Geology topics

H.L. Jelks

Publications and source records attributed to H.L. Jelks.

8 recordsLinked to original sources

USGS2012

Abiotic and biotic controls of cryptobenthic fish assemblages across a Caribbean seascape

The majority of fish studies on coral reefs consider only non-cryptic species and, despite their functional importance, data on cryptic species are scarce. This study investigates inter-habitat variation in Caribbean cryptobenthic fishes by re-analysing a comprehensive data set from 58 rotenone stations around Buck Island, U.S. Virgin Islands. Boosted regression trees were used to associate the density and diversity of non-piscivorous cryptobenthic fishes, both in the entire data set and on reef habitats alone, with 14 abiotic and biotic variables. The study also models the habitat requirements of the three commonest species. Dead coral cover was the first or second most important variable in six of the eight models constructed. For example, within the entire data set, the number of species and total fish density increased approximately linearly with increasing dead coral cover. Dead coral was also important in multivariate analyses that discriminated 10 assemblages within the entire data set. On reef habitats, the number of species and total fish density increased dramatically when dead coral exceeded ~55 %. Live coral cover was typically less important for explaining variance in fish assemblages than dead coral, but live corals were important for maintaining high fish diversity. Coral species favoured by cryptobenthic species may be particularly susceptible to mortality, but dead coral may also provide abundant food and shelter for many fishes. Piscivore density was a key variable in the final models, but typically increased with increasing cryptobenthic fish diversity and abundance, suggesting both groups of fishes are responding to the same habitat variables. The density of territorial damselfishes reduced the number of cryptobenthic fish species on reef habitats. Finally, habitats delineated by standard remote sensing techniques supported distinct cryptobenthic fish assemblages, suggesting that such maps can be used as surrogates of general patterns of cryptic fish biodiversity in conservation planning.

Coral Reefs↗

USGS2008

Modeling unobserved sources of heterogeneity in animal abundance using a Dirichlet process prior

In surveys of natural populations of animals, a sampling protocol is often spatially replicated to collect a representative sample of the population. In these surveys, differences in abundance of animals among sample locations may induce spatial heterogeneity in the counts associated with a particular sampling protocol. For some species, the sources of heterogeneity in abundance may be unknown or unmeasurable, leading one to specify the variation in abundance among sample locations stochastically. However, choosing a parametric model for the distribution of unmeasured heterogeneity is potentially subject to error and can have profound effects on predictions of abundance at unsampled locations. In this article, we develop an alternative approach wherein a Dirichlet process prior is assumed for the distribution of latent abundances. This approach allows for uncertainty in model specification and for natural clustering in the distribution of abundances in a data-adaptive way. We apply this approach in an analysis of counts based on removal samples of an endangered fish species, the Okaloosa darter. Results of our data analysis and simulation studies suggest that our implementation of the Dirichlet process prior has several attractive features not shared by conventional, fully parametric alternatives. ?? 2008, The International Biometric Society.

Biometrics↗

USGS2008

Conservation status of imperiled north American freshwater and diadromous fishes

This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society's Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management.

Fisheries↗

USGS2007

Molecular systematics of Serrasalmidae: Deciphering the identities of piranha species and unraveling their evolutionary histories

Piranhas and their relatives have proven to be a challenging group from a systematic perspective, with difficulties in identification of species, linking of juveniles to adults, diagnosis of genera, and recognition of higher-level clades. In this study we add new molecular data consisting of three mitochondrial regions for museum vouchered and photo-documented representatives of the Serrasalmidae. These are combined with existing serrasalmid sequences in GenBank to address species and higher-level questions within the piranhas using parsimony and Bayesian methods. We found robust support for the monophyly of Serrasalmus manueli , but not for Serrasalmus gouldingi when GenBank specimens identified as S. gouldingi were included in the analysis. " Serrasalmus gouldingi " sequences in GenBank may, however, be misidentified. Linking of juveniles to adults of the same species was greatly facilitated by the addition of sequence data. Based on our sampling and identifications, our data robustly reject the monophyly of the genera Serrasalmus and Pristobrycon . We found evidence for a well-supported clade comprised of Serrasalmus , Pygocentrus , and Pristobrycon (in part). This clade was robustly supported in separate and combined analyses of gene regions, and was also supported by a unique molecular character, the loss of a tandem repeat in the control region. Analysis of specimens and a literature review suggest this clade is also characterized by the presence of a pre-anal spine and ectopterygoid teeth. A persistent polytomy at the base of this clade was dated using an independent calibration as 1.8 million years old, corresponding to the beginning of the Pleistocene Epoch, and suggesting an origin for this clade more recent than dates cited in the recent literature. The sister group to this clade is also robustly supported, and consists of Catoprion , Pygopristis , and Pristobrycon striolatus . If the term piranha is to refer to a monophyletic clade, it should be restricted to Serrasalmus , Pygocentrus , and Pristobrycon (in part), or expanded to include these taxa plus Pygopristis , Catoprion , and Pristobrycon striolatus .

Zootaxa↗

USGS2005

Improving removal-based estimates of abundance by sampling a population of spatially distinct subpopulations

A statistical modeling framework is described for estimating the abundances of spatially distinct subpopulations of animals surveyed using removal sampling. To illustrate this framework, hierarchical models are developed using the Poisson and negative-binomial distributions to model variation in abundance among subpopulations and using the beta distribution to model variation in capture probabilities. These models are fitted to the removal counts observed in a survey of a federally endangered fish species. The resulting estimates of abundance have similar or better precision than those computed using the conventional approach of analyzing the removal counts of each subpopulation separately. Extension of the hierarchical models to include spatial covariates of abundance is straightforward and may be used to identify important features of an animal's habitat or to predict the abundance of animals at unsampled locations.

Biometrics↗

USGS2005

Black Carp: Biological synopsis and risk assessment of an introduced fish

This book is a detailed risk assessment and biological synopsis of the black carp, a large mollusk-eating cyprinid fish native to eastern Asia. A great deal of controversy surrounds the presence of this foreign fish in the United States. Most of those associated with the aquaculture industry view black carp as an important tool in controlling. Major subjects addressed are (1) taxonomy, description, and distinguishing characteristics of the species; (2) native distribution; (3) biology and natural history, with emphasis on diet and reproduction; (4) history of the species in world aquaculture; (5) history of introduction within and outside the United States; (6) use as a biological control control agent, including a review of digenetic trematodes and snail-borne parasites of special concern and methods used for control; (7) alternatives to the use of black carp; (8) environmental tolerance and potential geographic range; and (9) risks associated with its introduction. The book also includes substantial information on the other Chinese carp species, including bighead carp, silver carp, and grass carp.

Special Publication↗

USGS2002

The gulf surgeon, Acanthurus randalli, a junior synonym of the ocean surgeon, Acanthurus bahianus (teleostei: Acanthuridae)

We compared 62 specimens, 48-126.5 mm standard length, of Acanthurus bahianus from the northeastern Gulf of Mexico with 95 specimens from other localities to determine if the distinguishing characters in the original description of the Gulf of Mexico endemic surgeonfish Acanthurus randalli were valid. No color pattern or meristic differences were found, and the only measurement that allowed distinction (91% percent concordance) was the shallower caudal concavity of northeastern Gulf of Mexico specimens. Acanthurus chirurgus from the northeastern Gulf of Mexico also have shallower caudal concavities (93.7% percent concordance) than do conspecifics from other areas, suggesting that this trend may be correlated with some unknown environmental influence. Considering the extended planktonic larval dispersal capabilities of Atlantic surgeonfishes, and that the single divergent morphological character state is also exhibited in a sympatric northeastern Gulf of Mexico population of A. chirurgus , recognition of A. randalli is untenable, and the name is considered a junior synonym of A. bahianus . An identification key to western Atlantic species of Acanthurus that incorporates the results of this study is given.

Gulf of Mexico↗

USGS2001

Effects of suspended sediment on the reproductive success of the tricolor shiner, a crevice-spawning minnow

Excessive sedimentation of rivers and creeks has been linked to increasing levels of imperilment in the diverse fish fauna of the southeastern United States. In particular, benthic-spawning fishes have decreased in both numbers and range. The tricolor shiner Cyprinella trichroistia is a crevice-spawning minnow that is widespread in the eastern Mobile River drainage above the Fall Line. While they are less sensitive to perturbation than the federally threatened blue shiner C. caerulea, tricolor shiners have decreased in numbers and range during the past few decades. This experiment examined the effects of 0 (control), 100, 300, and 600 mg/L initial concentrations of suspended sediment on the reproductive success of the tricolor shiner. Increasing levels of suspended sediment caused decreasing levels of reproductive success (fewer spawns and fewer eggs laid when spawning occurred). Increasing levels of suspended sediment also delayed the onset of spawning, resulting in distinct frequency distributions of clear eggs, eyed eggs, and larvae across treatments. Mortality of eggs and larvae was not a factor in the experiment. We examined daily sediment concentration data recorded at three sites in the upper Coosa River over the April-August spawning season of 1963. By weighting our experimental results by the number of days above each sediment concentration, we estimated that 20% fewer eggs were laid than would have been laid if conditions had been like those of the controls. Albeit our model is simplistic, it provides insight into how excessive sedimentation contributes to population extirpation. Mitigation of suspended sediments is an important management action for the conservation of southern Appalachian fishes that spawn in benthic habitats.

Transactions of the American Fisheries Society↗