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James L. Orlando

Publications and source records attributed to James L. Orlando.

At least 37 records · Page 2Linked to original sources
USGS2013

A compilation of U.S. Geological Survey pesticide concentration data for water and sediment in the Sacramento–San Joaquin Delta region: 1990–2010

Beginning around 2000, abundance indices of four pelagic fishes (delta smelt, striped bass, longfin smelt, and threadfin shad) within the San Francisco Bay and Sacramento–San Joaquin Delta began to decline sharply (Sommer and others, 2007). These declines collectively became known as the pelagic organism decline (POD). No single cause has been linked to this decline, and current theories suggest that combinations of multiple stressors are likely to blame. Contaminants (including current-use pesticides) are one potential stressor being investigated for its role in the POD (Anderson, 2007). Pesticide concentration data collected by the U.S. Geological Survey (USGS) at multiple sites in the delta region over the past two decades are critical to understanding the potential effects of current-use pesticides on species of concern as well as the overall health of the delta ecosystem. In April 2010, a compilation of contaminant data for the delta region was published by the State Water Resources Control Board (Johnson and others, 2010). Pesticide occurrence was the major focus of this report, which concluded that “there was insufficient high quality data available to make conclusions about the potential role of specific contaminants in the POD.” The report cited multiple sources; however, data collected by the USGS were not included in the publication even though these data met all criteria listed for inclusion in the report. What follows is a summary of publicly available USGS data for pesticide concentrations in surface water and sediments within the Sacramento–San Joaquin Delta region from the years 1990 through 2010. Data were retrieved though the USGS National Water Information System (NWIS) database, a publicly available online-data repository (U.S. Geological Survey, 1998), and from published USGS reports (also available online at http://pubs.er.usgs.gov/). The majority of the data were collected in support of two long term USGS monitoring programs—National Water Quality Assessment Program (NAWQA; http://water.usgs.gov/ nawqa/) and National Stream Quality Accounting Network (NASQAN; http://water.usgs.gov/nasqan/)—and through projects associated with the USGS Toxics Substances Hydrology Program (http://toxics.usgs.gov/). In addition, data were collected during multiple research projects that were supported by various federal, state, and local agencies. Although these data have been previously published in some form, it is hoped that by focusing on samples collected within the delta region and presenting these data in a concise format, they will be a valuable resource for scientists, resource managers, and members of the public working to understand the role of pesticides in the POD and their potential effects on the overall health of the delta ecosystem.

California↗
USGS2013

Dissolved pesticide concentrations in the Sacramento-San Joaquin Delta and Grizzly Bay, California, 2011-12

Surface-water samples were collected from sites within the Sacramento-San Joaquin Delta and Grizzly Bay, California, during the spring in 2011 and 2012, and they were analyzed by the U.S. Geological Survey for a suite of 99 current-use pesticides and pesticide degradates. Samples were collected and analyzed as part of a collaborative project studying the occurrence and characteristics of phytoplankton in the San Francisco Estuary. Samples were analyzed by two separate laboratory methods employing gas chromatography/mass spectrometry or liquid chromatography with tandem mass spectrometry. Method detection limits ranged from 0.9 to 10.5 nanograms per liter (ng/L). Eighteen pesticides were detected in samples collected during 2011, and the most frequently detected compounds were the herbicides clomazone, diuron, hexazinone and metolachlor, and the diuron degradates 3,4-dichloroaniline and N-(3,4-dichlorophenyl)-N’-methylurea (DCPMU). Concentrations for all compounds were less than 75 ng/L, except for the rice herbicide clomazone and the fungicide tetraconazole, which had maximum concentrations of 535 and 511 ng/L, respectively. In samples collected in 2012, a total of 16 pesticides were detected. The most frequently detected compounds were the fungicides azoxystrobin and boscalid and the herbicides diuron, hexazinone, metolachlor, and simazine. Maximum concentrations for all compounds detected in 2012 were less than 75 ng/L, except for the fungicide azoxystrobin and the herbicides hexazinone and simazine, which were detected at up to 188, 134, and 140 ng/L, respectively.

California↗
USGS2013

Occurrence of fungicides and other pesticides in surface water, groundwater, and sediment from three targeted-use areas in the United States, 2009

Surface-water, groundwater, and suspended- and bedsediment samples were collected in three targeted-use areas in the United States where potatoes were grown during 2009 and analyzed for an extensive suite of fungicides and other pesticides by gas chromatograph/mass spectrometry and liquid chromatography with tandem mass spectrometry. Fungicides were detected in all environmental matrices sampled during the study. The most frequently detected fungicides were azoxystrobin, boscalid, chlorothalonil, and pyraclostrobin. Other pesticides that were detected frequently included amino phosphonic acid (AMPA), atrazine, metolaclor, and the organochlorine insecticide p,p’-DDT and its degradates p,p’-DDD and p,p’-DDE. A greater number of pesticides were detected in surface water relative to the other environmental matrices sampled, and at least one pesticide was detected in 62 of the 63 surfacewater samples. The greatest numbers of pesticides and the maximum observed concentrations for most pesticides were measured in surface-water samples from Idaho. In eight surface- water samples (six from Idaho and two from Wisconsin), concentrations of bifenthrin, metolachlor, or malathion exceeded U.S. Environmental Protection Agency freshwater aquatic-life benchmarks for chronic toxicity to invertebrates. Thirteen pesticides, including seven fungicides, were detected in groundwater samples. Shallow groundwater samples collected beneath recently harvested potato fields contained more pesticides and had higher concentrations of pesticides than samples collected from other groundwater sources sampled during the study. Generally, pesticide concentrations were lower in groundwater samples than in surfacewater or sediment samples, with the exception of the fungicide boscalid, which was found to have its highest concentration in a shallow groundwater sample collected in Wisconsin. Thirteen pesticides, including four fungicides, were detected in suspended-sediment samples. The most frequently detected compounds were the fungicides boscalid, pyraclostrobin, and zoxamide, and the degradates p,p’-DDD and p,p’-DDE. Twenty pesticides, including six fungicides, were detected in bed-sediment samples. The most frequently detected compounds were pyraclostrobin, p,p’-DDT, p,p’-DDD, and p,p’-DDE.

Idaho, Maine, Wisconsin↗
USGS2012

Comparison of stream invertebrate response models for bioassessment metric

We aggregated invertebrate data from various sources to assemble data for modeling in two ecoregions in Oregon and one in California. Our goal was to compare the performance of models developed using multiple linear regression (MLR) techniques with models developed using three relatively new techniques: classification and regression trees (CART), random forest (RF), and boosted regression trees (BRT). We used tolerance of taxa based on richness (RICHTOL) and ratio of observed to expected taxa (O/E) as response variables and land use/land cover as explanatory variables. Responses were generally linear; therefore, there was little improvement to the MLR models when compared to models using CART and RF. In general, the four modeling techniques (MLR, CART, RF, and BRT) consistently selected the same primary explanatory variables for each region. However, results from the BRT models showed significant improvement over the MLR models for each region; increases in R 2 from 0.09 to 0.20. The O/E metric that was derived from models specifically calibrated for Oregon consistently had lower R 2 values than RICHTOL for the two regions tested. Modeled O/E R 2 values were between 0.06 and 0.10 lower for each of the four modeling methods applied in the Willamette Valley and were between 0.19 and 0.36 points lower for the Blue Mountains. As a result, BRT models may indeed represent a good alternative to MLR for modeling species distribution relative to environmental variables.

California, Oregon↗
USGS2012

Occurrence of pesticides in water and sediment collected from amphibian habitats located throughout the United States, 2009-10

Water and bed-sediment samples were collected by the U.S. Geological Survey (USGS) in 2009 and 2010 from 11 sites within California and 18 sites total in Colorado, Georgia, Idaho, Louisiana, Maine, and Oregon, and were analyzed for a suite of pesticides by the USGS. Water samples and bed-sediment samples were collected from perennial or seasonal ponds located in amphibian habitats in conjunction with research conducted by the USGS Amphibian Research and Monitoring Initiative and the USGS Toxic Substances Hydrology Program. Sites selected for this study in three of the states (California, Colorado, and Orgeon) have no direct pesticide application and are considered undeveloped and remote. Sites selected in Georgia, Idaho, Louisiana, and Maine were in close proximity to either agricultural or suburban areas. Water and sediment samples were collected once in 2009 during amphibian breeding seasons. In 2010, water samples were collected twice. The first sampling event coincided with the beginning of the frog breeding season for the species of interest, and the second event occurred 10-12 weeks later when pesticides were being applied to the surrounding areas. Additionally, water was collected during each sampling event to measure dissolved organic carbon, nutrients, and the fungus, Batrachochytrium dendrobatidis , which has been linked to amphibian declines worldwide. Bed-sediment samples were collected once during the beginning of the frog breeding season, when the amphibians are thought to be most at risk to pesticides. Results of this study are reported for the following two geographic scales: (1) for a national scale, by using data from the 29 sites that were sampled from seven states, and (2) for California, by using data from the 11 sampled sites in that state. Water samples were analyzed for 96 pesticides by using gas chromatography/mass spectrometry. A total of 24 pesticides were detected in one or more of the 54 water samples, including 7 fungicides, 10 herbicides, 4 insecticides, 1 synergist, and 2 pesticide degradates. On a national scale, aminomethylphosphonic acid (AMPA), the primary degradate of the herbicide glyphosate, which is the active ingredient in Roundup®, was the most frequently detected pesticide in water (16 of 54 samples) followed by glyphosate (8 of 54 samples). The maximum number of pesticides observed at a single site was nine compounds in a water sample from a site in Louisiana. The maximum concentration of a pesticide or degradate observed in water was 2,880 nanograms per liter of clomazone (a herbicide) at a site in Louisiana. In California, a total of eight pesticides were detected among all of the low and high elevation sites; AMPA was the most frequently detected pesticide, but glyphosate was detected at the highest concentrations (1.1 micrograms per liter). Bed-sediment samples were analyzed for 94 pesticides by using accelerated solvent extraction, gel permeation chromatography for sulfur removal, and carbon/alumina stacked solid-phase extraction cartridges to remove interfering sediment matrices. In bed sediment, 22 pesticides were detected in one or more of the samples, including 9 fungicides, 3 pyrethroid insecticides, p,p' -dichlorodiphenyltrichloroethane ( p,p' -DDT) and its major degradates, as well as several herbicides. Pyraclostrobin, a strobilurin fungicide, and bifenthrin, a pyrethroid insecticide, were detected most frequently. Maximum pesticide concentrations ranged from less than their respective method detection limits to 1,380 micrograms per kilogram (tebuconazole in California). The number of pesticides detected in samples from each site ranged from zero to six compounds. The sites with the greatest number of pesticides were in Maine and Oregon with six pesticides detected in one sample from each state, followed by Georgia with four pesticides in one sample. For California, a total of 10 pesticides were detected among all sites, and 4 pesticides were detected at both low and high elevation sites; tebuconazole and pyraclostrobin were the two most frequently detected pesticides in California. For the other six selected states, the most frequently detected pesticides in bed sediment were pyraclostrobin (detected in 17 of 42 samples), bifenthrin (detected in 14 of 42 samples), and tebuconazole (detected in 10 of 42 samples). The fungus, Batrachochytrium dendrobatidis (Bd), was detected in water samples in sites from four of the seven states during 2009 and 2010, and the number of zoospore equivalents per liter of water in samples where Bd was detected ranged from 1.6 to 343. Bd was not detected in water samples from sites in Georgia, Louisiana, and Oregon.

Data Series↗
USGS2012

Understanding pesticides in California's Delta

The Sacramento-San Joaquin River Delta (Delta) is the hub of California’s water system and also an important habitat for imperiled fish and wildlife. Aquatic organisms are exposed to mixtures of pesticides that flow through the maze of Delta water channels from sources including agricultural, landscape, and urban pest-control applications. While we do not know all of the effects pesticides have on the ecosystem, there is evidence that they cause some damage to organisms in the Delta. Decades of USGS research have provided a good understanding of when, where, and how pesticides enter the Delta. However, pesticide use is continually changing. New field studies and methods are needed so that scientists can analyze which pesticides are present in the Delta, and at what concentrations, enabling them to estimate exposure and ultimate effects on organisms. Continuing research will provide resource managers and stakeholders with crucial information to manage the Delta wisely.

California↗
USGS2011

Trends in nutrient concentrations, loads, and yields in streams in the Sacramento, San Joaquin, and Santa Ana Basins, California, 1975-2004

A comprehensive database was assembled for the Sacramento, San Joaquin, and Santa Ana Basins in California on nutrient concentrations, flows, and point and nonpoint sources of nutrients for 1975-2004. Most of the data on nutrient concentrations (nitrate, ammonia, total nitrogen, orthophosphate, and total phosphorus) were from the U.S. Geological Survey's National Water Information System database (35.2 percent), the California Department of Water Resources (21.9 percent), the University of California at Davis (21.6 percent), and the U.S. Environmental Protection Agency's STOrage and RETrieval database (20.0 percent). Point-source discharges accounted for less than 1 percent of river flows in the Sacramento and San Joaquin Rivers, but accounted for close to 80 percent of the nonstorm flow in the Santa Ana River. Point sources accounted for 4 and 7 percent of the total nitrogen and total phosphorus loads, respectively, in the Sacramento River at Freeport for 1985-2004. Point sources accounted for 8 and 17 percent of the total nitrogen and total phosphorus loads, respectively, in the San Joaquin River near Vernalis for 1985-2004. The volume of wastewater discharged into the Santa Ana River increased almost three-fold over the study period. However, due to improvements in wastewater treatment, the total nitrogen load to the Santa Ana River from point sources in 2004 was approximately the same as in 1975 and the total phosphorus load in 2004 was less than in 1975. Nonpoint sources of nutrients estimated in this study included atmospheric deposition, fertilizer application, manure production, and tile drainage. The estimated dry deposition of nitrogen exceeded wet deposition in the Sacramento and San Joaquin Valleys and in the basin area of the Santa Ana Basin, with ratios of dry to wet deposition of 1.7, 2.8, and 9.8, respectively. Fertilizer application increased appreciably from 1987 to 2004 in all three California basins, although manure production increased in the San Joaquin Basin but decreased in the Sacramento and Santa Ana Basins from 1982 to 2002. Tile drainage accounted for 22 percent of the total nitrogen load in the San Joaquin River near Vernalis for 1985-2004. Nutrient loads and trends were calculated by using the log-linear multiple-regression model, LOADEST. Loads were calculated for water years 1975-2004 for 22 sites in the Sacramento Basin, 15 sites in the San Joaquin Basin, and 6 sites in the Santa Ana Basin. The average annual load of total nitrogen and total phosphorus for 1985-2004 in subbasins in the Sacramento and San Joaquin Basins were divided by their drainage areas to calculate average annual yield. Total nitrogen yields were greater than 2.45 tons per square mile per year [(tons/mi2)/yr] in about 61 percent of the valley floor in the San Joaquin Basin compared with only about 12 percent of the valley floor in the Sacramento Basin. Total phosphorus yields were greater than 0.34 (tons/mi2)/yr in about 43 percent of the valley floor in the San Joaquin Basin compared with only about 5 percent in the valley floor of the Sacramento Basin. In a stepwise multiple linear-regression analysis of 30 subbasins in the Sacramento and San Joaquin Basins, the most important explanatory variables (out of 11 variables) for the response variable (total nitrogen yield) were the percentage of land use in (1) orchards and vineyards, (2) row crops, and (3) urban categories. For total phosphorus yield, the most important explanatory variable was the amount of fertilizer application plus manure production. Trends were evaluated for three time periods: 1975-2004, 1985-2004, and 1993-2004. Most trends in flow-adjusted concentrations of nutrients in the Sacramento Basin were downward for all three time periods. The decreasing nutrient trends in the American River at Sacramento and the Sacramento River at Freeport for 1975-2004 were attributed to the consolidation of wastewater in the Sacramento metropolitan area in December 1982 to

California↗
USGS2009

Collection of pyrethroids in water and sediment matrices: Development and validation of a standard operating procedure

Loss of pyrethroid insecticides onto surfaces during sample collection can confound the interpretation of analytical and toxicity test results. Sample collection devices, container materials, and water matrix composition have a significant influence on the association of pyrethroids to container walls, which can be as high as 50 percent. Any sample collection method involving transfer through multiple containers or pieces of equipment increases the potential for pyrethroid loss. This loose 'surface-association' with container walls can be reversed through agitation. When sampling water matrices with pumps or autosamplers, no pyrethroids were lost as long as the water was moving continuously through the system. When collecting water matrices in containers, the material with the least amount of pyrethroid sorption is as follows: glass less than (<) plastic less than (<) Teflon. Additionally, pyrethroids were easier to re-suspend from the glass container walls. Since the amount of surface-association is proportional to the ratio of volume-to-contact-area of the sample, taking larger-volume field samples (greater than 3 liters) reduced pyrethroid losses to less than 10 percent. The amount of surface-association cannot be predicted easily because of the dependence on water matrix composition; samples with higher dissolved organic carbon or suspended-sediment concentrations were observed to have lower percent loss. Sediment samples were not affected by glass-container sorption (the only containers tested). Standardized sample-collection protocols are critical to yield accurate pyrethroid concentrations for assessment of potential effects, and have been summarized in an accompanying standard operating procedure.

Scientific Investigations Report↗
USGS2008

Level 1 water-quality inventory of baseline levels of pesticides in urban creeks: Golden Gate National Recreation Area and Presidio of San Francisco, California

To characterize baseline water-quality levels of pesticides in Golden Gate National Recreation Area and the Presidio of San Francisco, the U.S. Geological Survey collected and analyzed surface-water and bed-sediment samples at 10 creeks during February, April, and July 2006. Pesticide data were obtained using previously developed methods. Samples from sites in the Presidio were analyzed only for pyrethroid insecticides, whereas the remaining samples were analyzed for pyrethroids and additional current and historical-use pesticides. Pesticide concentrations were low in both the water (below 30 ng/L) and sediment (below 3 ng/g). The pyrethroid bifenthrin was detected in water samples from two sites at concentrations below 2 ng/L. Other compounds detected in water included the herbicides dacthal (DCPA) and prometryn, the insecticide fipronil, the insecticide degradates p,p'-DDE and fipronil sulfone, and the fungicides cyproconazole, myclobutanil and tetraconazole. The only pesticides detected in the sediment samples were p,p'-DDT and its degradates (p,p'-DDD and p,p'-DDE). Pesticide information from the samples collected can provide a reference point for future sampling and can help National Park Service managers assess the water quality of the urban creeks.

California↗
USGS2008

Pesticides in Water and Suspended Sediment of the Alamo and New Rivers, Imperial Valley/Salton Sea Basin, California, 2006-2007

Water and suspended-sediment samples were collected at eight sites on the Alamo and New Rivers in the Imperial Valley/Salton Sea Basin of California and analyzed for both current-use and organochlorine pesticides by the U.S. Geological Survey. Samples were collected in the fall of 2006 and spring of 2007, corresponding to the seasons of greatest pesticide use in the basin. Large-volume water samples (up to 650 liters) were collected at each site and processed using a flow-through centrifuge to isolate suspended sediments. One-liter water samples were collected from the effluent of the centrifuge for the analysis of dissolved pesticides. Additional samples were collected for analysis of dissolved organic carbon and for suspended-sediment concentrations. Water samples were analyzed for a suite of 61 current-use and organochlorine pesticides using gas chromatography/mass spectrometry. A total of 25 pesticides were detected in the water samples, with seven pesticides detected in more than half of the samples. Dissolved concentrations of pesticides observed in this study ranged from below their respective method detection limits to 8,940 nanograms per liter (EPTC). The most frequently detected compounds in the water samples were chlorpyrifos, DCPA, EPTC, and trifluralin, which were observed in more than 75 percent of the samples. The maximum concentrations of most pesticides were detected in samples from the Alamo River. Maximum dissolved concentrations of carbofuran, chlorpyrifos, diazinon, and malathion exceeded aquatic life benchmarks established by the U.S. Environmental Protection Agency for these pesticides. Suspended sediments were analyzed for 87 current-use and organochlorine pesticides using microwave-assisted extraction, gel permeation chromatography for sulfur removal, and either carbon/alumina stacked solid-phase extraction cartridges or deactivated Florisil for removal of matrix interferences. Twenty current-use pesticides were detected in the suspended-sediment samples, including pyrethroid insecticides and fungicides. Fourteen legacy organochlorine pesticides also were detected in the suspended-sediment samples. Greater numbers of current-use and organochlorine pesticides were observed in the Alamo River samples in comparison with the New River samples. Maximum concentrations of current-use pesticides in suspended-sediment samples ranged from below their method detection limits to 174 micrograms per kilogram (pendimethalin). Most organochlorine pesticides were detected at or below their method detection limits, with the exception of p,p'-DDE, which had a maximum concentration of 54.2 micrograms per kilogram. The most frequently detected current-use pesticides in the suspended-sediment samples were chlorpyrifos, permethrin, tetraconazole, and trifluralin, which were observed in more than 83 percent of the samples. The organochlorine degradates p,p'-DDD and p,p'-DDE were detected in all suspended-sediment samples.

Data Series↗
USGS2007

Box Model of a Series of Salt Ponds, as Applied to the Alviso Salt Pond Complex, South San Francisco Bay, California

This report documents the development and application of a box model to simulate water level, salinity, and temperature of the Alviso Salt Pond Complex in South San Francisco Bay. These ponds were purchased for restoration in 2003 and currently are managed by the U.S. Fish and Wildlife Service to maintain existing wildlife habitat and prevent a build up of salt during the development of a long-term restoration plan. The model was developed for the purpose of aiding pond managers during the current interim management period to achieve these goals. A previously developed box model of a salt pond, SPOOM, which calculates daily pond volume and salinity, was reconfigured to simulate multiple connected ponds and a temperature subroutine was added. The updated model simulates rainfall, evaporation, water flowing between the ponds and the adjacent tidal slough network, and water flowing from one pond to the next by gravity and pumps. Theoretical and measured relations between discharge and corresponding differences in water level are used to simulate most flows between ponds and between ponds and sloughs. The principle of conservation of mass is used to calculate daily pond volume and salinity. The model configuration includes management actions specified in the Interim Stewardship Plan for the ponds. The temperature subroutine calculates hourly net heat transfer to or from a pond resulting in a rise or drop in pond temperature and daily average, minimum, and maximum pond temperatures are recorded. Simulated temperature was compared with hourly measured data from pond 3 of the Napa?Sonoma Salt Pond Complex and monthly measured data from pond A14 of the Alviso Salt-Pond Complex. Comparison showed good agreement of measured and simulated pond temperature on the daily and monthly time scales.

Scientific Investigations Report↗
USGS2006

Seasonal changes in concentrations of dissolved pesticides and organic carbon in the Sacramento-San Joaquin delta, California, 1994-1996

The Sacramento-San Joaquin Delta (Delta) of California is an ecologically rich and hydrologically complex region that receives runoff from nearly one-quarter of the state. Water-quality studies of surface water in the region have found dissolved pesticides in winter storm runoff at concentrations toxic to some aquatic invertebrates. However, scientists have little information on pesticide concentrations in the Delta on a seasonal timescale or the importance of pesticide contributions from within-Delta sources. Consequently, the U.S. Geological Survey conducted a study from 1994 to 1996 during which water samples were collected seasonally from 31 sites located within the Delta and on major tributaries to the Delta. Water samples were analyzed for 20 current-use pesticides and dissolved organic carbon. During the study, 11 current-use pesticides were detected; maximum concentrations ranging from 17 ng/L (for trifluralin) to 1,160 ng/L (for metolachlor). The highest concentrations of five pesticides (carbaryl, carbofuran, metolachlor, molinate, and simazine) were greater than 900 ng/L. The greatest number of pesticides was detected in the summer of 1994, whereas the least number were detected in the winter of 1994. The herbicides metolachlor and simazine were the most frequently detected pesticides and were detected in five of the six sampling seasons. The herbicides molinate and EPTC were detected only during the three summer sampling seasons. A comparison of pesticides detected during the spring and summer of 1995 showed some seasonal variability. Comparison of the three summer seasons sampled showed that a larger number of pesticides were detected, and with generally higher maximum concentrations, in 1994 than in 1995 or 1996. Dissolved organic carbon (DOC) concentrations ranged, over the course of the study, from 1.4 mg/L to 10.4 mg/L, and had a median concentration of 3.8 mg/L. On a seasonal basis, the lowest maximum DOC concentrations occurred during the summer and winter of 1994. The highest median DOC concentration on a seasonal basis occurred in the spring of 1995. This previously unreported data is being published now to provide historical information on pesticide concentrations in the Delta to water managers and the scientific community.

Data Series↗
USGS2006

Results of analyses of the fungicide Chlorothalonil, its degradation products, and other selected pesticides at 22 surface-water sites in five Southern states, 2003-04

In accordance with the mission of the U.S. Geological Survey (USGS) Toxic Substances Hydrology Program, a pesticide study was conducted during 2003–04 to determine the occurrence of the fungicide chlorothalonil and its degradation products at 22 surface-water sites in five Southern States. Water-quality samples were collected during the peanut-growing season (June–September) in 2003. During the peanut-growing season in 2004, samples were collected after large storms. An analytical method was developed at the USGS Organic Geochemistry Research Laboratory in Lawrence, Kansas, to measure chlorothalonil and its degradation products by liquid chromatography/mass spectrometry (LC/MS). Chlorothalonil was detected in 4 of the 113 surface-water samples. The primary degradation product of chlorothalonil, 4-hydroxy-chlorothalonil, was detected in 26 of the 113 samples with concentrations ranging from 0.002 to 0.930 microgram per liter. The chlorothalonil degradation products, 1-amide-4-hydroxy-chorothalonil and 1,3-diamide-chlorothalonil, were detected in one water sample each at 0.020 and 0.161 microgram per liter, respectively. The USGS Methods and Research Development Group, Lakewood, Colorado, developed a custom method for chlorothalonil using gas chromatography/mass spectrometry (GC/MS) in an effort to achieve a lower laboratory reporting level (LRL) than the USGS National Water-Quality Laboratory (NWQL) schedule 2060, which analyzes the compound chlorothalonil at a LRL of 0.035 µg/L. The group succeeded in achieving a lower GC/MS reporting level of 0.01 µg/L. Chlorothalonil was detected in 5 of 68 water samples analyzed using the custom GC/MS method, whereas chlorothalonil was detected in 2 of 21 water samples analyzed using NWQL schedule 2060. In addition to analysis of chlorothalonil and its degradation products, samples were analyzed using the USGS NWQL schedules 2001 and 2060 for about 114 pesticides and their degradation products. Samples also were analyzed for dissolved organic carbon, suspended sediment, and percentage of silt- and clay-sized particles. Overall, it was found that chlorothalonil was detected only infrequently and at relatively low concentrations. Chlorothalonil’s major degradation product, 4-hydroxy-chlorothalonil, was detected most frequently, occurred generally at higher concentrations in water samples than did the parent fungicide, and the data from this study reaffirmed that it is the dominant degradation product of chlorothalonil in the peanut-growing environment.

Open-File Report↗
USGS2005

Concentrations of organic contaminants detected during managed flow conditions, San Joaquin River and Old River, California, 2001

Concentrations of organic contaminants were determined in water samples collected at six surface-water sites located along the San Joaquin and Old Rivers during April through June 2001. Water samples were collected, coincident with salmon smolt caging studies conducted by researchers from the Bodega Marine Laboratory at the University of California at Davis to characterize exposure of the salmon smolt to organic contaminants. Sampling occurred prior to, during, and following the implementation of managed streamflow conditions on the San Joaquin and Old Rivers as part of the Vernalis Adaptive Management Plan. Thirteen pesticides were detected in water samples collected during this study, and at least five pesticides were detected in each sample. The total number of pesticide detections varied little between river systems and between sites, but the maximum concentrations of most pesticides occurred in San Joaquin River samples. The total number of pesticides detected varied little over the three time periods. However, during the period of managed streamflow, the fewest number of pesticides were detected at their absolute maximum concentration. Nine wastewater compounds were detected during this study. Suspended-sediment concentrations were similar for the San Joaquin and Old Rivers except during the period of managed streamflow conditions, when suspended-sediment concentration was higher at sites on the San Joaquin River than at sites on the Old River. Values for water parameters (pH, specific conductance, and hardness) were lowest during the period of managed flows.

Data Series↗
USGS2005

South San Francisco Bay tidal marsh vegetation and elevation surveys-Corkscrew Marsh, Bird Island, and Palo Alto Baylands, California, 1983

Changes in the topography and ecology of the San Francisco Bay Estuary ('Estuary') during the past 200 years have resulted in the loss of nearly 80 percent of the historical salt marsh in the region. Currently, numerous projects are being undertaken by federal, state, and local governments in an attempt to restore wetland habitat and ecosystem function at a number of locations within the Estuary. Much information is needed concerning the historical topographic and ecologic characteristics of the Estuary to facilitate these restoration efforts. This report presents previously unpublished vegetation and elevation data collected in 1983 by the California State Lands Commission at Corkscrew marsh, Bird Island, and Palo Alto Baylands, all located in South San Francisco Bay. These precise and detailed elevation and plant surveys represent a snapshot of South Bay flora before invasion by the Atlantic smooth cordgrass, Spartina alterniflora. Such precise elevation data are rare for relatively undisturbed marshes in the San Francisco Bay; publication of these historical data may facilitate wetland restoration efforts. Marsh-surface and tidal-channel elevations were determined at a total of 962 stations by differential leveling to established tidal benchmark stations at each site and referenced to Mean Lower Low Water (MLLW) relative to the National Tidal Datum Epoch (1960-78). In addition, presence or absence of nine salt marsh species, percentage plant cover, and percentage bare soil were recorded for 1-square meter quadrats at 648 stations where elevations were determined. Collectively, over the three sites, salt marsh vegetation ranged in elevation from 0.98 to 2.94 m above MLLW. S. foliosa and Salicornia virginica were the most frequently observed plant species. Atriplex patula, Deschampsia cespitosa, and Limonium californicum were each recorded at only one of the three sites.

Data Series↗
USGS2005

Analysis of pesticides in surface water and sediment from Yolo Bypass, California, 2004-2005

Inputs to the Yolo Bypass are potential sources of pesticides that could impact critical life stages of native fish. To assess the direct inputs during inundation, pesticide concentrations were analyzed in water, in suspended and bed-sediment samples collected from six source watersheds to the Yolo Bypass, and from three sites within the Bypass in 2004 and 2005. Water samples were collected in February 2004 from the six input sites to the Bypass during the first flood event of the year representing pesticide inputs during high-flow events. Samples were also collected along a transect across the Bypass in early March 2004 and from three sites within the Bypass in the spring of 2004 under low-flow conditions. Low-flow data were used to understand potential pesticide contamination and its effects on native fish if water from these areas were used to flood the Bypass in dry years. To assess loads of pesticides to the Bypass associated with suspended sediments, large-volume water samples were collected during high flows in 2004 and 2005 from three sites, whereas bed sediments were collected from six sites in the fall of 2004 during the dry season. Thirteen current-use pesticides were detected in surface water samples collected during the study. The highest pesticide concentrations detected at the input sites to the Bypass corresponded to the first high-flow event of the year. The highest pesticide concentrations at the two sites sampled within the Bypass during the early spring were detected in mid-April following a major flood event as the water began to subside. The pesticides detected and their concentrations in the surface waters varied by site; however, hexazinone and simazine were detected at all sites and at some of the highest concentrations. Thirteen current-use pesticides and three organochlorine insecticides were detected in bed and suspended sediments collected in 2004 and 2005. The pesticides detected and their concentrations varied by site and sediment sample type. Trifluralin, p,p'-DDE, and p,p'-DDT were highest in the bed sediments, whereas oxyfluorfen and thiobencarb were highest in the suspended sediments. With the exception of the three organochlorine insecticides, suspended sediments had higher pesticide concentrations compared with bed sediments, indicating the potential for pesticide transport throughout the Bypass, especially during high-flow events. Understanding the distribution of pesticides between the water and sediment is needed to assess fate and transport within the Bypass and to evaluate the potential effects on native fish.

Scientific Investigations Report↗
USGS2004

Pesticide concentrations in water and in suspended and bottom sediments in the New and Alamo rivers, Salton Sea Watershed, California, April 2003

This report contains pesticide concentration data for water, and suspended and bed sediment samples collected in April 2003 from twelve sites along the New and Alamo Rivers in the Salton Sea watershed, in southeastern California. The study was done in collaboration with the California State Regional Water Quality Control Board, Colorado River Region, to assess inputs of current-use pesticides associated with water and sediment into the New and Alamo Rivers. Five sites along the New River and seven sites along the Alamo River, downstream of major agricultural drains, were selected and covered the lengths of the rivers from the international boundary to approximately 1.5 km from the river mouths. Sampling from bridges occurred at seven of the twelve sites. At these sites, streamflow measurements were taken. These same sites were also characterized for cross-stream homogeneity by measuring dissolved oxygen, pH, specific conductance, temperature, and suspended solids concentration at several vertical (depths) and horizontal (cross-stream) points across the river. Large volume water samples (200?300 L) were collected for isolation of suspended sediments by flow-through centrifugation. Water from the outflow of the flow-through centrifuge was sampled for the determination of aqueous pesticide concentrations. In addition, bottom sediments were sampled at each site. Current-use pesticides and legacy organochlorine compounds (p,p'-DDT, p,p'-DDE and p,p'-DDD) were extracted from sediments and measured via gas chromatography/mass spectrometry (GC/MS). Organic carbon and percentage of fines were also determined for suspended and bottom sediments. Cross-stream transects of dissolved constituents and suspended sediments showed that the rivers were fairly homogeneous at the sites sampled. Streamflow was higher at the outlet sites, with the Alamo River having higher flow (1,240 cfs) than the New River (798 cfs). Twelve current-use pesticides, one legacy organochlorine compound (p,p'-DDE), and the additive piperonyl butoxide were detected in water samples. Trifluralin was found in the highest concentration of all detected compounds (68.5?599 ng/L) at all sites in both rivers, except for the international boundary sites. Atrazine was also detected in high concentration (51.0?285 ng/L) at several sites. The outlet sites had among the highest numbers of pesticides detected and the international boundary sites had the lowest numbers of pesticides detected for both rivers. The numbers of pesticides detected were greater for the Alamo River than for the New River. Six current-use pesticides and two legacy organochlorines (p,p'-DDE and p,p'-DDD) were found associated with suspended and bed sediments. The DDT metabolite p,p'-DDE was detected in all suspended and bed sediments from the Alamo River, but only at two sites in the New River. Dacthal, chlorpyrifos, pendimethalin, and trifluralin were the most commonly detected current-use pesticides. Trifluralin was the compound found in the highest concentrations in suspended (14.5?120 ng/g) and bed (1.9?9.0 ng/g) sediments. The sites along the Alamo River had more frequent detections of pesticides in suspended and bed sediments when compared with the New River sites. The greatest number of pesticides that were detected in suspended sediments (seven) were in the samples from the Sinclair Road and Harris Road sites. For bottom sediments, the Alamo River outlet site had the greatest number of pesticide detections (eight).

Data Series↗