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David Smith

Publications and source records attributed to David Smith.

At least 19 recordsLinked to original sources
USGS2026

Applying a metapopulation model to compare native and invasive fish passage scenarios in the Upper Mississippi River

The U.S. Geological Survey assessed the ability of metapopulation models to evaluate population-level effects of fish passage projects in the Upper Mississippi River for six native species: Ictalurus furcatus (Valenciennes in Cuvier and Valenciennes, 1840; blue catfish), Ictiobus cyprinellus (Valenciennes in Cuvier and Valenciennes, 1844; bigmouth buffalo), Acipenser fulvescens (Rafinesque, 1817; lake sturgeon), Polyodon spathula (Walbaum, 1792; American paddlefish [paddlefish]), Ictiobus bubalus (Rafinesque, 1818; smallmouth buffalo), Scaphirhynchus platorynchus (Rafinesque, 1818; shovelnose sturgeon), and one invasive species: Hypophthalmichthys molitrix (Valenciennes in Cuvier and Valenciennes, 1844; silver carp). The study had four objectives: to (1) compile parameter values and identify gaps, (2) parameterize species-specific models, (3) apply the models to multiple scenarios, and (4) develop a point-and-click interface. The literature review revealed a paucity of data, for all species except silver carp and paddlefish; however, length–weight relations, female length–maturity curves, growth curves, spawning and recruitment estimates, and movement data among pools were identified. These data allowed the parameterization of native species metapopulation models, in addition to the use of an existing silver carp model. The models were applied to scenarios representing increased passage, decreased passage, combined passage and deterrents effects, and increased native passage with decreased invasive passage. Increased passage scenarios (depicting potential passage projects) produced greater movement and larger upriver populations. Decreased passage scenarios (depicting potential deterrent projects) yielded reduced movement. Similar population dynamic patterns were observed across species for each scenario because of a lack of species-specific empirical movement data. Simulations for longer lived, slow growing species required longer response times, including time to reach equilibria. A point-and-click model was created to allow others to use the model. Data availability for movement limited the ability of the model to be used to understand fish-movement biology and thereby inform management strategies. More fish-movement data could improve model projections of these scenarios.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗
USGS2024

Evaluation of a carbon dioxide fish barrier through numerical modelling

The Chicago Area Waterway System (CAWS) is a potential route for the migration of aquatic invasive species from the Mississippi River Basin into the Great Lakes. Electric dispersal barriers were installed in the Chicago Sanitary Ship Canal, within CAWS, to prevent invasive fish from reaching the Great Lakes. Despite the high efficiency of these barriers, occasional maintenance events create a vulnerability that fish can exploit to access the Great Lakes. This study aimed to assess the feasibility of a carbon dioxide (CO 2 ) infusion system to deter fish during the maintenance of the electric barriers. An algebraic slip mixture model was implemented in the OpenFOAM solver to represent the underwater CO 2 bubble plume and predict the concentration of dissolved CO 2 in the canal. Simulations under three canal flowrates and two sparger systems were conducted assuming a constant gas flowrate. Numerical results indicate that, for all simulated conditions, the CO 2 concentration is not fully mixed creating passageways that invasive fish could potentially use to migrate upstream. Injecting 4-mm bubbles induces two large-scale recirculations that are expected to synergistically improve fish avoidance. On the other hand, injection of 20 μ "> μ m bubbles results on almost immediate dissolution with minimal effect on the flow pattern. To improve effectiveness, a gas pulse system was proposed and numerically evaluated. Based on the simulations, this system not only extends the operation of the CO 2 barrier but also increases efficiency creating CO 2 gradients that can promote a more responsive behaviour from fish. Moreover, the pulse concept mitigates potential effect of elevated CO 2 downstream from the treated area.

Illinois↗
USGS2023

Application of the technology readiness levels framework to natural resource management tools

Technology advancements in fisheries science can provide useful tools to support natural resource management and conservation. However, new technologies may also present challenges for decision makers due to the lack of a standardized process to assess technologies for consideration within management plans. Future technology development in fishery and water resources could benefit from a framework that assigns an appropriate technology development stage and defines the readiness for implementation. Technology Readiness Levels (TRL) are one established research and development scale used throughout engineering and related disciplines that could be applied to natural resource management tools. The TRL assess the maturity of a technology from nascent idea through a fully developed technology. Steps within this scale could provide a general framework for researchers to follow when planning and conducting studies, while similarly providing a standard scale for resource managers to assess readiness for technology transfer and implementation. The goal of this paper is to describe TRL in the context of natural resource management tools and offer this existing framework as one option to facilitate communication between researchers and managers.

Fisheries↗
USGS2023

Movement and behavioral states of common carp (Cyprinus carpio) in response to a behavioral deterrent in a navigational lock

Freshwater ecosystems are some of the most affected by biological invasions due, in part, to the introduction of invasive carp worldwide. Where carp have become established, management programs often seek to limit further range expansion into new areas by reducing their movement through interconnected rivers and waterways. Lock and dams are important locations for non-physical deterrents, such as carbon dioxide (CO 2 ), to reduce unwanted fish passage without disrupting human use. The purpose of this study was to evaluate the behavioral responses of common carp ( Cyprinus carpio ) to non-physical deterrents within a navigation structure on the Fox River, Wisconsin. Acoustic telemetry combined with hidden Markov models (HMMs) was used to analyze variation in carp responses to treatments. Outcomes may inform CO 2 effectiveness at preventing invasive carp movement through movement pinch-points.

Wisconsin↗
USGS2023

Incorporating temperature into seepage loss estimates for a large unlined irrigation canal

Quantifying seepage losses from unlined irrigation canals is necessary to improve water use and conservation. The use of heat as a tracer is widely used in quantifying seepage rates across the sediment–water interface. In this study, field observations and two-dimensional numerical models were used to simulate seepage losses during the 2018 and 2019 irrigation season in the Truckee Canal system. Nineteen transects were instrumented with temperature probes and stage recording devices for inverse modeling to derive seepage flux and volumetric losses over the 39 km length of canal. The numerical models for each transect were calibrated and validated using the two-year dataset. Soil zones and observation data were used in each numerical model to help guide calibration of vertical and lateral heat and fluid fluxes. Model simulations were used to derive multivariable regression equations that consider stage, temperature, and hydraulic gradient. The results demonstrate the value of long-term datasets that illustrate the seasonality of groundwater levels, siltation, stage, and temperature on seepage rates. Seepage rates estimated by the numerical models range from 0.16 to 4.6 m 3 /d m −1 . Total annual volumetric losses estimated for 2018 and 2019 were 1.6 × 10 -2 to 1.2 × 10 -2 km 3 , respectively. The seepage losses estimated by this study account for 32 % to 41 % of the inflow volumes. Regression models were able to reproduce seepage time-series simulated by the numerical models reasonably well. In arid environments, water diverted into irrigation canals may be influenced by seasonal variations in temperature sufficient to influence the water accounting of conveyed surface flows.

Nevada↗
USGS2022

Performance of a carbon dioxide injection system at a navigation lock to control the spread of aquatic invasive species

Natural resource agencies need effective strategies to control the spread of aquatic invasive species (AIS) such as invasive fish, which can expand their range using rivers as hydrological pathways to access new areas. Lock and dam structures within major rivers are prospective locations to deploy techniques, such as carbon dioxide ( CO 2 ) infusion into lock water, that could impede upstream AIS migration without disrupting vessel passage and lock operation. The current pesticide label for CO 2 in the United States allows injections of 100–150 mg/LCO 2 as a behavioral deterrent treatment for invasive carps. This research describes the first operationalizing and testing of a CO 2 injection and manifold distribution system at a 1,548,000-L navigation lock chamber on the Fox River near Kaukauna, Wisconsin, USA. Two chemical distribution manifolds located on the floor and wall of the chamber were independently tested to quantify mixing time, mixing homogeneity, injection efficiency, and operational power requirements under a range of operating parameters. Both manifold configurations were able to meet most performance benchmarks established during previous fish behavior studies. Certain limitations were exhibited and quantified for both manifold configurations in terms of mixing homogeneity and operational power. This research details the design and performance of CO2-to-water infusion systems that could be used to deter the spread of AIS at navigation pinch-points. These results may inform future CO 2 system designs and operating conditions to support natural resource management plans to limit the spread of AIS.

Wisconsin↗
USGS2021

Surface infiltration and unsaturated zone characterization in support of managed aquifer recharge in Bedell Flat, Washoe County, Nevada

Aquifer storage and recovery (ASR) expands the portfolio of public water supply and improves resiliency to drought and future water demand. This study investigated the feasibility of ASR in the Bedell Flat Hydrographic Area using land-based methods including in-channel managed aquifer recharge (MAR) and rapid infiltration basins (RIB). Bedell Flat, one of two flow-through groundwater basins near Reno, Nevada, was a likely candidate for ASR because of its deep basin fill, proximity to supplemental water sources and infrastructure, and lack of development. In-channel MAR feasibility was determined from seepage losses along the Bird Springs ephemeral channel measured using Parshall flumes and heat-as-a-tracer inverse modeling. The feasibility of RIB was evaluated by characterizing vadose zone boreholes installed with roto-sonic drilling to water table. Field characterization of sediment and lithologic descriptions was accomplished at 1-foot (ft) increments. Bulk sediment samples were collected every 5 ft and cores from a split spoon were sampled at 10, 20, 30, 40, 60 and 100 ft below land surface (bls). Collected samples were analyzed for texture, moisture content, and geochemistry. Infiltration rates in Bird Springs channel increased downgradient with the hydraulic conductivity of the upper reaches ranging from 0.002 to 0.14 meter per hour (m/h) and the lower reaches from 0.5 to 1.5 m/h. Differences in discharge measurements indicate that seepage losses also increase down channel. When normalized to 1 ft of channel stage, modeled seepage loss rates ranged from 0.02 to 5.34 cubic feet per second (ft 3 /s) per mile (mi). Perched zones of soil moisture residing on top of dry fine-textured, clay-rich layers were prevalent in the Bird Springs drainage, indicating complicated flow paths for any supplement recharge water. Characterization of boreholes in Bird Springs drainage indicates low permeability clay layers 1–10 ft thick interbedded within extensive, grussy sands of high permeability. The presence of low permeability clay layers (1–10 ft thick) prompted a shift in analysis to the adjacent Sand Hills drainage where four additional boreholes indicated fewer perched water zones and at greater depths. Nitrates in the sediment pore-water (a condition that would discourage ASR) were integrated with depth to the aquifer 180 ft bls. Wells BF-MW-04 (Bird Springs) and BF-MW-07 (Sand Hills) contained 4,270 and 2,436 kilograms per hectare of nitrogen, respectively, which could potentially load excessive nitrogen to a receiving aquifer. An economically viable ASR project requires a minimum input of 2 million gallons per day (approximately 3 ft 3 /s), which either channel appears to have the sufficient capacity to infiltrate such a volume before reaching the valley bottom of Bedell Flat. However, the trajectory of the infiltrated water is complicated by the lithology and lateral transmissivity of the underlying sediments. There is also concern that this volume of infiltrated water may cause undesirable groundwater levels at the outflow in less than 5 years.

Nevada↗
USGS2021

The contribution of land cover change to the decline of honey yields in the Northern Great Plains

Decreased availability of forage, as well as increased pesticide exposure, are important factors in the decline of honey bee health. Here, we isolate land cover transitions and their effect on honey production at 160 commercial apiaries in the Northern Great Plains. We found that land cover changes from 2008 to 2012 caused an annual decline in honey yields of 0.9% in the study area. Transitions from grassland to soybean (but not corn) were particularly detrimental to honey yields, potentially due to bee contact with pesticides within and around agricultural fields. When our results are applied to known apiary locations across all of North Dakota (U.S.A.), we estimate a 2.5% (1.6 million USD) decline in 2012 honey yields due to land cover changes occurring between 2008 and 2012. Even when controlling for changes in land cover, we found that on average colonies in the study area experienced a 14% annual decline in honey yields. We discuss possible explanations for these non-land-cover-related honey yield declines, including changing economic conditions (e.g. pollination services), changes in land management (e.g. pesticides), and increases in pests or diseases.

South Dakota↗
USGS2021

The contribution of water radiolysis to marine sedimentary life

Water radiolysis continuously produces H 2 and oxidized chemicals in wet sediment and rock. Radiolytic H 2 has been identified as the primary electron donor (food) for microorganisms in continental aquifers kilometers below Earth’s surface. Radiolytic products may also be significant for sustaining life in subseafloor sediment and subsurface environments of other planets. However, the extent to which most subsurface ecosystems rely on radiolytic products has been poorly constrained, due to incomplete understanding of radiolytic chemical yields in natural environments. Here we show that all common marine sediment types catalyse radiolytic H 2 production, amplifying yields by up to 27X relative to pure water. In electron equivalents, the global rate of radiolytic H 2 production in marine sediment appears to be 1-2% of the global organic flux to the seafloor. However, most organic matter is consumed at or near the seafloor, whereas radiolytic H 2 is produced at all sediment depths. Comparison of radiolytic H 2 consumption rates to organic oxidation rates suggests that water radiolysis is the principal source of biologically accessible energy for microbial communities in marine sediment older than a few million years. Where water permeates similarly catalytic material on other worlds, life may also be sustained by water radiolysis.

Nature Communications↗
USGS2019

Linkages between hydrology and seasonal variations of nutrients and periphyton in a large oligotrophic subalpine lake

Periphyton is important to lake ecosystems, contributing to primary production, nutrient cycling, and benthic metabolism. Increases in periphyton growth in lakes can be indicative of changes in water quality, shifts in ecosystem structure, and increases in nutrient fluxes. In oligotrophic lakes, conservationists are interested in characterizing the influence of hydrological drivers on excessive periphyton growth along nearshore areas. We collected nutrient samples bi-weekly from groundwater and surface water during a 9-month monitoring period to evaluate the timing and availability of nutrients to eulittoral periphyton in Lake Tahoe. Groundwater discharge rates were measured synoptically using seepage meters and estimated indirectly using continuous head gradient measurements and aquifer properties estimated by slug tests. The discharge measurements made from the seepage meter measurements provide information about the spatial variability perpendicular from shore along and the change in groundwater discharge due to wave action. Algal biomass sampled from substrates and observed using underwater photographs were used to correlate seasonal growth and nutrient concentrations in groundwater and lake water. Results indicate that groundwater and nutrient discharge are temporally variable due to seasonal changes in recharge within the watershed, wave action, and lake stage. Groundwater discharge was enhanced by the seasonally-low lake stage and episodic recharge caused by precipitation falling as rain in the watershed. Increases in dissolved phosphorus and nitrate in the lake during winter are attributed to groundwater discharge and correlates to increases in algal biomass in the nearshore area. Results indicate that nutrient-rich groundwater discharge appears to stimulate seasonal periphyton blooms along the eulittoral zone of Lake Tahoe.

California↗
USGS2017

Nutrient processes at the stream-lake interface for a channelized versus unmodified stream mouth

Inorganic forms of nitrogen and phosphorous impact freshwater lakes by stimulating primary production and affecting water quality and ecosystem health. Communities around the world are motivated to sustain and restore freshwater resources and are interested in processes controlling nutrient inputs. We studied the environment where streams flow into lakes, referred to as the stream-lake interface (SLI), for a channelized and unmodified stream outlet. Channelization is done to protect infrastructure or recreational beach areas. We collected hydraulic and nutrient data for surface water and shallow groundwater in two SLIs to develop conceptual models that describe characteristics that are representative of these hydrologic features. Water, heat, and solute transport models were used to evaluate hydrologic conceptualizations and estimate mean residence times of water in the sediment. A nutrient mass balance model is developed to estimate net rates of adsorption and desorption, mineralization, and nitrification along subsurface flow paths. Results indicate that SLIs are dynamic sources of nutrients to lakes and that the common practice of channelizing the stream at the SLI decreases nutrient concentrations in pore water discharging along the lakeshore. This is in contrast to the unmodified SLI that forms a barrier beach that disconnects the stream from the lake and results in higher nutrient concentrations in pore water discharging to the lake. These results are significant because nutrient delivery through pore water seepage at the lakebed from the natural SLI contributes to nearshore algal communities and produces elevated concentrations of inorganic nutrients in the benthic zone where attached algae grow.

Water Resources Research↗
USGS2017

Shale Gas Development and Brook Trout: Scaling Best Management Practices to Anticipate Cumulative Effects

Shale gas development may involve trade-offs between energy development and benefits provided by natural ecosystems. However, current best management practices (BMPs) focus on mitigating localized ecological degradation. We review evidence for cumulative effects of natural gas development on brook trout (Salvelinus fontinalis) and conclude that BMPs should account for potential watershed-scale effects in addition to localized influences. The challenge is to develop BMPs in the face of uncertainty in the predicted response of brook trout to landscape-scale disturbance caused by gas extraction. We propose a decision-analysis approach to formulating BMPs in the specific case of relatively undisturbed watersheds where there is consensus to maintain brook trout populations during gas development. The decision analysis was informed by existing empirical models that describe brook trout occupancy responses to landscape disturbance and set bounds on the uncertainty in the predicted responses to shale gas development. The decision analysis showed that a high efficiency of gas development (e.g., 1 well pad per square mile and 7 acres per pad) was critical to achieving a win-win solution characterized by maintaining brook trout and maximizing extraction of available gas. This finding was invariant to uncertainty in predicted response of brook trout to watershed-level disturbance. However, as the efficiency of gas development decreased, the optimal BMP depended on the predicted response, and there was considerable potential value in discriminating among predictive models through adaptive management or research. The proposed decision-analysis framework provides an opportunity to anticipate the cumulative effects of shale gas development, account for uncertainty, and inform management decisions at the appropriate spatial scales.

Environmental Practice↗
USGS2016

Manual hierarchical clustering of regional geochemical data using a Bayesian finite mixture model

Interpretation of regional scale, multivariate geochemical data is aided by a statistical technique called “clustering.” We investigate a particular clustering procedure by applying it to geochemical data collected in the State of Colorado, United States of America. The clustering procedure partitions the field samples for the entire survey area into two clusters. The field samples in each cluster are partitioned again to create two subclusters, and so on. This manual procedure generates a hierarchy of clusters, and the different levels of the hierarchy show geochemical and geological processes occurring at different spatial scales. Although there are many different clustering methods, we use Bayesian finite mixture modeling with two probability distributions, which yields two clusters. The model parameters are estimated with Hamiltonian Monte Carlo sampling of the posterior probability density function, which usually has multiple modes. Each mode has its own set of model parameters; each set is checked to ensure that it is consistent both with the data and with independent geologic knowledge. The set of model parameters that is most consistent with the independent geologic knowledge is selected for detailed interpretation and partitioning of the field samples.

Colorado↗
USGS2015

Environmental DNA calibration study interim technical review report December 2014

The Environmental DNA Calibration Study (ECALS) is a multi-year study to improve the understanding and interpretation of the detection of Asian carp DNA in environmental samples (eDNA) used in early detection monitoring. eDNA surveillance programs seek to detect the presence of genetic material (DNA in cells sloughed off in slime, feces, urine, etc.) extracted from water samples; the detection of genetic material is linked to the possible presence of Asian carp. The study involves collaboration between the U.S. Army Corps of Engineers, the U.S. Geological Survey, and the U.S. Fish and Wildlife Service. ECALS addresses three major Action Items from the Asian Carp Regional Coordinating Committee (ACRCC) Asian Carp Control Strategy Framework, of which results to date are presented below. Initial ECALS efforts focused on eDNA vectors whereas marker development and calibration experiments received greater attention in 2013.

Report↗
USGS2014

Developing objectives with multiple stakeholders: adaptive management of horseshoe crabs and Red Knots in the Delaware Bay

Structured decision making (SDM) is an increasingly utilized approach and set of tools for addressing complex decisions in environmental management. SDM is a value-focused thinking approach that places paramount importance on first establishing clear management objectives that reflect core values of stakeholders. To be useful for management, objectives must be transparently stated in unambiguous and measurable terms. We used these concepts to develop consensus objectives for the multiple stakeholders of horseshoe crab harvest in Delaware Bay. Participating stakeholders first agreed on a qualitative statement of fundamental objectives, and then worked to convert those objectives to specific and measurable quantities, so that management decisions could be assessed. We used a constraint-based approach where the conservation objectives for Red Knots, a species of migratory shorebird that relies on horseshoe crab eggs as a food resource during migration, constrained the utility of crab harvest. Developing utility functions to effectively reflect the management objectives allowed us to incorporate stakeholder risk aversion even though different stakeholder groups were averse to different or competing risks. While measurable objectives and quantitative utility functions seem scientific, developing these objectives was fundamentally driven by the values of the participating stakeholders.

Environmental Management↗
USGS2014

Environmental DNA calibration study. Interim technical review report

Invasive aquatic nuisance species pose a major threat to aquatic ecosystems worldwide. Invasive Asian carps, including bighead carp (Hypophthalmichthys nobilis) and silver carp (H. molitrix) have been steadily dispersing upstream through the Mississippi, Illinois, and Des Plaines Rivers since the 1990s. To prevent further movement up the Illinois River into the Chicago Area Waterway System (CAWS, see Figures 1.1.1 to 1.1.3) and possibly Lake Michigan and the Great Lakes ecosystem, an electrical barrier has been operating near Lockport to deter the advance of Asian carp. Although one adult individual has been detected in Lockport pool of the Illinois Waterway, the leading edge of the invasion of bighead and silver carp is considered to be at RM 281.5 in Dresden Island Pool, 15 miles downstream from the barrier and 55 miles from Lake Michigan, and that front has not progressed upstream since 2006. Although spawning activity has been observed in Marseilles pool in 2012, verified capture of eggs and larvae remain downstream in Peoria pool, over 140 miles from Lake Michigan (Figure 1.1.1). Should a sustainable Asian carp population become established in the Great Lakes, native fish populations, as well as many threatened or endangered plant/animal species populations, could be impacted. In response to this threat, the Asian Carp Regional Control Committee (ACRCC) was formed in part to coordinate efforts to understand and organize against the Asian carp threat. The Asian Carp Control Strategy Framework (2012a) outlined major tasks to be completed for a better understanding of factors related to the advance of Asian carp populations towards the Great Lakes. In addition, the ACRCC formed the Monitoring and Rapid Response Workgroup to address Asian carp monitoring and removal (ACRCC 2012b).

Midwest waterways↗
USGS2012

Estimating tag loss of the Atlantic Horseshoe crab, Limulus polyphemus, using a multi-state model

The Atlantic Horseshoe crab, Limulus polyphemus, is a valuable resource along the Mid-Atlantic coast which has, in recent years, experienced new management paradigms due to increased concern about this species role in the environment. While current management actions are underway, many acknowledge the need for improved and updated parameter estimates to reduce the uncertainty within the management models. Specifically, updated and improved estimates of demographic parameters such as adult crab survival in the regional population of interest, Delaware Bay, could greatly enhance these models and improve management decisions. There is however, some concern that difficulties in tag resighting or complete loss of tags could be occurring. As apparent from the assumptions of a Jolly-Seber model, loss of tags can result in a biased estimate and underestimate a survival rate. Given that uncertainty, as a first step towards estimating an unbiased estimate of adult survival, we first took steps to estimate the rate of tag loss. Using data from a double tag mark-resight study conducted in Delaware Bay and Program MARK, we designed a multi-state model to allow for the estimation of mortality of each tag separately and simultaneously.

Delaware, New Jersey↗