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F. Jordan

Publications and source records attributed to F. Jordan.

10 recordsLinked to original sources
USGS2009

Deficit irrigation of a landscape halophyte for reuse of saline waste water in a desert city

Saline waste waters from industrial and water treatment processes are an under-utilized resource in desert urban environments. Management practices to safely use these water sources are still in development. We used a deeprooted native halophyte, Atriplex lentiformis (quailbush), to absorb mildly saline effluent (1800 mg l-1 total dissolved solids, mainly sodium sulfate) from a water treatment plant in the desert community of Twentynine Palms, California. We developed a deficit irrigation strategy to avoid discharging water past the root zone to the aquifer. The plants were irrigated at about one-third the rate of reference evapotranspiration (ETo) calculated from meteorological data over five years and soil moisture levels were monitored to a soil depth of 4.7 m at monthly intervals with a neutron hydroprobe. The deficit irrigation schedule maintained the soil below field capacity throughout the study. Water was presented on a more or less constant schedule, so that the application rates were less than ETo in summer and equal to or slightly greater than ETo in winter, but the plants were able to consume water stored in the profile in winter to support summer ET. Sodium salts gradually increased in the soil profile over the study but sulfate levels remained low, due to formation of gypsum in the calcic soil. The high salt tolerance, deep roots, and drought tolerance of desert halophytes such as A. lentiformis lend these plants to use as deficit-irrigated landscape plants for disposal of effluents in urban setting when protection of the aquifer is important. ?? 2008 Elsevier B.V.

Landscape and Urban Planning↗
USGS2008

Modeling unobserved sources of heterogeneity in animal abundance using a Dirichlet process prior

In surveys of natural populations of animals, a sampling protocol is often spatially replicated to collect a representative sample of the population. In these surveys, differences in abundance of animals among sample locations may induce spatial heterogeneity in the counts associated with a particular sampling protocol. For some species, the sources of heterogeneity in abundance may be unknown or unmeasurable, leading one to specify the variation in abundance among sample locations stochastically. However, choosing a parametric model for the distribution of unmeasured heterogeneity is potentially subject to error and can have profound effects on predictions of abundance at unsampled locations. In this article, we develop an alternative approach wherein a Dirichlet process prior is assumed for the distribution of latent abundances. This approach allows for uncertainty in model specification and for natural clustering in the distribution of abundances in a data-adaptive way. We apply this approach in an analysis of counts based on removal samples of an endangered fish species, the Okaloosa darter. Results of our data analysis and simulation studies suggest that our implementation of the Dirichlet process prior has several attractive features not shared by conventional, fully parametric alternatives. ?? 2008, The International Biometric Society.

Biometrics↗
USGS2008

Wide-area estimates of stand structure and water use of tamarix spp. on the lower colorado river: Implications for restoration and water management projects

Tamarix spp. removal has been proposed to salvage water and allow native vegetation to recolonize western U.S. riparian corridors. We conducted wide-area studies on the Lower Colorado River to answer some of the scientific questions about Tamarix water use and the consequences of removal, combining ground surveys with remote sensing methods. Tamarix stands had moderate rates of evapotranspiration (ET), based on remote sensing estimates, averaging 1.1 m/yr, similar to rates determined for other locations on the river and other rivers. Leaf area index values were also moderate, and stands were relatively open, with areas of bare soil interspersed within stands. At three Tamarix sites in the Cibola National Wildlife Refuge, groundwater salinity at the site nearest to the river (200 m) was relatively low (circa 2,250 mg/L) and was within 3 m of the surface. However, 750 and 1,500 m from the river, the groundwater salinity was 5,000-10,000 mg/L due to removal of water by the Tamarix stands. Despite the high groundwater salinity, the sites away from the river did not have saline surface soils. Only 1% of the mean annual river flow is lost to Tamarix ET on the Lower Colorado River in the United States, and the opportunities for water salvage through Tamarix removal are constrained by its modest ET rates. A possible alternative to Tamarix removal is to intersperse native plants among the stands to improve the habitat value of the riparian zone. ?? 2008 Society for Ecological Restoration International.

Restoration Ecology↗
USGS2008

Effects of fin clipping on survival and position-holding behavior of brown darters, Etheostoma edwini

Advent of the polymerase chain reaction (PCR) has allowed conservation biologists to use small portions of tissue to obtain genetic material for population genetic and taxonomic study. Fin clips are used extensively in large-sized fishes, but it is unclear how clipping enough fin tissue for genetic analysis will affect survival of smaller fishes such as minnows and darters, which are among the most threatened organisms in North America. We tested for effects of fin clipping on survival and swimming performance of non-threatened Brown Darters (Etheostoma edwini) in order to justify similar tissue collection in co-occurring endangered Okaloosa Darters (E. okaloosae). We collected 48 E. edwini from a small stream in northwest Florida, transported them to the laboratory, and randomly assigned them to one of three experimental groups: control, entire right pectoral fin removed, or rear half of caudal fin removed. Successful amplification of DNA indicated that our fin clips were large enough for genetic analysis using PCR. No mortality occurred during a two-month observation period. Fin regeneration was almost complete and we could not visually distinguish clipped fins from control fins after two months. We then randomly assigned fish into the same three experimental groups, clipped fins, and evaluated their ability to hold position at 20 cm/sec in an experimental flow chamber. Neither fish size nor treatment type affected position-holding behavior. Fin clipping does not adversely affect survival and swimming performance of E. edwini maintained in the laboratory. Additional research on the effects of fin clipping on small-sized fishes should be conducted in the field to evaluate survival under natural conditions. ?? 2008 by the American Society of Ichthyologists and Herpetologists.

Copeia↗
USGS2007

Comparison of visual survey and seining methods for estimating abundance of an endangered, benthic stream fish

We compared visual survey and seining methods for estimating abundance of endangered Okaloosa darters, Etheostoma okaloosae, in 12 replicate stream reaches during August 2001. For each 20-m stream reach, two divers systematically located and marked the position of darters and then a second crew of three to five people came through with a small-mesh seine and exhaustively sampled the same area. Visual surveys required little extra time to complete. Visual counts (24.2 ?? 12.0; mean ?? one SD) considerably exceeded seine captures (7.4 ?? 4.8), and counts from the two methods were uncorrelated. Visual surveys, but not seines, detected the presence of Okaloosa darters at one site with low population densities. In 2003, we performed a depletion removal study in 10 replicate stream reaches to assess the accuracy of the visual survey method. Visual surveys detected 59% of Okaloosa darters present, and visual counts and removal estimates were positively correlated. Taken together, our comparisons indicate that visual surveys more accurately and precisely estimate abundance of Okaloosa darters than seining and more reliably detect presence at low population densities. We recommend evaluation of visual survey methods when designing programs to monitor abundance of benthic fishes in clear streams, especially for threatened and endangered species that may be sensitive to handling and habitat disturbance. ?? 2007 Springer Science+Business Media, Inc.

Environmental Biology of Fishes↗
USGS2006

Seasonal variation in habitat use by marsh fishes

We used I-m 2 throw traps to examine habitat use by smallsized fishes within a mosaic of wet prairies and sloughs in the headwaters of the St. Johns River, Florida between August 1992 and November 1995. Estimates of total fish density and biomass varied temporally, but did not differ significantly between habitats. Patterns of habitat use, however, differed among the five numerically dominant species. Bluefin killifish, mosquitofish, and golden topminnows were more abundant in sloughs than in wet prairies. In contrast, Everglades pygmy sunfish were more abundant in wet prairies than in sloughs. Finally, the abundance of least killifish did not differ between habitats. Fish densities were positively correlated with plant biomass (i. e., habitat complexity) and negatively correlated with water depth (i. e., hydrology). Species richness and composition were similar among habitats. However, consistent differences in the relative abundance of numerically dominant species between habitats indicated some degree of habitat-specific assemblage structure. Most species were concentrated into deeper sloughs during drying events. This assemblage of small-sized fishes appears to respond relatively rapidly to changes in habitat structure and hydrologic conditions. We therefore recommend that resource managers consider using fishes as indicator taxa to evaluate the efficacy of ongoing restoration and management efforts in wetland systems.

Florida↗
USGS2005

Improving removal-based estimates of abundance by sampling a population of spatially distinct subpopulations

A statistical modeling framework is described for estimating the abundances of spatially distinct subpopulations of animals surveyed using removal sampling. To illustrate this framework, hierarchical models are developed using the Poisson and negative-binomial distributions to model variation in abundance among subpopulations and using the beta distribution to model variation in capture probabilities. These models are fitted to the removal counts observed in a survey of a federally endangered fish species. The resulting estimates of abundance have similar or better precision than those computed using the conventional approach of analyzing the removal counts of each subpopulation separately. Extension of the hierarchical models to include spatial covariates of abundance is straightforward and may be used to identify important features of an animal's habitat or to predict the abundance of animals at unsampled locations.

Biometrics↗
USGS2005

Population dynamics of wetland fishes: Spatio-temporal patterns synchronized by hydrological disturbance?

1. Drought is a natural disturbance that can cause widespread mortality of aquatic organisms in wetlands. We hypothesized that seasonal drying of marsh surfaces (i.e. hydrological disturbance) shapes spatio-temporal patterns of fish populations. 2. We tested whether population dynamics of fishes were synchronized by hydrological disturbance (Moran effect) or distance separating study sites (dispersal). Spatio-temporal patterns were examined in local populations of five abundant species at 17 sites (sampled five times per year from 1996 to 2001) in a large oligotrophic wetland. 3. Fish densities differed significantly across spatio-temporal scales for all species. For all species except eastern mosquitofish (Gambusia holbrooki), a significant portion of spatio-temporal variation in density was attributed to drying events (used as a covariate). 4. We observed three patterns of response to hydrological disturbance. Densities of bluefin killifish (Lucania goodei), least killifish (Heterandria formosa), and golden top-minnow (Fundulus chrysotus) were usually lowest after a dry down and recovered slowly. Eastern mosquitofish showed no distinct response to marsh drying (i.e. they recovered quickly). Flagfish (Jordanella floridae) density was often highest after a dry down and then declined. Population growth after a dry down was often asymptotic for bluefin killifish and golden topminnow, with greatest asymptotic density and longest time to recovery at sites that dried infrequently. 5. Fish population dynamics were synchronized by hydrological disturbance (independent of distance) and distance separating study sites (independent of hydrological disturbance). Our ability to separate the relative importance of the Moran effect from dispersal was strengthened by a weak association between hydrological synchrony and distance among study sites. Dispersal was the primary mechanism for synchronous population dynamics of flagfish, whereas hydrological disturbance was the primary mechanism for synchronous population dynamics of the other species examined. 6. Species varied in the relative role of the Moran effect and dispersal in homogenizing their population dynamics, probably as a function of life history and ability to exploit dry-season refugia. ?? 2005 British Ecological Society.

Journal of Animal Ecology↗
USGS2000

Empirical assessment of fish introductions in a subtropical wetland: An evaluation of contrasting views

We summarized data from eight quantitative fish surveys conducted in southern Florida to evaluate the distribution and relative abundance of introduced fishes across a variety of habitats. These surveys encompassed marsh and canal habitats throughout most of the Everglades region, including the mangrove fringe of Florida Bay. Two studies provided systematically collected density information over a 20-year period, and documented the first local appearance of four introduced fishes based on their repeated absence in prior surveys. Those species displayed a pattern of rapid population growth followed by decline, then persistence at lower densities. Estuarine areas in the southern Everglades, characterized by natural tidal creeks surrounded by mangrove-dominated marshes, and canals held the largest introduced-fish populations. Introduced fishes were also common, at times exceeding 50% of the fish community, in solution holes that serve as dry-season refuges in short-hydroperiod rockland habitats of the eastern Everglades. Wet prairies and alligator ponds distant from canals generally held few individuals of introduced fishes. These patterns suggest that the introduced fishes in southern Florida at present may not be well-adapted to persist in freshwater marshes of the Everglades, possibly because of an interaction of periodic cold-temperature stress and hydrologic fluctuation. Our analyses indicated low densities of these fishes in central or northern Everglades wet-prairie communities, and, in the absence of experimental data, little evidence of biotic effects in this spatially extensive habitat. There is no guarantee that this condition will be maintained, especially under the cumulative effects of future invasions or environmental change.

Biological Invasions↗