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Duane Chapman

Publications and source records attributed to Duane Chapman.

At least 73 records · Page 4Linked to original sources
USGS2015

A reply to Iversen et al.'s comment “Monitoring of animal abundance by environmental DNA - An increasingly obscure perspective”

We appreciate the conversation put forward by Iversen et al. (2015) in their response to our article “Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix ” in the 2015 environmental DNA special issue of Biological Conservation. We agree with Iversen et al.'s concern about overly optimistic conclusions that could be drawn from the current eDNA literature. One hope for eDNA technology is that it can be used in estimating abundance or population density. Evidence suggests that eDNA measurements correlate with total biomass (Takahara et al., 2012) rather than abundance. We demonstrate a similar relationship between biomass and eDNA shedding rates. Nevertheless, without field testing of these methods and specific survey protocols, we cannot make strong conclusions regarding the technique's field applicability. In our manuscript, we attempted to point out areas in which more research is needed.

Biological Conservation↗
USGS2015

Suitability of Lake Erie for bigheaded carps based on bioenergetic models and remote sensing

Algal blooms in the Great Lakes are a potential food source for silver carp ( Hypophthalmichthys molitrix ) and bighead carp ( H. nobilis ; together bigheaded carps). Understanding these blooms thus plays an important role in understanding the invasion potential of bigheaded carps. We used remote sensing imagery, temperatures, and improved species specific bioenergetics models to determine algal concentrations sufficient for adult bigheaded carps. Depending on water temperature we found that bigheaded carp require between 2 and 7 μg/L chlorophyll or between 0.3 and 1.26 × 10 5 cells/mL Microcystis to maintain body weight. Algal concentrations in the western basin and shoreline were found to be commonly several times greater than the concentrations required for weight maintenance. The remote sensing images show that area of sufficient algal foods commonly encompassed several hundred square kilometers to several thousands of square kilometers when blooms form. From 2002 to 2011, mean algal concentrations increased 273%–411%. This indicates Lake Erie provides increasingly adequate planktonic algal food for bigheaded carps. The water temperatures and algal concentrations detected in Lake Erie from 2008 to 2012 support positive growth rates such that a 4 kg silver carp could gain between 19 and 57% of its body weight in a year. A 5 kg bighead carp modeled at the same water temperatures could gain 20–81% of their body weight in the same period. The remote sensing imagery and bioenergetic models suggest that bigheaded carps would not be food limited if they invaded Lake Erie.

Lake Erie, Lake St. Clair↗
USGS2015

Environmental DNA calibration study interim technical review report December 2014

The Environmental DNA Calibration Study (ECALS) is a multi-year study to improve the understanding and interpretation of the detection of Asian carp DNA in environmental samples (eDNA) used in early detection monitoring. eDNA surveillance programs seek to detect the presence of genetic material (DNA in cells sloughed off in slime, feces, urine, etc.) extracted from water samples; the detection of genetic material is linked to the possible presence of Asian carp. The study involves collaboration between the U.S. Army Corps of Engineers, the U.S. Geological Survey, and the U.S. Fish and Wildlife Service. ECALS addresses three major Action Items from the Asian Carp Regional Coordinating Committee (ACRCC) Asian Carp Control Strategy Framework, of which results to date are presented below. Initial ECALS efforts focused on eDNA vectors whereas marker development and calibration experiments received greater attention in 2013.

Report↗
USGS2014

Environmental DNA calibration study. Interim technical review report

Invasive aquatic nuisance species pose a major threat to aquatic ecosystems worldwide. Invasive Asian carps, including bighead carp (Hypophthalmichthys nobilis) and silver carp (H. molitrix) have been steadily dispersing upstream through the Mississippi, Illinois, and Des Plaines Rivers since the 1990s. To prevent further movement up the Illinois River into the Chicago Area Waterway System (CAWS, see Figures 1.1.1 to 1.1.3) and possibly Lake Michigan and the Great Lakes ecosystem, an electrical barrier has been operating near Lockport to deter the advance of Asian carp. Although one adult individual has been detected in Lockport pool of the Illinois Waterway, the leading edge of the invasion of bighead and silver carp is considered to be at RM 281.5 in Dresden Island Pool, 15 miles downstream from the barrier and 55 miles from Lake Michigan, and that front has not progressed upstream since 2006. Although spawning activity has been observed in Marseilles pool in 2012, verified capture of eggs and larvae remain downstream in Peoria pool, over 140 miles from Lake Michigan (Figure 1.1.1). Should a sustainable Asian carp population become established in the Great Lakes, native fish populations, as well as many threatened or endangered plant/animal species populations, could be impacted. In response to this threat, the Asian Carp Regional Control Committee (ACRCC) was formed in part to coordinate efforts to understand and organize against the Asian carp threat. The Asian Carp Control Strategy Framework (2012a) outlined major tasks to be completed for a better understanding of factors related to the advance of Asian carp populations towards the Great Lakes. In addition, the ACRCC formed the Monitoring and Rapid Response Workgroup to address Asian carp monitoring and removal (ACRCC 2012b).

Midwest waterways↗
USGS2013

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

Gut microbiota of invasive Asian silver carp (SVCP) and indigenous planktivorous gizzard shad (GZSD) in Mississippi river basin were compared using 16S rRNA gene pyrosequencing. Analysis of more than 440 000 quality-filtered sequences obtained from the foregut and hindgut of GZSD and SVCP revealed high microbial diversity in these samples. GZSD hindgut (GZSD_H) samples (n=23) with >7000 operational taxonomy units (OTUs) exhibited the highest alpha-diversity indices followed by SVCP foregut (n=15), GZSD foregut (n=9) and SVCP hindgut (SVCP_H) (n=24). UniFrac distance-based non-metric multidimensional scaling (NMDS) analysis showed that the microbiota of GZSD_H and SVCP_H were clearly separated into two clusters: samples in the GZSD cluster were observed to vary by sampling location and samples in the SVCP cluster by sampling date. NMDS further revealed distinct microbial community between foregut to hindgut for individual GZSD and SVCP. Cyanobacteria, Proteobacteria, Actinobacteria and Bacteroidetes were detected as the predominant phyla regardless of fish or gut type. The high abundance of Cyanobacteria observed was possibly supported by their role as the fish’s major food source. Furthermore, unique and shared OTUs and OTUs in each gut type were identified, three OTUs from the order Bacteroidales, the genus Bacillariophyta and the genus Clostridium were found significantly more abundant in GZSD_H (14.9–22.8%) than in SVCP_H (0.13–4.1%) samples. These differences were presumably caused by the differences in the type of food sources including bacteria ingested, the gut morphology and digestion, and the physiological behavior between GZSD and SVCP.

International Society for Microbial Ecology↗
USGS2013

Aspects of embryonic and larval development in bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix

As bighead carp Hypophthalmichthys nobilis and silver carp H. molitrix (the bigheaded carps) are poised to enter the Laurentian Great Lakes and potentially damage the region’s economically important fishery, information on developmental rates and behaviors of carps is critical to assessing their ability to establish sustainable populations within the Great Lakes basin. In laboratory experiments, the embryonic and larval developmental rates, size, and behaviors of bigheaded carp were tracked at two temperature treatments, one “cold” and one “warm”. Developmental rates were computed using previously described stages of development and the cumulative thermal unit method. Both species have similar thermal requirements, with a minimum developmental temperature for embryonic stages of 12.1° C for silver carp and 12.9° C for bighead carp, and 13.3° C for silver carp larval stages and 13.4° C for bighead carp larval stages. Egg size differed among species and temperature treatments, as egg size was larger in bighead carp, and “warm" temperature treatments. The larvae started robust upwards vertical swimming immediately after hatching, interspersed with intervals of sinking. Vertical swimming tubes were used to measure water column distribution, and ascent and descent rates of vertically swimming fish. Water column distribution and ascent and descent rates changed with ontogeny. Water column distribution also showed some diel periodicity. Developmental rates, size, and behaviors contribute to the drift distance needed to fulfill the early life history requirements of bigheaded carps and can be used in conjunction with transport information to assess invasibility of a river.

PLoS ONE↗
USGS2013

First evidence of grass carp recruitment in the Great Lakes Basin

We use aging techniques, ploidy analysis, and otolith microchemistry to assess whether four grass carp Ctenopharyngodon idella captured from the Sandusky River, Ohio were the result of natural reproduction within the Lake Erie Basin. All four fish were of age 1 +. Multiple lines of evidence indicate that these fish were not aquaculture-reared and that they were most likely the result of successful reproduction in the Sandusky River. First, at least two of the fish were diploid; diploid grass carp cannot legally be released in the Great Lakes Basin. Second, strontium:calcium (Sr:Ca) ratios were elevated in all four grass carp from the Sandusky River, with elevated Sr:Ca ratios throughout the otolith transect, compared to grass carp from Missouri and Arkansas ponds. This reflects the high Sr:Ca ratio of the Sandusky River, and indicates that these fish lived in a high-strontium environment throughout their entire lives. Third, Sandusky River fish were higher in Sr:Ca ratio variability than fish from ponds, reflecting the high but spatially and temporally variable strontium concentrations of southwestern Lake Erie tributaries, and not the stable environment of pond aquaculture. Fourth, Sr:Ca ratios in the grass carp from the Sandusky River were lower in their 2011 growth increment (a high water year) than the 2012 growth increment (a low water year), reflecting the observed inverse relationship between discharge and strontium concentration in these rivers. We conclude that these four grass carp captured from the Sandusky River are most likely the result of natural reproduction within the Lake Erie Basin.

Ohio↗
USGS2013

ECALS: Loading studies interim report July 2013

Since the initial detection of Asian carp moving up the Mississippi Basin, the potential for invasion of the Great Lakes by Silver Carp and Bighead Carp has been a major concern to stakeholders. To combat this problem, sampling for environmental DNA (eDNA) is used to monitor the waterways near Lake Michigan. This monitoring area includes the Chicago Area Waterways System (CAWS) and the Des Plaines River. By sampling waters that may be inhabited by Asian carp, the extraction and amplification of carp DNA from the collected cellular debris is possible. This technique has been successfully used in several other contexts (Ficetola et al., 2008; Foote et al., 2008) and is believed to be a highly sensitive method for species detection (Dejean et al., 2012). Compared to traditional methods for surveying aquatic invasive species (fishing, rotenone application, and electrofishing), the increased sensitivity of this method could be a valuable asset. Early detection could lead to a more rapid response to the threat of a Great Lakes invasion by Asian carp.

Report↗
USGS2013

ECALS: Loading studies interim report October 2013

Here we follow up the loading studies interim report from July 2013 and include results from laboratory studies assessing the effects of diet on eDNA shedding rates by bigheaded carps(silver and bighead carp). In order to understand how eDNA behavesin the environment, we must understand how it enters the system. In our July interim report, we addressed three of our four hypotheses that could influence the shedding rate of eDNA by these fish (Table 1; hypotheses A, B and D). We now provide results from studies that tested the fourth hypothesis (C), cellular debris from the gut-lining shed via excrementis a major source of shed eDNA.

Report↗
USGS2012

Location and timing of Asian carp spawning in the Lower Missouri River

We sampled for eggs of Asian carps, (bighead carp Hypophthalmichthys nobilis, silver carp H. molitrix , and grass carp Ctenopharyngodon idella ) in 12 sites on the Lower Missouri River and in six tributaries from the months of May through July 2005 and May through June 2006 to examine the spatial and temporal dynamics of spawning activity. We categorized eggs into thirty developmental stages, but usually they could not be identified to species. We estimated spawning times and locations based on developmental stage, temperature dependent rate of development and water velocity. Spawning rate was higher in the daytime between 05:00 and 21:00 h than at night. Spawning was not limited to a few sites, as has been reported for the Yangtze River, where these fishes are native, but more eggs were spawned in areas of high sinuosity. We employ a sediment transport model to estimate vertical egg concentration profiles and total egg fluxes during spawning periods on the Missouri River. We did not identify substantial spawning activity within tributaries or at tributary confluences examined in this study.

Missouri River↗
USGS2012

Microsatellite genetic diversity and differentiation of native and introduced grass carp populations in three continents

Grass carp ( Ctenopharyngodon idella ), a freshwater species native to China, has been introduced to about 100 countries/regions and poses both biological and environmental challenges to the receiving ecosystems. In this study, we analyzed genetic variation in grass carp from three introduced river systems (Mississippi River Basin in US, Danube River in Hungary, and Tone River in Japan) as well as its native ranges (Yangtze, Pearl, and Amur Rivers) in China using 21 novel microsatellite loci. The allelic richness, observed heterozygosity, and within-population gene diversity were found to be lower in the introduced populations than in the native populations, presumably due to the small founder population size of the former. Significant genetic differentiation was found between all pairwise populations from different rivers. Both principal component analysis and Bayesian clustering analysis revealed obvious genetic distinction between the native and introduced populations. Interestingly, genetic bottlenecks were detected in the Hungarian and Japanese grass carp populations, but not in the North American population, suggesting that the Mississippi River Basin grass carp has experienced rapid population expansion with potential genetic diversification during the half-century since its introduction. Consequently, the combined forces of the founder effect, introduction history, and rapid population expansion help explaining the observed patterns of genetic diversity within and among both native and introduced populations of the grass carp.

Genetica↗
USGS2012

Thermal and hydrologic suitability of Lake Erie and its major tributaries for spawning of Asian carps

Bighead carp Hypophthalmichthys nobilis , silver carp H. molitrix , and grass carp Ctenopharyngodon idella (hereafter Asian carps) have expanded throughout the Mississippi River basin and threaten to invade Lakes Michigan and Erie. Adult bighead carp and grass carp have been captured in Lake Erie, but self-sustaining populations probably do not exist. We examined thermal conditions within Lake Erie to determine if Asian carps would mature, and to estimate time of year when fish would reach spawning condition. We also examined whether thermal and hydrologic conditions in the largest tributaries to western and central Lake Erie were suitable for spawning of Asian carps. We used length of undammed river, predicted summer temperatures, and predicted water velocity during flood events to determine whether sufficient lengths of river are available for spawning of Asian carps. Most rivers we examined have at least 100 km of passable river and summer temperatures suitable (> 21 C) for rapid incubation of eggs of Asian carps. Predicted water velocity and temperature were sufficient to ensure that incubating eggs, which drift in the water column, would hatch before reaching Lake Erie for most flood events in most rivers if spawned far enough upstream. The Maumee, Sandusky, and Grand Rivers were predicted to be the most likely to support spawning of Asian carps. The Black, Huron, Portage, and Vermilion Rivers were predicted to be less suitable. The weight of the evidence suggests that the largest western and central Lake Erie tributaries are thermally and hydrologically suitable to support spawning of Asian carps.

Lake Erie↗
USGS2012

Binational ecological risk assessment of bigheaded carps (Hypophthalmichthys spp.) for the Great Lakes Basin.

Bigheaded carps (Bighead and Silver carps) are considered a potential threat to the Great Lakes basin. A binational ecological risk assessment was conducted to provide scientifically defensible advice for managers and decision-makers in Canada and the United States. This risk assessment looked at the likelihood of arrival, survival, establishment, and spread of bigheaded carps to obtain an overall probability of introduction. Arrival routes assessed were physical connections and human-mediated releases. The risk assessment ranked physical connections (specifically the Chicago Area Waterway System) as the most likely route for arrival into the Great Lakes basin. Results of the risk assessment show that there is enough food and habitat for bigheaded carp survival in the Great Lakes, especially in Lake Erie and productive embayments in the other lakes. Analyses of tributaries around the Canadian Great Lakes and the American waters of Lake Erie indicate that there are many suitable tributaries for bigheaded carp spawning. Should bigheaded carps establish in the Great Lakes, their spread would not likely be limited and several ecological consequences can be expected to occur. These consequences include competition for planktonic food leading to reduced growth rates, recruitment and abundance of planktivores. Subsequently this would lead to reduced stocks of piscivores and abundance of fishes with pelagic, early life stages. Overall risk is highest for lakes Michigan, Huron, and Erie, followed by Lake Ontario then Lake Superior. To avoid the trajectory of the invasion process and prevent or minimize anticipated consequences, it is important to continue to focus efforts on reducing the probability of introduction of these species at either the arrival, survival, establishment, or spread stage (depending on location).

Great Lakes Basin↗
USGS2011

Effect of water hardness and dissolved-solid concentration on hatching success and egg size in bighead carp

Bighead carp Hypophthalmichthys nobilis is an Asian species that has been introduced to the United States and is regarded as a highly undesirable invader. Soft water has been said to cause the bursting of Asian carp eggs and thus has been suggested as a factor that would limit the spread of this species. To evaluate this, we subjected fertilized eggs of bighead carp to waters with a wide range of hardness and dissolved-solid concentrations. Hatching rate and egg size were not significantly affected by the different water qualities. These results, combined with the low hardness (28–84 mg/L) of the Yangtze River (the primary natal habitat of Hypophthalmichthys spp.), suggest that managers and those performing risk assessments for the establishment of Hypophthalmichthys spp. should be cautious about treating low hardness and dissolved-solid concentrations as limiting factors.

Transactions of the American Fisheries Society↗
USGS2011

Genetic diversity and variation of mitochondrial DNA in native and introduced bighead carp

The bighead carp Hypophthalmichthys nobilis is native to China but has been introduced to over 70 countries and is established in many large river systems. Genetic diversity and variation in introduced bighead carp have not previously been evaluated, and a systematic comparison among fish from different river systems was unavailable. In this study, 190 bighead carp specimens were sampled from five river systems in three countries (Yangtze, Pearl, and Amur rivers, China; Danube River, Hungary; Mississippi River basin, USA) and their mitochondrial 16S ribosomal RNA gene and D-loop region were sequenced (around 1,345 base pairs). Moderate genetic diversity was found in bighead carp, ranging from 0.0014 to 0.0043 for nucleotide diversity and from 0.6879 to 0.9333 for haplotype diversity. Haplotype analysis provided evidence that (1) multiple haplotype groups might be present among bighead carp, (2) bighead carp probably originated from the Yangtze River, and (3) bighead carp in the Mississippi River basin may have some genetic ancestry in the Danube River. The analysis of molecular variance showed significant genetic differentiation among these five populations but also revealed limited differentiation between the Yangtze and Amur River bighead carp. This large-scale study of bighead carp genetic diversity and variation provides the first global perspective of bighead carp in the context of biodiversity conservation as well as invasive species control and management.

Transactions of the American Fisheries Society↗
USGS2011

Developmental rate and behavior of early life stages of bighead carp and silver carp

The early life stages of Asian carp are well described by Yi and others (1988), but since these descriptions are represented by line drawings based only on live individuals and lacked temperature controls, further information on developmental time and stages is of use to expand understanding of early life stages of these species. Bighead carp and silver carp were cultured under two different temperature treatments to the one-chamber gas bladder stage, and a photographic guide is provided for bighead carp and silver carp embryonic and larval development, including notes about egg morphology and larval swimming behavior. Preliminary information on developmental time and hourly thermal units for each stage is also provided. Both carp species developed faster under warmer conditions. Developmental stages and behaviors are generally consistent with earlier works with the exception that strong vertical swimming immediately after hatching was documented in this report.

Scientific Investigations Report↗