most important factor affecting dolphin presence and abundance, with the area of water below 1 m in depth exerting the greatest influence. Indus dolphins avoided channels with small cross-sectional area (<700 m 2 ), presumably owing to the risk of entrapment and reduced foraging opportunities. 4. Channel geometry had a greater ability to explain dolphin distribution than river geomorphology; however, both analyses indicated similar types of habitat selection. The dolphin–habitat relationships identified in the river geomorphology analysis were scale-dependent, indicating that dolphin distribution is driven by the occurrence of discrete small-scale features, such as confluences and constrictions, as well as by broader-scale habitat complexes. 5. There are numerous plans to impound or extract more water from the Indus River system. If low-water season flows are allowed to decrease further, the amount of deeper habitat will decline, there may be insufficient patches of suitable habitat to support the dolphin population through the low-water season, and dolphins may become isolated within deeper river sections, unable or unwilling to traverse through shallows between favourable patches of habitat.

Aquatic Conservation: Marine and Freshwater Ecosys↗