Geology topics

Gary Whelan

Publications and source records attributed to Gary Whelan.

8 recordsLinked to original sources

USGS2025

The National Fish Habitat Partnership – A unique path to conserving fish habitat

The National Fish Habitat Partnership (NFHP) is a science based, non-regulatory, partnership-driven effort to conserve fish habitat across the USA. The NFHP was developed in the early to mid-2000s in response to the noted declines to fish populations and their associated habitats across the USA with the effort led by the Association of Fish and Wildlife Agencies and supported by a wide range of federal and state fisheries agencies along with conservation organizations. Since 2006, 20 Fish Habitat Partnerships have been organized around specific habitats, fish species, or geographic areas. These partnerships have implemented 1,613 projects resulting in 9,720 habitat enhancements or parcels of habitat protected, including 7,962 riverine or coastline miles and 98,255 acres of marine, lake, impoundment, and reservoir fish habitat along with 1,499 science and data products using US$60,613,842 of direct NFHP investment matched or leveraged by $332,841,072. The NFHP was codified by the U.S. Congress in 2020 and reauthorized in 2024, building on the strong initial foundation and ensuring success into the future. Follow-up publications to this overview paper are planned by each Fish Habitat Partnership to fully describe the depth and breadth of this key U.S. habitat program.

Fisheries↗

USGS2022

The North American Freshwater Migratory Fish Database (NAFMFD): Characterizing the migratory life histories of freshwater fishes of Canada, the United States and Mexico

Aim Migratory freshwater fishes are those that must access discrete habitats to complete their life cycles. Freshwater fish migrations occur around the world and provide numerous ecosystem services for humans and natural systems; however, many migratory species are in decline globally. A limiting factor to successfully conserve freshwater migratory fishes is that the migratory life histories of many species are unknown or only partially described. To provide researchers with critical and comprehensive information to conserve migratory fishes, we developed the North American Freshwater Migratory Fish Database (NAFMFD). Location Canada, Mexico and the United States. Taxon Freshwater fish. Methods To develop this database, we assigned migratory status, pattern and behaviour to a comprehensive list of freshwater fish species found throughout North America. We assembled the database which included assignments (i.e. migratory status, pattern and behaviour) as well as the sources used to make the assignments. Researchers and managers from across North America reviewed the database for completeness and accuracy on the migratory life histories of fishes. Results The database synthesizes current knowledge of migratory status, pattern and behaviour of native and non-native freshwater fishes throughout North America, including 1250 species representing 79 families and 325 genera. Results showcase the diversity of migratory life histories of freshwater fishes on the continent, including that at least 25% of North American freshwater fishes are migratory, 23% are non-migratory and 44% have undetermined migratory status. Main conclusions NAFMFD improves the quality of migratory data accessible to researchers, which supports a more holistic understanding of the threats encountered by migratory fishes, including habitat fragmentation. The approach we used in developing NAFMFD can provide guidance for developing similar databases in other regions. Collectively, our work offers new insights into the range of freshwater fish migratory life histories, stimulating a need to better understand this diversity globally.

Journal of Biogeography↗

USGS2021

Coalescent methods reconstruct contributions of natural colonization and stocking to origins of Michigan inland Cisco (Coregonus artedi)

Fish population structure in previously glaciated regions is often influenced by natural colonization processes and human-mediated dispersal, including fish stocking. Endemic populations are of conservation interest because they may contain rare and unique genetic variation. While coregonines are native to certain Michigan inland lakes, some were stocked with fish from Great Lakes sources, calling into question the origin of extant populations. While most stocking targeted lake whitefish ( Coregonus clupeaformis ), cisco ( C. artedi ) were also stocked from the Great Lakes to inland waterbodies. We used population genetic data (microsatellite genotypes and mitochondrial (mt)DNA sequences), coalescent modeling, and approximate Bayesian computation to investigate the origins of 12 inland Michigan cisco populations. The spatial distribution of mtDNA haplotypes suggests Michigan is an introgression zone for two ancestral cisco lineages associated with separate glacial refugia. Low levels of genetic diversity and high levels of genetic divergence were observed for populations located well inland of the Great Lakes relative to populations occupying waterbodies near the Great Lakes. Estimates of recent Great Lakes gene flow ranged from 27 to 48% for populations near the Great Lakes shoreline but were substantially lower (under 8%) for populations further inland. Inland lakes with elevated recent gene flow estimates may have been recipients of stocked coregonine fry, including cisco. Low levels of genetic diversity paired with a high likelihood of endemism as indicated by strong genetic divergence and low Great Lakes population inputs suggest the analyzed cisco populations occupying southern Michigan kettle lakes are of elevated conservation interest.

Michigan↗

USGS2021

Loop-mediated isothermal amplification (LAMP) assay for detection of Asian fish tapeworm, Schyzocotyle acheilognathi (Yamaguti, 1934) [syn. Bothriocephalus acheilognathi]

The Asian fish tapeworm ( Schyzocotyle acheilognathi syn. Bothriocephalus acheilognathi ) (AFT) is an invasive parasite that can infect many species of fish, although most hosts are primarily members of Cyprinidae. Pathogenicity has most often been reported in aquaculture settings in fry and fingerling stages of carp ( Cyprinus spp.). More recently, it has been shown to cause growth retardation in the endangered bonytail chub ( Gila elegans ) and found to be widespread in populations of endangered humpback chub ( Gila cypha ) in the Colorado River, Grand Canyon, Arizona. AFT spreads most often through the transport of infected fish, particularly baitfish. Despite its harmful potential, there is no efficient or accurate ante mortem test to detect AFT in water or fish samples before transport. Herein, we report on the development of a sensitive and specific loop-mediated isothermal amplification (LAMP) assay to detect the parasite in under 30 min from laboratory prepared samples. Six LAMP primers were designed to amplify a variable region of the 18S ribosomal RNA gene in AFT with the detection and quantification of DNA on a real-time fluorometer. The limit of detection was 1 × 10 1 copies/µl of DNA extracted from as few as 2 AFT eggs. Future application of our assay would be a low-cost test to rapidly and accurately detect AFT DNA from environmental samples on-site so that preventive actions can be taken to halt the spread of the AFT through the movement of infected fish.

Journal of Parasitology↗

USGS2018

The flathead catfish invasion of the Great Lakes

A detailed review of historical literature and museum data revealed that flathead catfish were not historically native in the Great Lakes Basin , with the possible exception of a relict population in Lake Erie. The species has invaded Lake Erie, Lake St. Clair, Lake Huron, nearly all drainages in Michigan, and the Fox/Wolf and Milwaukee drainages in Wisconsin. They have not been collected from Lake Superior yet, and the temperature suitability of that lake is questionable. Flathead catfish have been stocked sparingly in the Great Lakes and is not the mechanism responsible for their spread. A stocking in 1968 in Ohio may be one exception to this. Dispersal resulted from both natural range expansions and unauthorized introductions. The invasion is ongoing, with the species invading both from the east and the west to meet in northern Lake Michigan. Much of this invasion has likely taken place since the 1990s. This species has been documented to have significant impacts on native fishes in other areas where it has been introduced; therefore, educating the public not to release them into new waters is important. Frequent monitoring of rivers and lakes for the presence of this species would detect new populations early so that management actions could be utilized on new populations if desired.

Great Lakes↗

USGS2016

Applications of genetic data to improve management and conservation of river fishes and their habitats

Environmental variation and landscape features affect ecological processes in fluvial systems; however, assessing effects at management-relevant temporal and spatial scales is challenging. Genetic data can be used with landscape models and traditional ecological assessment data to identify biodiversity hotspots, predict ecosystem responses to anthropogenic effects, and detect impairments to underlying processes. We show that by combining taxonomic, demographic, and genetic data of species in complex riverscapes, managers can better understand the spatial and temporal scales over which environmental processes and disturbance influence biodiversity. We describe how population genetic models using empirical or simulated genetic data quantify effects of environmental processes affecting species diversity and distribution. Our summary shows that aquatic assessment initiatives that use standardized data sets to direct management actions can benefit from integration of genetic data to improve the predictability of disturbance–response relationships of river fishes and their habitats over a broad range of spatial and temporal scales.

Fisheries↗

USGS2016

Through a fish's eye: The status of fish habitats in the United States 2015

This report updates and revises the 2010 “ Status of Fish Habitats in the United States” that summarized initial results of a comprehensive national assessment of aquatic habitats at an unprecedented scale and level of detail. This 2015 report provides even greater detail and improves our knowledge of the condition of fish habitat in the United States. The 2010 inland streams assessment characterized fish habitat condition using stream fish data from more than 26,000 stream reaches, while the 2015 assessment was based on fish data from more than 39,000 stream reaches nationally. To increase accuracy, the 2015 inland stream assessment incorporated 12 additional human disturbance variables into the fish analysis when compared to the 2010 assessment. Associations between all human disturbance variables summarized in both catchments as well as stream buffers were tested against stream fish metrics to develop assessment scores. Additional variables incorporated into the 2015 assessment and their summary within catchments and buffers allowed for more explicit characterization of the diverse set of disturbances to stream fish habitats occurring across the Nation than what occurred in 2010, and this was made possible due in part to advances in available GIS layers. With the incorporation of these additional disturbances, managers and decision makers can use assessment results to more explicitly identify limits to stream fish habitats. Even with the additional disturbances incorporated into 2015 assessment, results may overestimate fish habitat condition, as localized and regionally-specific disturbances are still not available in some cases.

Report↗

USGS2014

Importance of understanding landscape biases in USGS gage locations: Implications and solutions for managers

Flow and water temperature are fundamental properties of stream ecosystems upon which many freshwater resource management decisions are based. U.S. Geological Survey (USGS) gages are the most important source of streamflow and water temperature data available nationwide, but the degree to which gages represent landscape attributes of the larger population of streams has not been thoroughly evaluated. We identified substantial biases for seven landscape attributes in one or more regions across the conterminous United States. Streams with small watersheds (<10 km 2 ) and at high elevations were often underrepresented, and biases were greater for water temperature gages and in arid regions. Biases can fundamentally alter management decisions and at a minimum this potential for error must be acknowledged accurately and transparently. We highlight three strategies that seek to reduce bias or limit errors arising from bias and illustrate how one strategy, supplementing USGS data, can greatly reduce bias.

Fisheries↗