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Janet K. Thompson

Publications and source records attributed to Janet K. Thompson.

52 records · Page 3Linked to original sources
USGS2006

Near-Field Receiving Water Monitoring of trace metals and a benthic community near the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay, California: 2005

Trace elements in sediment and the clam Macoma petalum (formerly reported as Macoma balthica (Cohen and Carlton 1995)), clam reproductive activity and benthic, macroinvertebrate community structure are reported for a mudflat one kilometer south of the discharge of the Palo Alto Regional Water Quality Control Plant in South San Francisco Bay. This report includes data collected for the period January to December 2005, and extends a critical long-term biogeochemical record dating back to 1974. These data serve as the basis for the City of Palo Alto’s Near-Field Receiving Water Monitoring Program, initiated in 1994. Metal concentrations in both sediments and clam tissue during 2005 were consistent with results observed since 1990. Copper and zinc concentrations in sediment and bivalve tissue displayed a continued decrease over the last decade. In 2005, Cu concentrations were at or below the effects range-low (ERL) concentration (34 µg/g) for the entire year, the first time this has been observed. Also, zinc concentrations never exceeded the ERL (150 µg/g). Yearly average concentrations of copper, zinc and silver in Macoma petalum for 2005 were some of the lowest recorded since monitoring for metals began in 1975. The concentrations of mercury and selenium in sediments, during April and January 2004, respectively, were the highest values observed for these elements during this study. Later in 2005, concentrations decreased to historic levels. The increase in mercury and selenium in 2004 was not a permanent trend and concentrations of these elements in sediments and clams at Palo Alto remain similar to concentrations observed elsewhere in the San Francisco Bay. Analyses of the benthic-community structure of a mudflat in South San Francisco Bay over a 31-year period show that changes in the community have occurred concurrent with with reduced concentrations of metals in the sediment and in the tissues of the biosentinal clam Macoma petalum from the same area. Analysis of the reproductive activity of M. petalum shows increases in reproductive activity concurrent with the decline in metal concentrations in the tissues of this organism. Reproductive activity is presently stable with almost all animals initiating reproduction in the fall and spawning the following spring of most years. The community has shifted from being dominated by several opportunistic species to a community where the species are more similar in abundance, a pattern that suggests a more stable community that is subjected to less stress. In addition, two of the opportunistic species ( Ampelisca abdita and Streblospio benedicti ) that brood their young and live on the surface of the sediment in tubes have shown a continual decline in dominance coincident with the decline in metals. Heteromastus filiformis , a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying their eggs on or in the sediment has shown a concurrent increase in dominance. These changes in species dominance reflect a change in the community from one dominated by surface dwelling, brooding species to one with species with varying life history characteristics. For the first time since its invasion in 1986, the non-indigenous filter-feeding bivalve Corbula ( Potamocorbula ) amurensis has shown up in small but persistent numbers in the benthic community.

California↗
USGS2005

Preliminary results from a shallow water benthic grazing study

The nutrient-rich, shallow waters of San Francisco Bay support high rates of primary production, limited not by nutrients but by light availability and benthic grazing (Alpine and others 1992; Cloern 1982). Phytoplankton blooms are an important food source for upper trophic levels. Consequently animal populations, such as fish, may suffer under conditions of high benthic bivalve grazing. It has been hypothesized that several species of fish are suffering as a result of severe decreases in available phytoplankton since the introduction of Potamocorbula amurensis into San Francisco Bay (Feyrer 2003). The extent of reduction in phytoplankton biomass by benthic bivalves is dependent on both physical and biological factors in addition to their spatial and temporal variability. Physical factors identified as important include: (1) vertical mixing rates, which are a function of wind velocity, currents, and bottom roughness; (2) suspended sediment concentrations; and (3) phytoplankton settling rates. The biological factors controlling the extent of phytoplankton grazing include animal density and organism size, pumping rate, food type and concentration, metabolic demands, assimilation efficiency, and behaviour (Wildish and Kristmanson 1997). Several laboratory studies involving model and live clams have shown that benthic grazers can deplete phytoplankton in the water column (for example, Cole and others 1992). Initially, these studies assumed that the water column remained well mixed above benthic suspension feeders; therefore, parameters measured in the bulk water column were believed to be representative of available particle concentration. For this reason many relationships describing the influence of the bulk flow and bulk seston concentration on benthic grazers physiological processes exist (for example, Levinton 1991). Laboratory measurements using live animals have shown that filtration rates vary with free stream velocity (for example, Levinton 1991). Increases in current speed lead to an increase in filtration rate; however, several studies have shown that filtration may cease at some critical current speed. It has been suggested that resuspension, occurring as a result of high current speeds, may be a factor that negatively affects uptake (Cloern 1987; Levinton 1991). Several mechanisms have been invoked to explain the effects of low speed on growth rates of active suspension feeders. These mechanisms include the formation of a concentration boundary layer and the limiting horizontal flux of seston. It is now accepted that a combination of these factors dictates the growth success of benthic grazers in a particular area. Several field studies have shown that concentration boundary layers can form over benthic ecosystems (for example, Frechette and others 1989, Dolmer 2000); however, many of these studies have failed to measure the hydrodynamics needed to calculate benthic grazing rates. Furthermore, calculating benthic grazing rates with vertical measurements at a single point is problematic due to lack of knowledge of the horizontal gradients in seston (Thompson and others, forthcoming). Despite great improvements in our knowledge on the effects of benthic grazers on seston concentrations in water columns, the effects of different hydrodynamic conditions on grazing rates has not been formulated. This makes it difficult to assess the system-wide effect of the benthic ecosystem on phytoplankton concentrations. Furthermore, it affects our ability to predict the potential success of a benthic species, such as the invasive clams Corbicula fluminea and Potamocorbula amurensis. This paper presents the preliminary results of a control volume approach to elucidate the effect of different hydrodynamic conditions on the grazing rates of Corbicula fluminea.

California↗
USGS2004

Near-field receiving water monitoring of a benthic community near the Palo Alto Water Quality Control Plant in south San Francisco Bay: February 1974 through December 2003

Analyses of the benthic community structure of a mudflat in South San Francisco Bay over a 29-year period show that changes in the community have occurred concurrent with reduced concentrations of metals in the sediment and in the tissues of the biosentinal clam Macoma balthica from the same area. The community has shifted from being dominated by several opportunistic species to a community where the species are more similar in abundance, a pattern that could be indicative of a more stable community that is subjected to less stress. In addition, two of the opportunistic species (Ampelisca abdita and Streblospio benedicti) that brood their young and live on the surface of the sediment in tubes have shown a continual decline in dominance coincident with the decline in metals. Heteromastus filiformis, a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying their eggs on or in the sediment has shown a concurrent increase in dominance. These changes in species dominance reflect a change in the community from one dominated by surface dwelling, brooding species to one with species with varying life history characteristics. Analysis of the reproductive activity of Macoma balthica shows increases in reproductive activity concurrent with the decline in metal concentrations in the tissue of this organism. Reproductive activity is presently stable with almost all animals reproducing during the two reproductive seasons (spring and fall) of most years. These findings are consistent with findings previously reported for the 1974 through 2002 period.

California↗
USGS2003

A study of model bivalve siphonal currents

We carried out experiments studying the hydrodynamics of bivalve siphonal currents in a laboratory flume. Rather than use living animals, we devised a simple, model siphon pair connected to a pump. Fluorescence-based flow visualization was used to characterize siphon-jet flows for several geometric configurations and flow speeds. These measurements show that the boundary-layer velocity profile, siphon height, siphon pair orientation, and size of siphon structure all affect the vertical distribution of the excurrent flow downstream of the siphon pair and the fraction of excurrent that is refiltered. The observed flows may effect both the clearance rate of an entire population of siphonate bivalves as well as the efficiency of feeding of any individual. Our results imply that field conditions are properly represented in laboratory flume studies of phytoplankton biomass losses to benthic bivalves when the shear velocity and bottom roughness are matched to values found in the field. Numerical models of feeding by a bivalve population should include an effective sink distribution which is created by the combined incurrent-excurrent flow field. Near-bed flows need to be accounted for to properly represent these benthic-pelagic exchanges. We also present velocity measurements made with a laser-Doppler anemometer (LDA) for a single configuration (siphons flush with bed, inlet downstream) that show that the siphonal currents have a significant local effect on the properties of a turbulent boundary layer.

Limnology and Oceanography↗
USGS2003

Assessing toxicant effects in a complex estuary--A case study of effects of silver on reproduction in the bivalve, Potamocurbula amurensis, in San Francisco Bay

Contaminant exposures in natural systems can be highly variable. This variability is superimposed upon cyclic variability in biological processes. Together, these factors can confound determination of contaminant effects. Long term, multidisciplined studies with high frequency sampling can be effective in overcoming such obstacles. While studying trace metal contamination in the tissues of the clam, Potamocorbula amurensis , in the northern reach of San Francisco Bay, an episode of high Ag concentrations was identified (maximum of 5.5 µg g −1 ) at two mid-estuary sites. High concentrations were not seen in clams up-estuary (maximum of 1.92 µg g −1 ) from these sites and were reduced down-estuary (maximum of 2.67 µg g −1 ). Silver is not common naturally in the environment, so its elevated presence is usually indicative of anthropogenic influences such as municipal and industrial discharge. Monthly sampling of reproductive status of clams characterized the reproductive cycle and differences in the patterns of reproductive activity that corresponded to changes in Ag tissue concentrations. The proportion of reproductive clams was less than 60% during periods when tissue concentrations were high (generally >2 µg g −1 ). When tissue concentrations of Ag decreased (≤1 µg g −1 ), the proportion of reproductive clams was 80 to 100%. A comparison between the annual proportion of reproductive clams and annual Ag tissue concentrations showed a significant negative correlation. No other measured environmental variables were correlated with reproductive impairment. The weight-of-evidence approach strongly supports a cause and effect relationship between Ag contamination and reduced reproductive activity in P. amurensis .

California↗
USGS2003

Near-field receiving water monitoring of a benthic community near the Palo Alto Water Quality Control Plant in South San Francisco Bay: February 1974 through December 2002

Analyses of the benthic community structure over a 28-year period show that changes in the community have occurred concurrent with reduced concentrations of metals in the sediment and in the tissues of the biosentinal clam Macoma balthica from the same area. The community has shifted from being dominated by several opportunistic species to a community where the species are more similar in abundance, a pattern that could be indicative of a more stable community that is subjected to less stress. In addition, two of the opportunistic species (Ampelisca abdita and Streblospio benedicti) that brood their young and live on the surface of the sediment in tubes have shown a continual decline in dominance coincident with the decline in metals. Heteromastus filiformis, a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying their eggs on or in the sediment has shown a concurrent increase in dominance. These changes in species dominance reflect a change in the community from one dominated by surface dwelling, brooding species to one with species with varying life history characteristics. Analysis of the reproductive activity of Macoma balthica shows increases in reproductive activity concurrent with the decline in metal concentrations in the tissue of this organism. Reproductive activity is presently stable with almost all animals reproducing during the two reproductive seasons (spring and fall) of most years. These findings are consistent with findings previously reported for the 1974 through 2000 period.

California↗
USGS2002

Hydrodynamics of larval settlement: The influence of turbulent stress events at potential recruitment sites

We describe a laboratory investigation into the effect of turbulent hydrodynamic stresses on clam larvae in the settlement phase of the recruitment process. A two-component laser-Doppler anemometer (LDA) was used to measure time histories of the instantaneous turbulence structure at potential recruitment sites within reconstructed beds of the adult Asian clam, Potamocorbula amurensis . Measurements were made for two flow speeds over beds with three different clam densities and two different clam heights. We analyze the statistical effect of the turbulence on the larval flux to the bed and on the probability of successful anchoring to the substrate. It is shown that the anchoring probability depends on the nature of the instantaneous stress events rather than on mean stresses. The instantaneous turbulence structure near the bed is altered by the flow rate and the spacing and height of adult clams living in the substrate. The ability to anchor quickly is therefore extremely important, since the time sequence of episodic turbulent stress events influences larval settlement success. The probability of successful larval settlement is predicted to decrease as the spacing between adults decreases, implying that the hydrodynamics impose negative feedback on clam bed aggregation dynamics.

Limnology and Oceanography↗
USGS2002

Influence of hydrologic processes on reproduction of the introduced bivalve Potamocorbula amurensis in northern San Francisco Bay, California

Monthly censusing of reproductive condition of the Asian clam Potamocorbula amurensis at four sites in northern San Francisco Bay over a 9-yr period revealed year-to-year differences in local reproductive activity that are associated with patterns of hydrologic variability. Between 1989 and 1992, Northern California experienced a drought, whereas the period between 1993 and 1998 was marked by a mix of wet and dry years. We took advantage of the extreme year-to-year differences to examine reproductive responses to river inflow patterns. Populations of P. amurensis at the upstream sites in Suisun Bay and Carquinez Strait were more reproductively active during wet years than dry years. Conversely, at the downstream site in San Pablo Bay, the population was more reproductively active during dry years than wet years. We suggest that the different reproductive patterns observed reflect the clam's response to different sources of food. During wet years, organic matter from the rivers augments food supplies in Suisun Bay. During dry years, when inflow into the San Francisco Bay Estuary from the rivers is reduced, water transported from the adjacent ocean into the estuary as far as San Pablo Bay provides a supplemental food supply for the local production. The populations take advantage of these spatially distinct food supplies by initiating and maintaining local reproductive activity. We conclude that the ability of P. amurensis to consume and use various types of food to regulate its reproductive activity is part of the reason for its success as an invasive species.

California↗
USGS2002

Near field receiving water monitoring of benthic community near the Palo Alto Water Quality Control Plant in south San Francisco Bay: February 1974 through December 2000

Analyses of the benthic community structure over a 26-year period show that changes in the community have occurred concurrent with reduced concentrations of metals in the sediment and in the tissues of the biosentinal clam Macoma balthica from the same area. The community has shifted from being dominated by several opportunistic species to a community where the species are more similar in abundance, a pattern that could be indicative of a more stable community that is subjected to less stress. In addition, two of the opportunistic species (Ampelisca abdita and Streblospio benedicti) that brood their young and live on the surface of the sediment in tubes have shown a continual decline in dominance coincident with the decline in metals. Heteromastus filiformis, a subsurface polychaete worm that lives in the sediment, consumes sediment and organic particles residing in the sediment, and reproduces by laying their eggs on or in the sediment has shown a concurrent increase in dominance. These changes in species dominance reflect a change in the community from one dominated by surface dwelling, brooding species to one with species with varying life history characteristics. Analysis of the reproductive activity of Macoma balthica shows increases in reproductive activity concurrent with the decline in metal concentrations in the tissue of this organism. Reproductive activity is presently stable with almost all animals reproducing during the two reproductive seasons (spring and fall) of most years.

California↗
USGS2001

Behind the energetics of the asiatic clam, Potamocorbula amurensis, in San Francisco Bay

The Asian clam (Potamocorbula amurensis) has played a key role in the food web of northern San Francisco Bay since its invasion in the fall of 1986. It has been associated with a dramatic decline in primary production, loss of a zooplankton species and a native mysid shrimp, the probable decline in striped bass, and has introduced alternative pathways for contaminant cycling in the bay food web.

Interagency Ecological Program Newsletter↗
USGS1990

Remarkable invasion of San Francisco Bay (California, USA), by the Asian clam Potamocorbula amurensis. I. Introduction and dispersal

The euryhaline bivalve mollusc Potamocorbula amurensis (family Corbulidae), a native of China, Japan, and Korea, has recently appeared and become very abundant in San Francisco Bay. This clam appears to have been introduced as veliger larvae in the seawater ballast of cargo vessels. It was first collected in northern San Francisco Bay in late 1986. P, amurensis then spread throughout the estuary within 2 yr and reached densities at some sites exceeding 10 000 m -2 It lives primarily in the subtidal on all substrates (mud, sand, peat, and clay) and is found in the full range of bay salinities (< 1 to 33%). Its explosive increase in abundance and spread may result in major alterations of the San Francisco Bay estuary ecosystem. These could include changes in (1) trophic dynamics (through competition with other suspension-feeding and deposit-feeding infauna; changes in benthic community energy flow; availability of a new and abundant prey item for birds, fish, and crabs; and reduction - as a result of its filter feeding - of phytoplankton standmg stock) and (2) benthic dynamics (through inhibition and/or enhancement of infauna due to substrate destabilization; alteration of suspended sediment load of near-bottom water; and change of sediment surface redox balance). The early detection of the appearance and spread of P. amurensis in San Francisco Bay makes this one of the best documented invasions of any estuary in the world.

California↗
USGS1990

Remarkable invasion of San Francisco Bay (California, USA) by the Asian clam Potamocorbula amurensis . II. Displacement of a former community

Long-term macrobenthic sampling at a site in northern San Francisco Bay has provided an unusual opportunity for documenting the time course of an invasion by a recently introduced Asian clam Potamocorbula arnurensis . Between 1977, when sampling began, and 1986, when the new clam was first discovered, the benthic community varied predictably in response to river inflow. During years of normal or high river inflow, the community consisted of a few brackish or freshwater species. During prolonged periods of low river inflow, the number of species doubled as estuarine species (e.g. Mya arenana ) migrated up the estuary. In June 1987, at the beginning of the longest dry period in recent decades, large numbers (> 12 000 m -2 ) of juvenile P. arnurensis were discovered at the site. By midsummer 1988 the new clam predominated (> 95 %) in both total number of individuals and biomass, and the expected dry-period estuarine species did not become re-established. The rapid rise of P. arnurensis to numerical dominance throughout the region of the original introduction was probably facilitated by the fact that this region of the bay had been rendered nearly depauperate by a major flood in early 1986. Once introduced, the clam had sufficient time (> 1 yr) to become well established before the salinity regime was appropriate for the return of the estuarine species. Subsequently, the new clam was apparently able to prevent the return of the dry-period community. Its ability to live in low salinity water (< 1 %o) suggests that P. amurensis may not be displaced with the return of normal winter river flow and, therefore, may have permanently changed benthic community dynamics in this region of San Francisco Bay.

Marine Ecology Progress Series↗
USGS1985

Persistence of an introduced mud flat community in south San Francisco Bay, California

The benthic invertebrate community inhabiting the extensive and sedimentologically homogeneous mudflats of South San Francisco Bay has demonstrated a high degree of constancy in both species composition and relative abundance among species throughout 10 yr of observation. The community, composed predominantly of introduced species with opportunistic lifestyles, is dominated numerically by Gemma gernma , Ampelisca abdita , and Streblospio benedicti . The key to the persistent co-occurrence of these species on the mudflats seems to lie in the combination of (1) the recurrence of minor disturbances of the mudflat habitat (e.g. sediment deposition/erosion, inundation by low-salinity water) on time scales comparable to that of life cycles; (2) opportunistic life history strategies (rapid maturity, brooding of young, multiple generations each year, ease of local dispersal of both juveniles and adults) that permit continued colonization of the mudflat surface or rapid recolonization after disturbances. Only 1 of the 3 numerically-dominant species. A. abdita , displays an annual periodicity in abundance. S. benedicti and G. gemma , through broadly flexible reproductive strategies permitted in the mild San Francisco climate, can exhibit strong recruitment at any time between spring and autumn. The most extreme community changes, involving temporary reduction or elimination of normally dominant populations, occurred as a result of anomalous disturbances such as unusual buildup and decay of an algal mat during 1 summer and prolonged periods of unusually high freshwater inflow during 2 successive winters. The introduced opportunists routinely co-occur at high densities. However, one of these, the tube-dwelling amphipod A. abdita , may control the abundance of the native mollusk Macoma balthica .

Marine Ecology Progress Series↗