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Jared L. Bottcher

Publications and source records attributed to Jared L. Bottcher.

2 recordsLinked to original sources

Temporal and spatial distribution of endangered juvenile Lost River and shortnose suckers in relation to environmental variables in Upper Klamath Lake, Oregon: 2009 annual data summary

Lost River sucker (Deltistes luxatus) and shortnose sucker (Chasmistes brevirostris) were listed as endangered in 1988 for a variety of reasons including apparent recruitment failure. Upper Klamath Lake, Oregon, and its tributaries are considered the most critical remaining habitat for these two species. Age-0 suckers are often abundant in Upper Klamath Lake throughout the summer months, but catches decline dramatically between late August and early September each year. Similar declines of age-1 suckers between spring and late summer also occur annually. These rapid declines in catch rates and a lack of substantial recruitment into adult sucker populations in recent years suggests sucker populations experience high mortality between their first summer and first spawn. Summer age-0 sucker habitat use and distribution have been studied extensively, but many uncertainties remain about age-1 and older juvenile habitat use, distribution, and movement patterns within Upper Klamath Lake. This study was designed to examine seasonal changes in distribution of age-1 suckers in Upper Klamath Lake as they relate to depth and water quality. The results of our third annual spring and summer sampling effort are presented in this report. Catch data collected in 2009 indicate seasonal changes in age-1 and older juvenile sucker habitat use coincident with changes in water quality. Although age-1 sucker catch rates were again concentrated along the western shore in June and early July, as they were in 2007 and 2008, very few age-1 suckers were captured in Eagle Ridge Trench in 2009 - a deepwater area along the western shore extending from Howard Bay to Eagle Ridge Point. Instead, suckers in 2009 were concentrated in the relatively shallow bays along the western shore. Nevertheless, as dissolved-oxygen concentrations decreased in mid-July below sublethal thresholds around the Eagle Ridge Trench, age-1 suckers apparently moved away from the western shore, and subsequently were captured in main lake areas and the eastern shore. Age-1 suckers were noticeably absent from the tributaries of Upper Klamath Lake during periods of chronically low dissolved-oxygen concentrations in the lake, refuting a previously untested hypothesis that tributaries were important age-1 sucker refuge habitats. In addition, declines in overall catch rates for age-1 suckers in August and September, despite intensive sampling, indicates that the apparent declines in abundance may be due to increased mortality and not due to sampling the wrong environments or poor detection probability. The remote detection of an age-1 juvenile sucker tagged in Short Creek and subsequently recaptured in the Link River array, more than 30 kilometers away, indicates the capacity of juvenile suckers to migrate relatively long distances. This knowledge, coupled with other remotely detected suckers in the Williamson River, indicates that juvenile sucker movement in Upper Klamath Lake may be common. In order to better quantify movement and potentially survival, future research should focus on tagging more juvenile suckers and taking advantage of the significant passive integrated transponder tag infrastructure throughout Upper Klamath Lake and its tributaries. In this data summary, we also describe the distribution of age-0 suckers in Upper Klamath Lake and its tributaries. These data corroborate findings from 2007 and 2008, which describe age-0 sucker habitat as shallow relative to depths available in Upper Klamath Lake. Similar to age-1 suckers, age-0 sucker abundances also appeared to decline in late summer, despite continued sampling throughout Upper Klamath Lake and its tributaries. In addition to low dissolved-oxygen concentrations, increased opercle deformity and anchor worm (Lernaea spp.) infection rates, as well as increased abundances of fathead minnows and other piscivorous non-native fish, may provide potential insight into the causes of juvenile sucker rarity. Opercle deformity r

Open-File Report

Maintaining population persistence in the face of an extremely altered hydrograph: implications for three sensitive fishes in a tributary of the Green River, Utah

The ability of an organism to disperse to suitable habitats, especially in modified and fragmented systems, determines individual fitness and overall population viability. The bluehead sucker (Catostomus discobolus), flannelmouth sucker (Catostomus latipinnis), and roundtail chub (Gila robusta) are three species native to the upper Colorado River Basin that now occupy only 50% of their historic range. Despite these distributional declines, populations of all three species are present in the San Rafael River, a highly regulated tributary of the Green River, Utah, providing an opportunity for research. Our goal was to determine the timing and extent of movement, habitat preferences, and limiting factors, ultimately to guide effective management and recovery of these three species. In 2007-2008, we sampled fish from 25 systematically selected, 300-m reaches in the lower 64 km of the San Rafael River, spaced to capture the range of species, life-stages, and habitat conditions present. We implanted all target species with a passive integrated transponder (PIT) tag, installed a passive PIT tag antennae, and measured key habitat parameters throughout each reach and at the site of native fish capture. We used random forest modeling to identify and rank the most important abiotic and biotic predictor variables, and reveal potential limiting factors in the San Rafael River. While flannelmouth sucker were relatively evenly distributed within our study area, highest densities of roundtail chub and bluehead sucker occurred in isolated, upstream reaches characterized by complex habitat. In addition, our movement and length-frequency data indicate downstream drift of age-0 roundtail chub, and active upstream movement of adult flannelmouth sucker, both from source populations, providing the lower San Rafael River with colonists. Our random forest analysis highlights the importance of pools, riffles, and distance-to-source populations, suggesting that bluehead sucker and roundtail chub are habitat limited in the lower San Rafael River. These results suggest management efforts should focus on diversifying habitat, maintaining in-stream flow, and removing barriers to movement.

Utah