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David R. Stewart

Publications and source records attributed to David R. Stewart.

17 recordsLinked to original sources

Bayesian multistate models for measuring invasive carp movement and evaluating telemetry array performance

Understanding the movement patterns of an invasive species can be a powerful tool in designing effective management and control strategies. Here, we used a Bayesian multistate model to investigate the movement of two invasive carp species, silver carp ( Hypophthalmichthys molitrix ) and bighead carp ( H. nobilis ), using acoustic telemetry. The invaded portions of the Illinois and Des Plaines Rivers, USA, are a high priority management zone in the broader efforts to combat the spread of invasive carps from reaching the Laurentian Great Lakes. Our main objective was to characterize the rates of upstream and downstream movements by carps between river pools that are maintained by navigation lock and dam structures. However, we also aimed to evaluate the efficacy of the available telemetry infrastructure to monitor carp movements through this system. We found that, on a monthly basis, most individuals of both species remained within their current river pools: averaging 76.2% of silver carp and 75.5% of bighead carp. Conversely, a smaller proportion of silver carp, averaging 14.2%, and bighead carp, averaging 13.9%, moved to downstream river pools. Movements towards upstream pools were the least likely for both species, with silver carp at an average of 6.7% and bighead carp at 7.9%. The highest probabilities for upstream movements were for fish originating from the three most downstream river pools, where most of the population recruitment occurs. However, our evaluation of the telemetry array’s effectiveness indicated low probability to detect fish in this portion of the river. We provide insights to enhance the placement and use of these monitoring tools, aiming to deepen our comprehension of these species’ movement patterns in the system.

Illinois

Nonlinear patterns of surface elevation change in coastal wetlands: The value of generalized additive models for quantifying rates of change

In the face of accelerating climate change and rising sea levels, quantifying surface elevation change dynamics in coastal wetlands can help to develop a more complete understanding of the implications of sea-level rise on coastal wetland stability. The surface elevation table-marker horizon (SET-MH) approach has been widely used to quantify and characterize surface elevation change dynamics in coastal marshes and mangrove forests. Whereas past studies that utilized the SET-MH approach have most often quantified rates of surface elevation change using simple linear regression analyses, several recent studies have shown that elevation patterns can include a diverse combination of linear and non-linear patterns. Generalized additive models (GAMs) are an extension of generalized linear models (GLMs) that have previously been used to analyze a variety of complex ecological processes such as cyclical changes in water quality, species distributions, long-term patterns in wetland area change, and palaeoecological time series. Here, we use long-term SET data to demonstrate the value of generalized additive models for analyzing non-linear patterns of surface elevation change in coastal wetlands. Additionally, we illustrate how the GAM approach can be used to effectively quantify rates of elevation change at both landscape- and local site-level scales.

Estuaries and Coasts

The abundance and persistence of Caprinae populations

Stable or growing populations may go extinct when their sizes cannot withstand large swings in temporal variation and stochastic forces. Hence, the minimum abundance threshold defining when populations can persist without human intervention forms a key conservation parameter. We identify this threshold for many populations of Caprinae , typically threatened species lacking demographic data. Doing so helps triage conservation and management actions for threatened or harvested populations. Methodologically, we used population projection matrices and simulations, with starting abundance, recruitment, and adult female survival predicting future abundance, growth rate (λ), and population trend. We incorporated mean demographic rates representative of Caprinae populations and corresponding variances from desert bighorn sheep ( Ovis canadensis nelsoni ), as a proxy for Caprinae sharing similar life histories. We found a population’s minimum abundance resulting in ≤ 0.01 chance of quasi-extinction ( QE ; population ≤ 5 adult females) in 10 years and ≤ 0.10 QE in 30 years as 50 adult females, or 70 were translocation (removals) pursued. Discovering the threshold required 3 demographic parameters. We show, however, that monitoring populations’ relationships to this threshold requires only abundance and recruitment data. This applied approach avoids the logistical and cost hurdles in measuring female survival, making assays of population persistence more practical.

Scientific Reports

Surface elevation change dynamics in coastal marshes along the northwestern Gulf of Mexico: Anticipating effects of rising sea-level and intensifying hurricanes

Accelerated sea-level rise and intensifying hurricanes highlight the need to better understand surface elevation change in coastal wetlands. We used the surface elevation table-marker horizon approach to measure surface elevation change in 14 coastal marshes along the northwestern Gulf of Mexico, within five National Wildlife Refuges in Texas (USA). During the 2014–2019 study period, the mean rate of surface elevation change was 1.96 ± 0.87 mm yr −1 (range: -1.57 to 8.37 mm yr −1 ). Vertical accretion rates varied due to landscape proximity relative to sediment inputs from Hurricane Harvey. At most sites, vertical accretion offset subsurface losses due to shallow subsidence. However, net elevation gains were often lower than recent relative sea-level rise rates, and much lower than rates expected under future sea-level rise. Because these marshes are not keeping pace with recent sea-level rise, it is unlikely that they will be able to adjust to future accelerations. Climate change threatens these Texas coastal wetlands and the ecological and economic services they provide. By characterizing the status and prospective loss of coastal marshes, our study reinforces the value of identifying local and landscape-level adaptation mechanisms that can enhance the ability of coastal marshes to adapt to threats posed by climate change.

Texas

Space use and site fidelity of wintering whooping cranes on the Texas Gulf Coast

The Aransas-Wood Buffalo population (the only non-reintroduced, migratory population) of endangered whooping cranes ( Grus americana ) overwinters along the Texas Gulf Coast, USA. Understanding whooping crane space use on the wintering grounds reveals essential aspects of this species' ecology, which subsequently assists with conservation. Using global positioning system telemetry data from marked whooping cranes during 2009–2017, we fit continuous-time stochastic process models to describe movement and home range using autocorrelated kernel density estimation (AKDE) and explored variation in home range size in relation to age, sex, reproductive status, and drought conditions. We used the Bhattacharyya coefficient of overlap and distance between home range centroids to quantify site fidelity. We examined the effects of time between winter home ranges and the sex of the crane on site fidelity using Bayesian mixed-effects beta regression. Winter whooping crane 95% AKDE home range size averaged 30.1 ± 45.2 (SD) km 2 (median = 14.3, range = 1.1–308.6). Home ranges of sub-adult females were approximately 2 times larger than those of sub-adult males or families. As drought worsened, home ranges typically expanded. Between consecutive years, the home ranges of an adult crane exhibited 68 ± 31% overlap (site fidelity), but fidelity to winter sites declined in subsequent winters. The overlap of adult home ranges with the nearest unrelated family averaged 33 ± 28%. As a whooping crane aged, overlap with its winter home range as a juvenile declined, regardless of sex. By 4 years of age, a whooping crane had approximately 14 ± 28% overlap with its juvenile winter home range. Limited evidence suggested male whooping cranes return to within 2 km of their juvenile home range by their fifth winter. Previous data obtained from aerial surveys led ecologists to assume that whooping crane families normally used small areas (~2 km 2 ) and expressed persistent site fidelity. Our analyses showed <8% of families had home ranges ≤2 km 2 , with the average area 15 times greater, and waning site fidelity over time. Our work represents an analysis of whooping crane home ranges for this population, identifying past misconceptions of winter space use and resulting in better estimates of space requirements for future conservation efforts.

Texas

Bait type influences on catch and bycatch in tandem hoop nets set in reservoirs

Tandem hoop nets have become the primary gear for sampling channel catfish Ictalurus punctatus , but suffer from high incidences of bycatch, particularly aquatic turtles that usually drown as a result. We sought to determine if bait type, ZOTE © soap and ground cheese logs, would influence catch of channel catfish (CPUE and mean TL) and bycatch of fishes and aquatic turtles. We sampled with tandem hoop nets in 13 Kentucky reservoirs (5–73 ha) using a crossover design and two sampling events. We found no difference in channel catfish catch rates between bait types, but mean sizes of fish caught using ZOTE © soap were approximately 24 mm longer compared to cheese. Fish bycatch was similar between bait types, but tandem hoop nets baited with ZOTE © soap caught up to 61% fewer turtles and mortality of turtles that were captured was up to 12% lower than those baited with cheese. Depth of net set, water temperature, and Secchi depth were environmental factors measured that affected catch and bycatch, but varied among species. Using ZOTE © soap as bait in tandem hoop nets appears to be a fairly simple and straightforward method for maintaining high catch rates of channel catfish while minimizing turtle mortality.

Kentucky

An intertebrate ecosystem engineer likely covered under the umbrella of sage-grouse conservation

Conservation practitioners often rely on areas designed to protect species of greatest conservation priority to also conserve co-occurring species (i.e., the umbrella species concept). The extent to which vertebrate species may serve as suitable umbrellas for invertebrate species, however, has rarely been explored. Sage-grouse ( Centrocercus spp.) have high conservation priority throughout much of the rangelands of western North America and are considered an umbrella species through which the conservation of entire rangeland ecosystems can be accomplished. Harvester ants are ecosystem engineers and play important roles in the maintenance and function of rangeland ecosystems. We compared indices of the abundance of western harvester ants ( Pogonomyrmex occidentalis ) and Greater Sage-Grouse ( Centrocercus urophasianus ) at 72 sites in central Wyoming, USA, in 2012. The abundance of harvester ant mounds was best predicted by a regression model that included a combination of local habitat characteristics and the abundance of sage-grouse. When controlling for habitat-related factors, areas with higher abundances of sage-grouse pellets (an index of sage-grouse abundance and/or habitat use) had higher abundances of ant mounds than areas with lower abundances of sage-grouse pellets. The causal mechanism underlying this positive relationship between sage-grouse and ant mound abundance at the fine scale could be indirect (e.g., both species prefer similar environmental conditions) or direct (e.g., sage-grouse prefer areas with a high abundance of ant mounds because ants are an important prey item during certain life stages). We observed no relationship between a broad-scale index of breeding sage-grouse density and the abundance of ant mounds. We suspect that consideration of the nonbreeding habitat of sage-grouse and finer-scale measures of sagegrouse abundance are critical to the utility of sage-grouse as an umbrella species for the conservation of harvester ants and their important role in rangeland ecosystems.

Western North American Naturalist

Simulation modeling to explore the effects of length-based harvest regulations for Ictalurus fisheries

Management of Blue Catfish Ictalurus furcatus and Channel Catfish I. punctatus for trophy production has recently become more common. Typically, trophy management is attempted with length-based regulations that allow for the moderate harvest of small fish but restrict the harvest of larger fish. However, the specific regulations used vary considerably across populations, and no modeling efforts have evaluated their effectiveness. We used simulation modeling to compare total yield, trophy biomass ( B trophy ), and sustainability (spawning potential ratio [SPR] > 0.30) of Blue Catfish and Channel Catfish populations under three scenarios: (1) current regulation (typically a length-based trophy regulation), (2) the best-performing minimum length regulation (MLR best ), and (3) the best-performing length-based trophy catfish regulation (LTR best ; “best performing” was defined as the regulation that maximized yield, B trophy , and sustainability). The B trophy produced did not differ among the three scenarios. For each fishery, the MLR best and LTR best produced greater yield (>22% more) than the current regulation and maintained sustainability at higher finite exploitation rates (>0.30) than the current regulation. The MLR best and LTR best produced similar yields and SPRs for Channel Catfish and similar yields for Blue Catfish; however, the MLR best for Blue Catfish produced more resilient fisheries (higher SPR) than the LTR best . Overall, the variation in yield, B trophy , and SPR among populations was greater than the variation among regulations applied to any given population, suggesting that population-specific regulations may be preferable to regulations applied to geographic regions. We conclude that LTRs are useful for improving catfish yield and maintaining sustainability without overly restricting harvest but are not effective at increasing the B trophy of catfish.

North American Journal of Fisheries Management

Using hierarchical Bayesian multi-species mixture models to estimate tandem hoop-net based habitat associations and detection probabilities of fishes in reservoirs

Species distribution models are useful tools to evaluate habitat relationships of fishes. We used hierarchical Bayesian multispecies mixture models to evaluate the relationships of both detection and abundance with habitat of reservoir fishes caught using tandem hoop nets. A total of 7,212 fish from 12 species were captured, and the majority of the catch was composed of Channel Catfish Ictalurus punctatus (46%), Bluegill Lepomis macrochirus (25%), and White Crappie Pomoxis annularis (14%). Detection estimates ranged from 8% to 69%, and modeling results suggested that fishes were primarily influenced by reservoir size and context, water clarity and temperature, and land-use types. Species were differentially abundant within and among habitat types, and some fishes were found to be more abundant in turbid, less impacted (e.g., by urbanization and agriculture) reservoirs with longer shoreline lengths; whereas, other species were found more often in clear, nutrient-rich impoundments that had generally shorter shoreline length and were surrounded by a higher percentage of agricultural land. Our results demonstrated that habitat and reservoir characteristics may differentially benefit species and assemblage structure. This study provides a useful framework for evaluating capture efficiency for not only hoop nets but other gear types used to sample fishes in reservoirs.

Oklahoma

Landscape-scale determinants of native and nonnative Great Plains fish distributions

Aim Landscape-scale factors may have differential effects on the distribution of native and non-native fishes and may help explain invasion success and species declines. Location Great Plains, Wyoming, USA Methods We used hierarchical Bayesian mixture models and constrained ordination techniques to evaluate associations between landscape-scale factors on native and non-native fish species richness, reproductive guilds and individual species distributions. Results Predicted responses between landscape-scale factors and native and non-native fish species richness were similar, except non-native fish species richness that was positively associated with density of oil and gas wells. Non-native fish species richness was also positively associated with native fish species richness. Spawning guild composition differed between native and non-native fishes. Canonical correspondence analysis revealed that the most abundant non-native and only a few native species were positively associated with oil and gas wells. Main conclusions The similar relationships between native and non-native fish species richness are likely evidence that they share similar ecological rules, which supports that non-native species become naturalized and they may be affected by the same environmental factors that determine distribution of native species.

Diversity and Distributions

Growth and contribution of stocked channel catfish, Ictalurus punctatus (Rafinesque, 1818): the importance of measuring post-stocking performance

In this study it was sought to quantify post-stocking growth, survival, and contribution of advanced size (178 mm total length [TL]) channel catfish Ictalurus punctatus fingerlings, something rarely done. Channel catfish populations were evaluated before (May 2010) and after (May to August 2011 and 2012) stocking. Relative abundance, stocking contribution, and growth were different ( P < 0.05) in the two study impoundments (lakes Lone Chimney and Greenleaf, Oklahoma). For fish stocked in Lake Lone Chimney, stocking contribution was lower (3&ndash;35%), and average length and weight of stocked fish by age-2 reached 230 mm TL and 85 g, whereas the stocking contribution (84&ndash;98%) and growth in length (340 mm TL) and weight (280 g) were higher by age-2 in Lake Greenleaf. Given these unambiguous differences of post-stocking performance, benchmark metrics that represent population-level information such as relative abundance and average length and weight of the sample masked these significant differences, highlighting the importance of marking hatchery-fish and then following them through time to determine the effectiveness of stocking. These results suggest that stock enhancement programmes would benefit from studies that quantify post-stocking performance of hatchery fish.

Oklahoma

Using an experimental manipulation to determine the effectiveness of a stock enhancement program

We used an experimental manipulation to determine the impact of stocking 178 mm channel catfish Ictalurus punctatus in six impoundments. The study design consisted of equal numbers (two) of control, ceased-stock, and stocked treatments that were sampled one year before and two years after stocking. Relative abundance, growth, size structure, and average weight significantly changed over time based on samples collected with hoop nets. Catch rates decreased at both ceased-stock lakes and increased for one stocked lake, while growth rates changed for at least one ceased-stock and stocked lake. The average weight of channel catfish in the ceased-stock treatment increased by 6% and 25%, whereas weight decreased by 28% and 78% in both stocked lakes. The variability in observed responses between lakes in both ceased-stock and stocked treatments indicates that a one-size-fits-all stocking agenda is impractical, suggesting lake specific and density-dependent mechanisms affect channel catfish population dynamics.

Freshwater Ecology

Effect of bait and gear type on channel catfish catch and turtle bycatch in a reservoir

Hoop nets have become the preferred gear choice to sample channel catfish Ictalurus punctatus but the degree of bycatch can be high, especially due to the incidental capture of aquatic turtles. While exclusion and escapement devices have been developed and evaluated, few have examined bait choice as a method to reduce turtle bycatch. The use of Zote&trade; soap has shown considerable promise to reduce bycatch of aquatic turtles when used with trotlines but its effectiveness in hoop nets has not been evaluated. We sought to determine the effectiveness of hoop nets baited with cheese bait or Zote&trade; soap and trotlines baited with shad or Zote&trade; soap as a way to sample channel catfish and prevent capture of aquatic turtles. We used a repeated-measures experimental design and treatment combinations were randomly assigned using a Latin-square arrangement. Eight sampling locations were systematically selected and then sampled with either hoop nets or trotlines using Zote&trade; soap (both gears), waste cheese (hoop nets), or cut shad (trotlines). Catch rates did not statistically differ among the gear&ndash;bait-type combinations. Size bias was evident with trotlines consistently capturing larger sized channel catfish compared to hoop nets. Results from a Monte Carlo bootstrapping procedure estimated the number of samples needed to reach predetermined levels of sampling precision to be lowest for trotlines baited with soap. Moreover, trotlines baited with soap caught no aquatic turtles, while hoop nets captured many turtles and had high mortality rates. We suggest that Zote&trade; soap used in combination with multiple hook sizes on trotlines may be a viable alternative to sample channel catfish and reduce bycatch of aquatic turtles.

Oklahoma

Spatial structuring within a reservoir fish population: implications for management

Spatial structuring in reservoir fish populations can exist because of environmental gradients, species-specific behaviour, or even localised fishing effort. The present study investigated whether white crappie exhibited evidence of improved population structure where the northern more productive half of a lake is closed to fishing to provide waterfowl hunting opportunities. Population response to angling was modelled for each substock of white crappie (north (protected) and south (unprotected) areas), the entire lake (single-stock model) and by combining simulations of the two independent substock models (additive model). White crappie in the protected area were more abundant, consisting of larger, older individuals, and exhibited a lower total annual mortality rate than in the unprotected area. Population modelling found that fishing mortality rates between 0.1 and 0.3 resulted in sustainable populations (spawning potential ratios (SPR) >0.30). The population in the unprotected area appeared to be more resilient (SPR > 0.30) at the higher fishing intensities (0.35&ndash;0.55). Considered additively, the whole-lake fishery appeared more resilient than when modelled as a single-panmictic stock. These results provided evidence of spatial structuring in reservoir fish populations, and we recommend model assessments used to guide management decisions should consider those spatial differences in other populations where they exist.

Marine and Freshwater Research

Precision of channel catfish catch estimates using hoop nets in larger Oklahoma reservoirs

Hoop nets are rapidly becoming the preferred gear type used to sample channel catfish Ictalurus punctatus , and many managers have reported that hoop nets effectively sample channel catfish in small impoundments (<200 ha). However, the utility and precision of this approach in larger impoundments have not been tested. We sought to determine how the number of tandem hoop net series affected the catch of channel catfish and the time involved in using 16 tandem hoop net series in larger impoundments (>200 ha). Hoop net series were fished once, set for 3 d; then we used Monte Carlo bootstrapping techniques that allowed us to estimate the number of net series required to achieve two levels of precision (relative standard errors [RSEs] of 15 and 25) at two levels of confidence (80% and 95%). Sixteen hoop net series were effective at obtaining an RSE of 25 with 80% and 95% confidence in all but one reservoir. Achieving an RSE of 15 was often less effective and required 18-96 hoop net series given the desired level of confidence. We estimated that an hour was needed, on average, to deploy and retrieve three hoop net series, which meant that 16 hoop net series per reservoir could be "set" and "retrieved" within a day, respectively. The estimated number of net series to achieve an RSE of 25 or 15 was positively associated with the coefficient of variation (CV) of the sample but not with reservoir surface area or relative abundance. Our results suggest that hoop nets are capable of providing reasonably precise estimates of channel catfish relative abundance and that the relationship with the CV of the sample reported herein can be used to determine the sampling effort for a desired level of precision.

North American Journal of Fisheries Management

Verification of otolith identity used by fisheries scientists for aging channel catfish

Previously published studies of the age estimation of channel catfish Ictalurus punctatus based on otoliths have reported using the sagittae, whereas it is likely they were actually using the lapilli. This confusion may have resulted because in catfishes (ostariophyseans) the lapilli are the largest of the three otoliths, whereas in nonostariophysean fish the sagittae are the largest. Based on (1) scanning electron microscope microphotographs of channel catfish otoliths, (2) X-ray computed tomography scans of a channel catfish head, (3) descriptions of techniques used to removed otoliths from channel catfish reported in the literature, and (4) a sample of channel catfish otoliths received from fisheries biologists from around the country, it is clear that lapilli are most often used for channel catfish aging studies, not sagittae, as has been previously reported. Fisheries scientists who obtain otoliths from channel catfish can use the information in this paper to correctly identify otolith age.

Transactions of the American Fisheries Society

The efficacy of mass-marking channel catfish fingerlings by immersion in oxytetracycline

Oxytetracycline (OTC) has been extensively used for marking a variety of fish species, but has never been successfully used to mark channel catfish Ictalurus punctatus. Channel catfish fingerlings (~ 25 mm TL) obtained from the Oklahoma Department of Wildlife Conservation at Byron Fish Hatchery were kept in Living Streams (791 to 1,018 L) equipped with recirculation units. Marking trials consisted of immersing channel catfish in one of three concentrations (250, 450, and 700 mg/L) OTC hydrochloride [HCl] for 6 hours. Samples of channel catfish were obtained from each group at 1-week and 4-week postimmersion. Lapilli otoliths and pectoral spines were removed to assess mark presence with an epi-fluorescent compound microscope. After one week, no marks were detected on pectoral spines for all treatments, mark detection on otoliths depended on concentration, but never exceeded 43% (700 mg/L). After four weeks, all otoliths and pectoral spines were determined marked for 700 mg/L OTC, 20% for fish immersed in 450 mg/L OTC, and 0% were marked after four weeks at the 250 mg/L OTC. Results show, channel catfish fingerlings can be successfully marked with immersion in OTC at 700 mg/L for at least 6 hours.

Proceedings of the Oklahoma Academy of Science