Geology topics

David N. Koons

Publications and source records attributed to David N. Koons.

16 recordsLinked to original sources

USGS2025

Not all spatially structured populations are metapopulations: Re-examining paradigms for a threatened shorebird

For at-risk species, understanding population vital rates is imperative for developing informed conservation strategies and population models. Managers often assume that species that are spatially distributed among patches of suitable habitat meet the criteria of a metapopulation. Metapopulation dynamics are determined not only by within-patch birth and death processes but also by between-patch dispersal movements of individuals that are infrequent but critical to maintaining population viability across space and time. To conserve and manage such species, an understanding of all these vital rates, including connectivity, is required. The degree to which the northern Great Plains piping plover ( Charadrius melodus ) breeding population functions as a metapopulation depends, in part, on the rate of movement among patchily distributed breeding areas. Here, we examined annual adult survival and breeding dispersal probabilities for 2582 individuals at two spatial scales within the northern Great Plains piping plover breeding population between 2014 and 2019. Inconsistent with a metapopulation structure, annual survival varied minimally among breeding regions but did vary across years. We also found that breeding dispersal probabilities were temporally variable, high, and unbalanced at both spatial scales examined, suggesting high connectivity in contrast to metapopulation dynamics. Further, we detected context-dependent effects of reproductive success on dispersal decisions. Individuals were more likely to disperse from the northern Missouri River to the US Alkali Wetlands following nest failure due to inundation or severe storms (including in the year prior to dispersal), whereas dispersal from the US Alkali Wetlands to the northern Missouri River decreased following successful nest attempts. Individuals also decreased dispersal from the US Alkali Wetlands to the northern Missouri River in response to renesting attempts in both the year of interest and the year prior to dispersal. Our results contradict the paradigm that northern Great Plains piping plovers are structured as a metapopulation and instead suggest a patchily distributed, likely panmictic, population. Our findings have implications for the conservation and management of this listed species and are also a general reminder that in the absence of robust knowledge of movement, spatial variation in birth and death processes across patches should not be conflated with a metapopulation structure.

Montana, North Dakota, South Dakota↗

USGS2025

Observational, virological, and serological data provide insights into an outbreak of highly pathogenic avian influenza among wild birds on the Yukon-Kuskokwim Delta, Alaska in 2022

In 2021–22, clade 2.3.4.4b highly pathogenic avian influenza (HPAI) viruses were introduced by wild birds into North America, leading to geographically widespread disease. In response to HPAI outbreaks throughout late 2021 and early 2022, we recorded observations of sick and dead birds, estimated abundance of carcasses, collected swab and sera samples to detect viruses, and monitored bird nesting on the Yukon-Kuskokwim Delta region of Alaska to document potential effects of disease. Thirty-six reports of sick and dead birds were registered across the region. Nineteen carcasses were opportunistically collected for diagnostic testing, of which 12 were confirmed to be infected with clade 2.3.4.4b HPAI viruses. Carcass abundance estimates from line-distance sampling provided evidence that the most common species of dead birds from the western Yukon-Kuskokwim Delta region were Cackling Goose ( Branta hutchinsii minima ), Glaucous Gull ( Larus hyperboreus ), and Black Brant ( Branta bernicla nigricans ). Only one paired cloacal and oropharyngeal swab sample from a Northern Pintail ( Anas acuta ) tested positive for clade 2.3.4.4b HPAI virus, out of 464 live-captured duck and goose samples. Of 195 sera samples from waterfowl screened for antibodies reactive to influenza A viruses, antibodies were found in 41–98% of samples collected from Emperor Goose ( Anser canagicus ), Cackling Goose, Black Brant, and Spectacled Eider ( Somateria fischeri ). In addition, 15–98% of the same sera samples were reactive to a clade 2.3.4.4b H5 antigen. Fewer Black Brant and Emperor Goose nests were found on long-term study plots during 2022 than in previous years. Collectively, we found that HPAI viruses affected at least seven species of wild birds inhabiting the region during 2022. The full scope of impacts of HPAI at this location during 2022 is unknown, but our data indicate that acute effects to avian population health on the Yukon-Kuskokwim Delta region were likely modest.

Alaska↗

USGS2022

Implications of habitat-driven survival and dispersal on recruitment in a spatially structured piping plover population

Natal survival and dispersal have important consequences for populations through the movement of genes and individuals. Metapopulation theory predicts either balanced natal dispersal among regions or source–sink dynamics, which can dramatically change population structure. For species reliant on dynamic, early-successional habitats, availability and location of habitat will shift from year to year, requiring primiparous individuals to locate an appropriate breeding habitat. We estimated hatch-year survival to adulthood and natal dispersal rates between two breeding groups of Northern Great Plains piping plovers ( Charadrius melodus ) from four cohorts ( n = 2669 total individuals; 2014–2017). Hatch-year survival to adulthood was slightly higher for individuals hatched on the Missouri River than on the US Alkali Wetlands but declined over time. Individuals hatched on the US Alkali Wetlands were more likely to disperse to breed on the Missouri River (0.33 [0.20, 0.48]) than vice versa (0.17 [0.11, 0.24]). When more habitat was available at the natal site than in the prior year, natal dispersal rates increased. However, despite higher recruitment rates as a result of higher natal fidelity, the Missouri River showed lower total recruitment with a declining trend in the number of recruits, largely due to differences in abundance between breeding groups. Overall, unbalanced, high natal dispersal rates within the Northern Great Plains indicate high connectivity among distinct regions with different water regimes on the Missouri River and on the US Alkali Wetlands driven by fluctuating availability of habitat. Our results suggest that plovers in the Northern Great Plains take advantage of dynamic habitats where they are available in a broad geographic area, which is consistent with a spatially structured panmictic population rather than a true metapopulation, but further research on adult breeding dispersal is needed to clarify population structure.

North Dakota, South Dakota↗

USGS2022

Context-dependent variation in persistence of host populations in the face of disease

Research Highlight : Valenzuela-Sánchez, A., Azat, C., Cunningham, A. A., Delgado, S., Bacigalupe, L. D., Beltrand, J., Serrano, J. M., Sentenac, H., Haddow, N., Toledo, V., Schmidt, B. R., & Cayuela, H. (2022). Interpopulation differences in male reproductive effort drive the population dynamics of a host exposed to an emerging fungal pathogen. Journal of Animal Ecology , 00 , 1– 12. https://doi.org/10.1111/1365-2656.13603 . Understanding the nuances of population persistence in the face of a stressor can help predict extinction risk and guide conservation actions. However, the exact mechanisms driving population stability may not always be known. In this paper, Valenzuela-Sánchez et al. (2022) integrate long-term mark–recapture data, focal measurements of reproductive effort, a population matrix model and inferences on life-history variation to reveal differences in demographic response to disease in a susceptible frog species ( Rhinoderma darwinii ). Valenzuela-Sánchez et al. found that demographic compensation via recruitment explained the positive population growth rate in their high disease prevalence population whereas the low disease prevalence population did not compensate and thus had decreasing population growth. Compensatory recruitment was likely due to the high probability of males brooding, and the high number of brooded larvae in the high prevalence population compared to low prevalence and disease-free populations. Valenzuela-Sánchez et al. also document faster generation times in the high prevalence population, which may indicate a faster life history that may be contributing to the population's ability to compensate for reduced survival. Lastly, the authors find a positive relationship between disease prevalence and the proportion of juveniles in a given population that suggest that there may be a threshold for disease prevalence that triggers increased reproductive effort. Altogether, their study provides novel support for increased reproductive effort as the pathway for compensatory recruitment leading to increasing population growth despite strong negative effects of disease on adult survival. Their results also caution the overgeneralization of the effects of stressors (e.g. disease) on population dynamics, where context-dependent responses may differ among host populations of a given species.

Journal of Animal Ecology↗

USGS2021

Experimental evaluation of predator exclosures on nest, chick, and adult survival of piping plovers

Species of conservation concern often receive intensive management to improve vital rates and facilitate recovery. Piping plovers ( Charadrius melodus ) are federally listed in the United States and concerns over nest depredation have prompted widespread use of plover-permeable predator exclosures placed around nests (0.5–2-m radius). While effectiveness of exclosures for improving nest survival has been demonstrated, concerns remain about decreased chick survival (through predator cueing or density-dependent processes) or increased vulnerability of adults to predation (ambush as adult leaves exclosure). Either one of these concerns could demographically outweigh the benefits of increased nest survival. During 2014–2016, we conducted an experiment designed to evaluate survival of uniquely identified nests ( n = 418), chicks ( n = 453), and adults ( n = 367) at wetlands across the Northern Great Plains, USA. We assigned wetlands ( n 2014 = 26, n 2015 = 28, n 2016 = 25) into 2 groups: wetlands in which half of the nests received exclosures and wetlands in which none of the nests received exclosures. Exclosed nests had greater cumulative survival (0.73 [85% CI = 0.70–0.77]) than unexclosed nests at treatment wetlands (0.58 [0.54–0.62]) or unexclosed nests at control wetlands (0.52 [0.49–0.56]). Survival to fledging was highest for chicks hatched from exclosed nests (0.51 [0.47–0.56]), and similar between chicks hatched from unexclosed nests at treatment (0.34 [0.30–0.39]) and control (0.37 [0.32–0.42]) wetlands. Cumulative survival of adults during incubation varied by exclosure status, but adults associated with exclosed nests (0.90 [0.88–0.93]) and unexclosed nests at treatment wetlands (0.89 [0.86–0.92]) had greater survival than those associated with unexclosed nests at control wetlands (0.75 [0.64–0.84]). Adult annual survival rates varied by year (0.79–0.95) but not by exclosure status. The positive influence of exclosures on nest survival was not offset by a reduction in chick or adult survival, indicating that exclosures are a viable tool for piping plover conservation.

Montana, North Dakota↗

USGS2021

Spatial variation in population dynamics of northern Great Plains piping plovers

Metapopulation dynamics are determined not only by within-patch birth and death processes but also by between-patch movements of individuals (emigration and immigration). To conserve and manage a species that has a metapopulation structure, defined by local populations that are distributed among patches of suitable habitat, we need to understand each of these vital rates. For the federally listed northern Great Plains Charadrius melodus (Ord, 1824) (piping plover), managers assumed a metapopulation structure consisting of four breeding groups with low, balanced dispersal, which resulted in low extinction risk in a simulation-based viability study. The degree to which the northern Great Plains piping plover breeding population functions as a metapopulation depends on the rate of movement amongst breeding areas. Sources of variation in survival, dispersal probabilities, and dispersal distances were examined for hatch-year and adult piping plovers breeding in the northern Great Plains from 2014 to 2019 focusing on four management units (U.S. Alkali Wetlands, Lake Sakakawea, Garrison Reach of the Missouri River, and Lake Oahe). Additionally, renesting probabilities, renest reproductive success, and reproductive output were investigated from 2014 to 2016 in each of these areas to understand within-patch productivity. This report includes two major sections: (1) a presentation that includes the context, results, and implications of the study, followed by a detailed text methodology, and (2) an appendix that provides synthesized estimates of piping plover vital rates from throughout their range. River and alkali wetland habitats seem to be of higher quality than reservoir habitats, although alkali wetland habitats have lower annual survival, lower reproductive output, and lower fidelity probabilities than riverine habitats. Habitat availability drove dispersal probabilities and dispersal distances for hatch-year and adult piping plovers. Renesting propensity and renest reproductive success were generally low, suggesting that renesting is an uncommon and unproductive strategy to replace most lost reproductive attempts. Estimates indicated high connectivity between the U.S. Alkali Wetlands and the northern river units (Lake Sakakawea, Garrison Reach, Lake Oahe) of the Missouri River, suggesting that the assumed metapopulation structure and population viability may need to be reassessed.

Montana, North Dakota, South Dakota↗

USGS2021

Impacts of extreme environmental disturbances on piping plover survival are partially moderated by migratory connectivity

Effective conservation for listed migratory species requires an understanding of how drivers of population decline vary spatially and temporally, as well as knowledge of range-wide connectivity between breeding and nonbreeding areas. Environmental conditions distant from breeding areas can have lasting effects on the demography of migratory species, yet these consequences are often the least understood. Our objectives were to 1) evaluate associations between survival and extreme environmental disturbances at nonbreeding areas, including hurricanes, harmful algal blooms, and oil spills, and 2) estimate migratory connectivity between breeding and nonbreeding areas of midcontinental piping plovers ( Charadrius melodus ). We used capture and resighting data from 5067 individuals collected between 2002 and 2019 from breeding areas across the midcontinent, and nonbreeding areas throughout the Gulf of Mexico and southern Atlantic coasts of North America. We developed a hidden Markov multistate model to estimate seasonal survival and account for unobservable geographic locations. Hurricanes and harmful algal blooms were negatively associated with nonbreeding season survival, but we did not detect a similarly negative relationship with oil spills. Our results indicated that individuals from separate breeding areas mixed across nonbreeding areas with low migratory connectivity. Mixing among individuals in the nonbreeding season may provide a buffering effect against impacts of extreme events on any one breeding region. Our results suggest that understanding migratory connectivity and linking seasonal threats to population dynamics can better inform conservation strategies for migratory shorebirds.

Biological Conservation↗

USGS2017

Temporal variation in survival and recovery rates of lesser scaup: A response

We recently analyzed long-term (1951–2011) continental band-recovery data from lesser scaup ( Aythya affinis ) and demonstrated that harvest rates declined through time, but annual survival rates exhibited no such trends; moreover, annual harvest and survival rates were uncorrelated for all age-sex classes. We therefore concluded that declining fecundity was most likely responsible for recent population declines, rather than changes in harvest or survival. Lindberg et al. ( 2017 ) critiqued our conclusions, arguing that we did little more than fail to reject a null hypothesis of compensatory mortality, postulated ecologically unrealistic changes in fecundity, and failed to give sufficient consideration to additive harvest mortality. Herein, we re-summarize our original evidence indicating that harvest has been compensatory, or at most weakly additive, and demonstrate that our analysis had sufficient power to detect strongly additive mortality if it occurred. We further demonstrate that our conclusions were not confounded by population size, band loss, or individual heterogeneity, as suggested by Lindberg et al. ( 2017 ), and we provide additional support for our conjecture that low fecundity played a major role in declining scaup populations during 1983–2006. We therefore reiterate our original management recommendations: given low harvest rates and lack of demonstrable effect on scaup survival, harvest regulations could return to more liberal frameworks, and waterfowl biologists should work together to continue banding lesser scaup and use these data to explore alternative hypotheses to identify the true ecological causes of population change, given that it is unlikely to be excessive harvest.

Journal of Wildlife Management↗

USGS2016

Temporal variation in survival and recovery rates of lesser scaup

Management of lesser scaup (Aythya affinis) has been hindered by access to reliable data on population trajectories and vital rates. We conducted a Bayesian analysis of historical (1951–2011) band-recovery data throughout North America to estimate annual survival and recovery rates for juvenile and adult male and female lesser scaup to determine if increasing harvest or declining survival rates have contributed to population changes and to determine if harvest has been primarily additive or compensatory. Annual recovery rates were low, ranging from 1% to 4% for adults and 2% to 10% for juveniles during most years, with trend models indicating that recovery rates have declined through time for all age–sex classes. Annual survival (mid-Aug to mid-Aug) averaged 0.402 (σ ̂ 0.043) for juvenile males, 0.416 (σ ̂ 0.067) for juvenile females, 0.689 (σ ̂ 0.109) for adult males, and 0.602 (σ ̂ 0.115) for adult females, where σ ̂ represents an estimate of annual process variation in each survival rate. Annual survival rates exhibited no evidence of long-term declines or negative correlations with annual recovery rates (i.e., an index of harvest intensity) for any age–sex class, suggesting that declining fecundity was the most likely explanation for population declines during 1975–2005. We conclude that hunting mortality played a minor role in affecting population dynamics of lesser scaup and waterfowl managers could take a less cautious approach in managing harvest, especially if recruiting or maintaining waterfowl hunters are viewed as important management objectives.

Journal of Wildlife Management↗

USGS2015

Combined effects of climate, predation, and density dependence on Greater and Lesser Scaup population dynamics

An understanding of species relationships is critical in the management and conservation of populations facing climate change, yet few studies address how climate alters species interactions and other population drivers. We use a long-term, broad-scale data set of relative abundance to examine the influence of climate, predators, and density dependence on the population dynamics of declining scaup ( Aythya ) species within the core of their breeding range. The state-space modeling approach we use applies to a wide range of wildlife species, especially populations monitored over broad spatiotemporal extents. Using this approach, we found that immediate snow cover extent in the preceding winter and spring had the strongest effects, with increases in mean snow cover extent having a positive effect on the local surveyed abundance of scaup. The direct effects of mesopredator abundance on scaup population dynamics were weaker, but the results still indicated a potential interactive process between climate and food web dynamics (mesopredators, alternative prey, and scaup). By considering climate variables and other potential effects on population dynamics, and using a rigorous estimation framework, we provide insight into complex ecological processes for guiding conservation and policy actions aimed at mitigating and reversing the decline of scaup.

Ecological Applications↗

USGS2014

Previous success and current body condition determine breeding propensity in Lesser Scaup: evidence for the individual heterogeneity hypothesis

The decision to breed influences an individual's current and future reproduction, and the proportion of individuals that breed is an important determinant of population dynamics. Age, experience, individual quality, and environmental conditions have all been demonstrated to influence breeding propensity. To elucidate which of these factors exerts the greatest influence on breeding propensity in a temperate waterfowl, we studied female Lesser Scaup ( Aythya affinis ) breeding in southwestern Montana. Females were captured during the breeding seasons of 2007–2009, and breeding status was determined on the basis of (1) presence of an egg in the oviduct or (2) blood plasma vitellogenin (VTG) levels. Presence on the study site in the previous year, a proxy for adult female success, was determined with stable isotope signatures of a primary feather collected at capture. Overall, 57% of females had evidence of breeding at the time of capture; this increased to 86% for females captured on or after peak nest initiation. Capture date and size-adjusted body condition positively influenced breeding propensity, with a declining body-condition threshold through the breeding season. We did not detect an influence of age on breeding propensity. Drought conditions negatively affected breeding propensity, reducing the proportion of breeding females to 0.85 (SE = 0.05) from 0.94 (SE = 0.03) during normal-water years. A female that was present in the previous breeding season was 5% more likely to breed than a female that was not present then. The positive correlation between age and experience makes it difficult to differentiate the roles of age, experience, and individual quality in reproductive success in vertebrates. Our results indicate that individual quality, as expressed by previous success and current body condition, may be among the most important determinants of breeding propensity in female Lesser Scaup, providing further support for the individual heterogeneity hypothesis.

Montana↗

USGS2014

Lesser Scaup

No abstract available.

Book chapter↗

USGS2014

Drivers of waterfowl population dynamics: from teal to swans

Waterfowl are among the best studied and most extensively monitored species in the world. Given their global importance for sport and subsistence hunting, viewing and ecosystem functioning, great effort has been devoted since the middle part of the 20th century to understanding both the environmental and demographic mechanisms that influence waterfowl population and community dynamics. Here we use comparative approaches to summarise and contrast our understanding of waterfowl population dynamics across species as short-lived as the teal Anas discors and A.crecca to those such as the swans Cygnus sp. which have long life-spans. Specifically, we focus on population responses to vital rate perturbations across life history strategies, discuss bottom-up and top-down responses of waterfowl populations to global change, and summarise our current understanding of density dependence across waterfowl species. We close by identifying research needs and highlight ways to overcome the challenges of sustainably managing waterfowl populations in the 21st century.

Wildfowl↗

USGS2013

Time constraints in temperate-breeding species: Influence of growing season length on reproductive strategies

Organisms that reproduce in temperate regions have limited time to produce offspring successfully, and this constraint is expected to be more pronounced in areas with short growing seasons. Information concerning how reproductive ecology of endotherms might be influenced by growing season length (GSL) is rare, and species that breed over a broad geographic range provide an opportunity to study the effects of time constraints on reproductive strategies. We analyzed data from a temperate‐breeding bird, the lesser scaup Aythya affinis ; hereafter scaup, collected at eight sites across a broad gradient of GSL to evaluate three hypotheses related to reproductive compensation in response to varying time constraints. Clutch initiation date in scaup was unaffected by GSL and was unrelated to latitude; spring thaw dates had a marginal impact on timing of breeding. Clutch size declined during the nesting season, as is reported frequently in bird species, but was also unaffected by GSL. Scaup do not appear to compensate for shorter growing seasons by more rapidly reducing clutch size. This study demonstrates that this species is remarkably consistent in terms of timing of breeding and clutch size, regardless of growing season characteristics. Such inflexibility could make this species particularly sensitive to environmental changes that affect resource availabilities.

Alaska, Manitoba, Montana, North Dakota, Northwest↗

USGS2012

An accessible method for implementing hierarchical models with spatio-temporal abundance data

A common goal in ecology and wildlife management is to determine the causes of variation in population dynamics over long periods of time and across large spatial scales. Many assumptions must nevertheless be overcome to make appropriate inference about spatio-temporal variation in population dynamics, such as autocorrelation among data points, excess zeros, and observation error in count data. To address these issues, many scientists and statisticians have recommended the use of Bayesian hierarchical models. Unfortunately, hierarchical statistical models remain somewhat difficult to use because of the necessary quantitative background needed to implement them, or because of the computational demands of using Markov Chain Monte Carlo algorithms to estimate parameters. Fortunately, new tools have recently been developed that make it more feasible for wildlife biologists to fit sophisticated hierarchical Bayesian models (i.e., Integrated Nested Laplace Approximation, ‘INLA’). We present a case study using two important game species in North America, the lesser and greater scaup, to demonstrate how INLA can be used to estimate the parameters in a hierarchical model that decouples observation error from process variation, and accounts for unknown sources of excess zeros as well as spatial and temporal dependence in the data. Ultimately, our goal was to make unbiased inference about spatial variation in population trends over time.

PLoS ONE↗

USGS2007

Population inertia and its sensitivity to changes in vital rates and population structure

Because the (st)age structure of a population may rarely be stable, studies of transient population dynamics and population momentum are becoming ever more popular. Yet, studies of "population momentum" are restricted in the sense that they describe the inertia of population size resulting from a demographic transition to the stationary population growth rate. Although rarely mentioned, inertia in population size is a general phenomenon and can be produced by any demographic transition or perturbation. Because population size is of central importance in demography, conservation, and management, formulas relating the sensitivity of population inertia to changes in underlying vital rates and population structure could provide much-needed insight into the dynamics of populations with unstable (st)age structure. Here, we derive such formulas, which are readily computable, and provide examples of their potential use in studies of life history and applied arenas of population study. ?? 2007 by the Ecological Society of America.

Ecology↗