Geology topics

James D. Fraser

Publications and source records attributed to James D. Fraser.

6 recordsLinked to original sources

USGS2019

Using a Bayesian network to understand the importance of coastal storms and undeveloped landscapes for the creation and maintenance of early successional habitat

Coastal storms have consequences for human lives and infrastructure but also create important early successional habitats for myriad species. For example, storm-induced overwash creates nesting habitat for shorebirds like piping plovers ( Charadrius melodus ). We examined how piping plover habitat extent and location changed on barrier islands in New York, New Jersey, and Virginia after Hurricane Sandy made landfall following the 2012 breeding season. We modeled nesting habitat using a nest presence/absence dataset that included characterizations of coastal morphology and vegetation. Using a Bayesian network, we predicted nesting habitat for each study site for the years 2010/2011, 2012, and 2014/2015 based on remotely sensed spatial datasets (e.g., lidar, orthophotos). We found that Hurricane Sandy increased piping plover habitat by 9 to 300% at 4 of 5 study sites but that one site saw a decrease in habitat by 27%. The amount, location, and longevity of new habitat appeared to be influenced by the level of human development at each site. At three of the five sites, the amount of habitat created and the time new habitat persisted were inversely related to the amount of development. Furthermore, the proportion of new habitat created in high-quality overwash was inversely related to the level of development on study areas, from 17% of all new habitat in overwash at one of the most densely developed sites to 80% of all new habitat at an undeveloped site. We also show that piping plovers exploited new habitat after the storm, with 14–57% of all nests located in newly created habitat in the 2013 breeding season. Our results quantify the importance of storms in creating and maintaining coastal habitats for beach-nesting species like piping plovers, and these results suggest a negative correlation between human development and beneficial ecological impacts of these natural disturbances.

New Jersey, New York, Virginia↗

USGS2017

Smartphone technologies and Bayesian networks to assess shorebird habitat selection

Understanding patterns of habitat selection across a species’ geographic distribution can be critical for adequately managing populations and planning for habitat loss and related threats. However, studies of habitat selection can be time consuming and expensive over broad spatial scales, and a lack of standardized monitoring targets or methods can impede the generalization of site-based studies. Our objective was to collaborate with natural resource managers to define available nesting habitat for piping plovers ( Charadrius melodus ) throughout their U.S. Atlantic coast distribution from Maine to North Carolina, with a goal of providing science that could inform habitat management in response to sea-level rise. We characterized a data collection and analysis approach as being effective if it provided low-cost collection of standardized habitat-selection data across the species’ breeding range within 1–2 nesting seasons and accurate nesting location predictions. In the method developed, >30 managers and conservation practitioners from government agencies and private organizations used a smartphone application, “iPlover,” to collect data on landcover characteristics at piping plover nest locations and random points on 83 beaches and barrier islands in 2014 and 2015. We analyzed these data with a Bayesian network that predicted the probability a specific combination of landcover variables would be associated with a nesting site. Although we focused on a shorebird, our approach can be modified for other taxa. Results showed that the Bayesian network performed well in predicting habitat availability and confirmed predicted habitat preferences across the Atlantic coast breeding range of the piping plover. We used the Bayesian network to map areas with a high probability of containing nesting habitat on the Rockaway Peninsula in New York, USA, as an example application. Our approach facilitated the collation of evidence-based information on habitat selection from many locations and sources, which can be used in management and decision-making applications.

U.S Atlantic Coast↗

USGS2016

Metapopulation viability of an endangered shorebird depends on dispersal and human-created habitats: Piping plovers ( Charadrius melodus ) and prairie rivers

Background Many species are distributed as metapopulations in dynamic landscapes, where habitats change through space and time. Individuals locate habitat through dispersal, and the relationship between a species and landscape characteristics can have profound effects on population persistence. Despite the importance of connectivity in dynamic environments, few empirical studies have examined temporal variability in dispersal or its effect on metapopulation dynamics. In response to this knowledge gap, we studied the dispersal, demography, and viability of a metapopulation of an endangered, disturbance-dependent shorebird. We examined three subpopulations of piping plovers ( Charadrius melodus ) on the lower Platte and Missouri rivers from 2008–2013. High flow events from an upstream dam on the Missouri River in 2010 and 2011 allowed us to assess the effect of total habitat loss and the subsequent creation of new habitat associated with a large disturbance at one ‘natural’ study location. The other two sites within the metapopulation, which were maintained by anthropogenic activities (e.g., mining, development, habitat restoration), were largely unaffected by this disturbance, resulting in a controlled natural experiment. Results High flow events were associated with increased emigration, decreased immigration, and decreased survival in the subpopulation that experienced high flows. Following the high flow event, immigration into that subpopulation increased. Dispersal rates among subpopulations were negatively correlated with distance. The metapopulation had a low probability of extinction over 100 years (0%) under the current disturbance interval and associated dispersal and survival rates. However, persistence depended on relatively stable, human-created habitats, not the dynamic, natural habitat (47.7 % extinction probability for this subpopulation). Conclusions We found that functional connectivity, as measured by the rate of dispersal among subpopulations, increased as a result of the high flow event in our study metapopulation. Plovers also increased reproductive output following this event. Although the study metapopulation had a low overall probability of extinction, metapopulation persistence depended on anthropogenically created habitats that provided a small but stable source of nesting habitat and dispersers through time. However, all subpopulations remained small, even if persistent, making them individually vulnerable to extinction through stochastic events. Given the highly dynamic nature of habitat availability in this system, maintaining several subpopulations within the metapopulation and stable sources of habitat will be critical, and this species will likely remain conservation-reliant.

Nebraska↗

USGS2014

A Bayesian network approach to predicting nest presence of thefederally-threatened piping plover ( Charadrius melodus ) using barrier island features

Sea-level rise and human development pose significant threats to shorebirds, particularly for species that utilize barrier island habitat. The piping plover (Charadrius melodus) is a federally-listed shorebird that nests on barrier islands and rapidly responds to changes in its physical environment, making it an excellent species with which to model how shorebird species may respond to habitat change related to sea-level rise and human development. The uncertainty and complexity in predicting sea-level rise, the responses of barrier island habitats to sea-level rise, and the responses of species to sea-level rise and human development necessitate a modelling approach that can link species to the physical habitat features that will be altered by changes in sea level and human development. We used a Bayesian network framework to develop a model that links piping plover nest presence to the physical features of their nesting habitat on a barrier island that is impacted by sea-level rise and human development, using three years of data (1999, 2002, and 2008) from Assateague Island National Seashore in Maryland. Our model performance results showed that we were able to successfully predict nest presence given a wide range of physical conditions within the model’s dataset. We found that model predictions were more successful when the range of physical conditions included in model development was varied rather than when those physical conditions were narrow. We also found that all model predictions had fewer false negatives (nests predicted to be absent when they were actually present in the dataset) than false positives (nests predicted to be present when they were actually absent in the dataset), indicating that our model correctly predicted nest presence better than nest absence. These results indicated that our approach of using a Bayesian network to link specific physical features to nest presence will be useful for modelling impacts of sea-level rise- or human-related habitat change on barrier islands. We recommend that potential users of this method utilize multiple years of data that represent a wide range of physical conditions in model development, because the model performed less well when constructed using a narrow range of physical conditions. Further, given that there will always be some uncertainty in predictions of future physical habitat conditions related to sea-level rise and/or human development, predictive models will perform best when developed using multiple, varied years of data input.

Maryl↗

USGS2005

Prenesting use of intertidal habitats by piping plovers on South Monomoy Island, Massachusetts

On barrier islands, piping plovers commonly select nest sites adjacent to bay-side intertidal flats, pools, or other moist substrates that are protected from ocean waves (Patterson et al. 1991, Elias et al. 2000, Keane 2002). During the fledging period, these areas often support more terrestrial arthropods than adjacent ocean beaches (Loegering and Fraser 1995, Elias et al. 2000). Plover chicks in these areas typically forage at higher rates, and they often have higher survival rates than chicks foraging exclusively on backshore and ocean intertidal areas (Loegering and Fraser 1995, Elias et al. 2000). In some places, however, piping plovers nest near protected moist substrates even though physical barriers prevent broods from reaching them (Patterson et al. 1991, Loegering and Fraser 1995, Keane 2002). This suggests that nesting near protected moist substrates is adaptive for adults even if their hatchlings cannot forage there until they fledge.

Massachusetts↗

USGS1984

Organochlorine pesticide, polychlorobiphenyl, and mercury residues in bald eagle eggs – 1969-79 – And their relationships to shell thinning and reproduction

Bald eagle ( Haliaeetus leucocephalus ) eggs were collected in 14 States in 1969–79 and analyzed for organochlorine pesticides, polychlorobiphenyls, and mercury. Moderate shell thinning occurred in eggs from several areas. Eggs from the Chesapeake Bay area contained the highest residue levels of most organochlorines. DDE was detected in all eggs; other organochlorines were detected less frequently. Mercury levels were highest in eggs from Maine. Eight contaminants were significantly negatively correlated with shell thickness or reproduction at sampled breeding areas; DDE was most closely related to these factors. Production of young was near normal at breeding areas when DDE was ⩽3 ppm (wet weight); reproductive failure approached 100% for those breeding areas where DDE in eggs was >15 ppm. Five ppm DDE was associated with 10% shell thinning. The other contaminants that were associated with these factors were also highly correlated with DDE; their impact appeared minor in relation to those of DDE.

Archives of Environmental Contamination and Toxico↗