Geology topics

J. Hardin Waddle

Publications and source records attributed to J. Hardin Waddle.

50 records · Page 3Linked to original sources

USGS2015

Reproductive biology of Ambystoma salamanders in the southeastern United States

Reproductive aspects of Ambystoma salamanders were investigated at sites in Louisiana (2010–12) and Mississippi (2013). Three species occurred at the Louisiana site, Spotted Salamander ( A. maculatum ), Marbled Salamander ( A. opacum ), and Mole Salamander ( A. talpoideum ), whereas only Spotted Salamanders were studied at the Mississippi site. A total of 162 and 71 egg masses of Spotted Salamanders were examined at the Louisiana and Mississippi sites, respectively. Significantly more Spotted Salamander eggs per egg mass were observed at the Mississippi site (x̄ = 78.2) than the Louisiana site (x̄ = 53.8; P < 0.001). The mean snout–vent length of female Spotted Salamanders at the Mississippi site (82.9 mm) was significantly larger than the Louisiana site (76.1 mm; P < 0.001). Opaque Spotted Salamander egg masses were not found at the Mississippi site, but accounted for 11% of examined egg masses at the Louisiana site. The mean number of eggs per egg mass at the Louisiana site did not differ between opaque (47.3) and clear (54.6) egg masses (P = 0.21). A total of 47 egg masses of the Mole Salamander were examined, with a mean number of 6.7 embryos per mass. Twenty-three individual nests of the Marbled Salamander were found either under or in decaying logs in the dry pond basins. There was no difference between the mean numbers of eggs per mass of attended nests (93.0) versus those that were discovered unattended (86.6; P = 0.67). Females tended to place their nests at intermediate heights within the pond basin.

Louisiana, Mississippi↗

USGS2015

Hyla chrysoscelis (Cope’s gray treefrog) x Hyla cinerea (green treefrog): putative natural hybrid

Naturally–occurring hybrid treefrogs have been occasionally found in the eastern United States. However, these hybrids are almost always between members of the same species group. On 10 Jun 2014, at 2145 h, we located an individual making an unusual advertisement call along Bayou Manual Road in Sherburne Wildlife Management Area in the Atchafalaya Basin of south-central Louisiana, USA, and brought it back to the laboratory for further study. Physically, the treefrog appeared intermediate between a Green Treefrog and a Cope’s Gray Treefrog, which are members of different species groups. Call analysis also showed the individual to be intermediate between the two putative parental species. Flow cytometry was used to estimate the total genome size from nuclei of whole blood cells, and also determined the individual to be intermediate of the putative parental species. Despite vocalizing for mates, the hybrid did not appear to have viable spermatozoa, and was likely the result of an anomalous mis-mating event between a male Cope’s Gray Treefrog and a female Green Treefrog. To our knowledge, natural hybrids between a Cope’s Gray Treefrog and a Green Treefrog have not been previously reported.

Louisiana↗

USGS2014

Anuran site occupancy and species richness as tools for evaluating restoration of a hydrologically-modified landscape

A fundamental goal of wetland restoration is to reinstate pre-disturbance hydrological conditions to degraded landscapes, facilitating recolonization by native species and the production of resilient, functional ecosystems. To evaluate restoration success, baseline conditions need to be determined and a reference target needs to be established that will serve as an ecological blueprint in the restoration process. During the summer wet seasons of 2010 and 2011, we used automated recording units to monitor a community of calling anuran amphibians in the Picayune Strand State Forest of Southwest Florida, USA. This area is undergoing hydrological restoration as part of the Comprehensive Everglades Restoration Plan. We compared occurrence of anurans at sites in the restoration area, to nearby locations in relatively undisturbed habitat (reference sites). We assessed the utility of the latter as restoration targets, using a hierarchical model of community species occupancy to estimate the probability of occurrence of anurans in restoration and reference locations. We detected 14 species, 13 of which were significantly more likely to occur in reference areas. All 14 species were estimated by our model to occur at these sites but, across both years, only 8–13 species were estimated to occur at restoration sites. The composition and structure of these habitats within and adjacent to the Picayune Strand State Forest indicate that they are suitable targets for habitat restoration, as measured by amphibian occurrence and species richness. These areas are important sources for recolonization of anuran amphibians as the hydrologically degraded Picayune Strand undergoes restoration to mitigate the effects of overdrainage and habitat loss.

Florida↗

USGS2014

A review of pipe and bamboo artificial refugia as sampling tools in anuran studies

Artificial pipe-like refugia have been used for more than 40 years in anuran studies, and have captured 28 species, primarily (82%) hylid treefrogs. Early pipe-like refugia were made using cut pieces of bamboo in the tropical forests of Puerto Rico, but most recent studies have used synthetic pipes and have occurred primarily in the southeastern United States. Characteristics of artificial refugia (e.g., color, length, and diameter), and their placement in the environment have varied greatly among studies, making comparisons difficult. Here, we summarize and evaluate different pipe designs and placement, address potential concerns when using artificial pipe-like refugia, and suggest studies necessary to better interpret the data gained from this technique in anuran studies.

Herpetological Conservation and Biology↗

USGS2013

Wetland Reserve Program enhances site occupancy and species richness in assemblages of anuran amphibians in the Mississippi Alluvial Valley, USA

We measured amphibian habitat use to quantify the effectiveness of conservation practices implemented under the Wetland Reserve Program (WRP), an initiative of the U.S. Department of Agriculture’s Natural Resources Conservation Service. From February to June 2007, we quantified calling male anurans in cultivated cropland, former cultivated cropland restored through the WRP, and mature bottomland hardwood forest. Sites were located in two watersheds within the Mississippi Alluvial Valley of Arkansas and Louisiana, USA. We estimated detection probability and site occupancy within each land use category using a Bayesian hierarchical model of community species occurrence, and derived an estimate of species richness at each site. Relative to sites in cultivated cropland, nine of 1 l species detected were significantly more likely to occur at WRP sites and six were more likely to occur at forested sites. Species richness estimates were also higher for WRP and forested sites, compared to those in cultivated cropland. Almost half (45 %) of the species responded positively to both WRP and forested sites, indicating that patches undergoing restoration may be important transitional habitats. Wetland Reserve Program conservation practices are successful in restoring suitable habitat and reducing the impact of cultivation-induced habitat loss on amphibians in the Mississippi Alluvial Valley.

Arkansas;Louisiana↗

USGS2013

Co-occurrence of invasive Cuban Treefrogs and native treefrogs in PVC pipe refugia

The Cuban Treefrog ( Osteopilus septentrionalis ) was first introduced to Florida at Key West. Since this introduction, Cuban Treefrogs have spread to Miami and are now established throughout most of peninsular Florida. Cuban Treefrogs can become very abundant in areas they colonize. Several reasons contribute to their success, including a generalist diet, high fecundity and the ability to reproduce year-round, and use of disturbed or human-modified habitats. Scientists and managers are concerned that Cuban Treefrogs may contribute to the decline of native treefrogs. Cuban Treefrogs may exclude native treefrogs through both competition and predation. Because the evidence from our study and others suggests that Green and Squirrel Treefrogs do not alter their behavior to avoid Cuban Treefrogs, there is cause for concern that sampling with PVC pipes may increase the vulnerability of the native species to predation. This possibility needs further research, including whether other species of native treefrogs sympatric to where Cuban Treefrogs have invaded are also naïve to the possible threat posed by these frogs, and also if native treefrogs eventually learn to avoid Cuban Treefrogs.

Florida↗

USGS2012

A quantitative assessment of the conservation benefits of the Wetlands Reserve Program to amphibians

The Mississippi Alluvial Valley (MAV) originally consisted of nearly contiguous bottomland hardwood (BLH) forest encompassing approximately 10 million hectares. Currently, only 20–25% of the historical BLH forests remain in small patches fragmented by agricultural lands. The Wetlands Reserve Program (WRP) was established to restore and protect the functions and values of wetlands in agricultural landscapes. To assess the potential benefit of WRP restoration to amphibians, we surveyed 30 randomly selected WRP sites and 20 nearby agricultural sites in the Mississippi Delta. We made repeat visits to each site from May to August 2008 and performed both visual encounter and vocalization surveys. We analyzed the encounter history data for 11 anuran species using a Bayesian hierarchical occupancy model that estimated detection probability and probability of occurrence simultaneously for each species. Nine of the 11 species had higher probabilities of occurrence at WRP sites compared to agriculture. Derived estimates of species richness were also higher for WRP sites. Five anuran species were significantly more likely to occur in WRP than in agriculture, four of which were among the most aquatic species. It appears that the restoration of a more permanent hydrology at the WRP sites may be the primary reason for this result. Although amphibians represent only one group of wildlife species, they are useful for evaluating restoration benefits for wildlife because of their intermediate trophic position. The methods used in this study to evaluate the benefit of restoration could be used in other locations and with other groups of indicator species.

Mississippi↗

USGS2011

Estimating occupancy dynamics in an anuran assemblage from Louisiana, USA

Effective monitoring programs are designed to track changes in the distribution, occurrence, and abundance of species. We developed an extension of Royle and Kéry's (2007) single species model to estimate simultaneously temporal changes in probabilities of detection, occupancy, colonization, extinction, and species turnover using data on calling anuran amphibians, collected from 2002 to 2006 in the Lower Mississippi Alluvial Valley of Louisiana, USA. During our 5-year study, estimates of occurrence probabilities declined for all 12 species detected. These declines occurred primarily in conjunction with variation in estimates of local extinction probabilities (cajun chorus frog [ Pseudacris fouquettei ], spring peeper [ P. crucifer ], northern cricket frog [ Acris crepitans ], Cope's gray treefrog [ Hyla chrysoscelis ], green treefrog [ H. cinerea ], squirrel treefrog [ H. squirella ], southern leopard frog [ Lithobates sphenocephalus ], bronze frog [ L. clamitans ], American bullfrog [ L. catesbeianus ], and Fowler's toad [ Anaxyrus fowleri ]). For 2 species (eastern narrowmouthed toad [ Gastrophryne carolinensis ] and Gulf Coast toad [ Incilius nebulifer ]), declines in occupancy appeared to be a consequence of both increased local extinction and decreased colonization events. The eastern narrow-mouthed toad experienced a 2.5-fold increase in estimates of occupancy in 2004, possibly because of the high amount of rainfall received during that year, along with a decrease in extinction and increase in colonization of new sites between 2003 and 2004. Our model can be incorporated into monitoring programs to estimate simultaneously the occupancy dynamics for multiple species that show similar responses to ecological conditions. It will likely be an important asset for those monitoring programs that employ the same methods to sample assemblages of ecologically similar species, including those that are rare. By combining information from multiple species to decrease the variance on estimates of individual species, our results are advantageous compared to single-species models. This feature enables managers and researchers to use an entire community, rather than just one species, as an ecological indicator in monitoring programs.

Louisiana↗

USGS2010

The aquatic turtle assemblage inhabiting a highly altered landscape in southeast Missouri

Turtles are linked to energetic food webs as both consumers of plants and animals and prey for many species. Turtle biomass in freshwater systems can be an order of magnitude greater than that of endotherms. Therefore, declines in freshwater turtle populations can change energy transfer in freshwater systems. Here we report on a mark–recapture study at a lake and adjacent borrow pit in a relict tract of bottomland hardwood forest in the Mississippi River floodplain in southeast Missouri, which was designed to gather baseline data, including sex ratio, size structure, and population size, density, and biomass, for the freshwater turtle population. Using a variety of capture methods, we captured seven species of freshwater turtles (snapping turtle Chelydra serpentina ; red-eared slider Trachemys scripta ; southern painted turtle Chrysemys dorsalis ; river cooter Pseudemys concinna ; false map turtle Graptemys pseudogeographica ; eastern musk turtle Sternotherus odoratus ; spiny softshell Apalone spinifera ) comprising four families (Chelydridae, Emydidae, Kinosternidae, Trinoychidae). With the exception of red-eared sliders, nearly all individuals captured were adults. Most turtles were captured by baited hoop-nets, and this was the only capture method that caught all seven species. The unbaited fyke net was very successful in the borrow pit, but only captured four of the seven species. Basking traps and deep-water crawfish nets had minimal success. Red-eared sliders had the greatest population estimate (2,675), density (205/ha), and biomass (178 kg/ha). Two species exhibited a sex-ratio bias: snapping turtles C. serpentina in favor of males, and spiny softshells A. spinifera in favor of females.

Missouri↗

USGS2010

A new parameterization for estimating co‐occurrence of interacting species

Models currently used to estimate patterns of species co‐occurrence while accounting for errors in detection of species can be difficult to fit when the effects of covariates on species occurrence probabilities are included. The source of the estimation problems is the particular parameterization used to specify species co‐occurrence probability. We develop a new parameterization for estimating patterns of co‐occurrence of interacting species that allows the effects of covariates to be specified quite naturally without estimation problems. In our model, the occurrence of one species is assumed to depend on the occurrence of another, but the occurrence of the second species is not assumed to depend on the presence of the first species. This pattern of co‐occurrence, wherein one species is dominant and the other is subordinate, can be produced by several types of ecological interactions (predator–prey, parasitism, and so on). A simulation study demonstrated that estimates of species occurrence probabilities were unbiased in samples of 50–100 locations and three surveys per location, provided species are easily detected (probability of detection ≥ 0.5). Higher sample sizes (>200 locations) are needed to achieve unbiasedness when species are more difficult to detect. An analysis of data from treefrog surveys in southern Florida indicated that the occurrence of Cuban treefrogs, an invasive predator species, was highest near the point of its introduction and declined with distance from that location. Sites occupied by Cuban treefrogs were 9.0 times less likely to contain green treefrogs and 15.7 times less likely to contain squirrel treefrogs compared to sites without Cuban treefrogs. The detection probabilities of native treefrog species did not depend on the presence of Cuban treefrogs, suggesting that the native treefrog species are naive to the introduced species.

Ecological Applications↗

USGS2009

Efficacy of automatic vocalization recognition software for anuran monitoring

Surveys of vocalizations are a widely used method for monitoring anurans, but it can be difficult to coordinate standardized data collection across a large geographic area. Digital automated recording systems (ARS) offer a low-cost method for obtaining samples of anuran vocalizations, but the number of recordings can easily overwhelm human listeners. We tested Song Scope, an automatic vocalization recognition software program for personal computers to determine if this type of machine learning approach is currently a viable solution for anuran monitoring. For three species, Song Scope scanned more than 200 h of recordings in 3-20 h at the settings we chose. The software misidentified true calls (false positive) at rates of 2.7%-15.8% per species and failed to detect calls (false negative) in 45%-51% of recordings. There exists a tradeoff between false positive and false negative errors, which can be adjusted by setting the minimum criteria for the recognition software. Users of this approach should carefully consider their reasons for monitoring and how they intend to use the data before creating a large monitoring network.

Louisiana↗

USGS2005

Herpetofaunal Inventories of the National Parks of South Florida and the Caribbean: Volume III. Big Cypress National Preserve

Amphibian declines and extinctions have been documented around the world, often in protected natural areas. Concern for this trend has prompted the U.S. Geological Survey and the National Park Service to document all species of amphibians that occur within U.S. National Parks and to search for any signs that amphibians may be declining. This study, an inventory of amphibian species in Big Cypress National Preserve, was conducted from 2002 to 2003. The goals of the project were to create a georeferenced inventory of amphibian species, use new analytical techniques to estimate proportion of sites occupied by each species, look for any signs of amphibian decline (missing species, disease, die-offs, and so forth.), and to establish a protocol that could be used for future monitoring efforts. Several sampling methods were used to accomplish these goals. Visual encounter surveys and anuran vocalization surveys were conducted in all habitats throughout the park to estimate the proportion of sites or proportion of area occupied (PAO) by each amphibian species in each habitat. Opportunistic collections, as well as limited drift fence data, were used to augment the visual encounter methods for highly aquatic or cryptic species. A total of 545 visits to 104 sites were conducted for standard sampling alone, and 2,358 individual amphibians and 374 reptiles were encountered. Data analysis was conducted in program PRESENCE to provide PAO estimates for each of the anuran species. All of the amphibian species historically found in Big Cypress National Preserve were detected during this project. At least one individual of each of the four salamander species was captured during sampling. Each of the anuran species in the preserve was adequately sampled using standard herpetological sampling methods, and PAO estimates were produced for each species of anuran by habitat. This information serves as an indicator of habitat associations of the species and relative abundance of sites occupied, but it will also be useful as a comparative baseline for future monitoring efforts. In addition to sampling for amphibians, all encounters with reptiles were documented. The sampling methods used for detecting amphibians are also appropriate for many reptile species. These reptile locations are included in this report, but the number of reptile observations was not sufficient to estimate PAO for reptile species. We encountered 35 of the 46 species of reptiles believed to be present in Big Cypress National Preserve during this study, and evidence exists of the presence of four other reptile species in the Preserve. This study found no evidence of amphibian decline in Big Cypress National Preserve. Although no evidence of decline was observed, several threats to amphibians were identified. Introduced species, especially the Cuban treefrog (Osteopilus septentrionalis), are predators and competitors with several native frog species. The recreational use of off-road vehicles has the potential to affect some amphibian populations, and a study on those potential impacts is currently underway. Also, interference by humans with the natural hydrologic cycle of south Florida has the potential to alter the amphibian community. Continued monitoring of the amphibian species in Big Cypress National Preserve is recommended. The methods used in this study were adequate to produce reliable estimates of the proportion of sites occupied by most anuran species, and are a cost-effective means of determining the status of their populations.

Open-File Report↗

USGS2005

Herpetofaunal Inventories of the National Parks of South Florida and the Caribbean: Volume II. Virgin Islands National Park

Amphibian declines and extinctions have been documented around the world, often in protected natural areas. Concern for this alarming trend has focused attention on the need to document all species of amphibians that occur within U.S. National Parks and to search for any signs that amphibians may be declining. This study, an inventory of amphibian species in Virgin Islands National Park, was conducted from 2001 to 2003. The goals of the project were to create a georeferenced inventory of amphibian species, use new analytical techniques to estimate proportion of sites occupied by each species, look for any signs of amphibian decline (missing species, disease, die-offs, etc.), and to establish a protocol that could be used for future monitoring efforts. Several sampling methods were used to accomplish these goals. Visual encounter surveys and anuran vocalization surveys were conducted in all habitats throughout the park to estimate the proportion of sites or proportion of area occupied (PAO) by amphibian species in each habitat. Line transect methods were used to estimate density of some amphibian species and double observer analysis was used to refine counts based on detection probabilities. Opportunistic collections were used to augment the visual encounter methods for rare species. Data were collected during four sampling periods and every major trail system throughout the park was surveyed. All of the amphibian species believed to occur on St. John were detected during these surveys. One species not previously reported, the Cuban treefrog (Osteopilus septentrionalis), was also added to the species list. That species and two others (Eleutherodactylus coqui and Eleutherodactylus lentus) bring the total number of introduced amphibians on St. John to three. We detected most of the reptile species thought to occur on St. John, but our methods were less suitable for reptiles compared to amphibians. No amphibian species appear to be in decline at this time. We found no evidence of disease or of malformations. Our surveys provide a snapshot picture of the status of the amphibian species, so continued monitoring would be necessary to determine long-term trends, but several potential threats to amphibians were identified. Invasive species, especially the Cuban treefrog, have the potential to decrease populations of native amphibians. Introduced mammalian predators are also a potential threat, especially to the reptiles of St. John, and mammalian grazers might have indirect effects on amphibians and reptiles through habitat modification. Finally, loss of habitat to development outside the park boundary could harm some important populations of amphibians and reptiles on the island.

Open-File Report↗

USGS2004

Herpetofaunal inventories of the National Parks of South Florida and the Caribbean: Volume I. Everglades National Park

Amphibian declines and extinctions have been documented around the world, often in protected natural areas. Concern for this alarming trend has prompted the U.S. Geological Survey and the National Park Service to document all species of amphibians that occur within U.S. National Parks and to search for any signs that amphibians may be declining. This study, an inventory of amphibian species in Everglades National Park, was conducted during 2000 to 2003. The goals of the project were to create a georeferenced inventory of amphibian species, use new analytical techniques to estimate proportion of sites occupied by each species, look for any signs of amphibian decline (missing species, disease, die-offs, etc.), and to establish a protocol that could be used for future monitoring efforts. Several sampling methods were used to accomplish all of these goals. Visual encounter surveys and anuran vocalization surveys were conducted in all habitats throughout the park to estimate the proportion of sites or proportion of area occupied (PAO) by each amphibian species in each habitat. Opportunistic collections, as well as some drift fence and aquatic funnel trap data were used to augment the visual encounter methods for highly aquatic or cryptic species. A total of 562 visits to 118 sites were conducted for standard sampling alone, and 1788 individual amphibians and 413 reptiles were encountered. Data analysis was done in program PRESENCE to provide PAO estimates for each of the anuran species. All but one of the amphibian species thought to occur in Everglades National Park was detected during this project. That species, the Everglades dwarf siren (Pseudobranchus axanthus belli), is especially cryptic and probably geographically limited in its range in Everglades National Park. The other three species of salamanders and all of the anurans in the park were sampled adequately using standard herpetological sampling methods. PAO estimates were produced for each species of anuran by habitat. This information is valuable now as an indicator of habitat associations of the species and relative abundance of sites occupied, but it will also be useful as a comparative baseline for future monitoring efforts. In addition to sampling for amphibians, all encounters with reptiles were documented. The sampling methods used for detecting amphibians are also appropriate for many reptile species. These reptile locations are included in this report, but there were not enough locations for most reptile species to analyze the PAO of individual species. 37 of the 57 species of reptiles thought to occur in Everglades National Park were detected during this study. This study found no evidence of amphibian decline in Everglades National Park. There was one species not detected, but there is no evidence to indicate it has been extirpated from the park. Although no declines were observed, several threats to amphibians were identified. Introduced species, especially the Cuban treefrog (Osteopilus septentrionalis), are predators and competitors with several native frog species. Also, interference by humans with the natural hydrological cycle of the Everglades has the potential to alter the amphibian community. Finally, habitat loss outside the park has the potential to leave the amphibians in Everglades National Park isolated from other populations. Continued monitoring of the amphibian species in Everglades National Park is recommended. The methods used in this study are adequate to produce reliable estimates of the proportion of sites occupied by most anuran species. Continuing this protocol is a cost-effective way of determining whether species are decreasing or increasing in abundance of sites occupied.

Open-File Report↗