Remote sensing applications for assessing the effects of air quality on human health: An emphasis on volcanic ash and desert dust
No abstract available.
Book chapter↗
Geology topics
Dale W. Griffin
Publications and source records attributed to Dale W. Griffin.
Free tropospheric transport of microorganisms from Asia to North America
Microorganisms are abundant in the troposphere and can be transported vast distances on prevailing winds. This study measures the abundance and diversity of airborne bacteria and fungi sampled at the Mt. Bachelor Observatory (located 2.7 km above sea level in North America) where incoming free tropospheric air routinely arrives from distant sources across the Pacific Ocean, including Asia. Overall deoxyribonucleic acid (DNA) concentrations for microorganisms in the free troposphere, derived from quantitative polymerase chain reaction assays, averaged 4.94 × 10(-5) ng DNA m(-3) for bacteria and 4.77 × 10(-3) ng DNA m(-3) for fungi. Aerosols occasionally corresponded with microbial abundance, most often in the springtime. Viable cells were recovered from 27.4 % of bacterial and 47.6 % of fungal samples (N = 124), with 49 different species identified by ribosomal DNA gene sequencing. The number of microbial isolates rose significantly above baseline values on 22-23 April 2011 and 13-15 May 2011. Both events were analyzed in detail, revealing distinct free tropospheric chemistries (e.g., low water vapor, high aerosols, carbon monoxide, and ozone) useful for ruling out boundary layer contamination. Kinematic back trajectory modeling suggested air from these events probably originated near China or Japan. Even after traveling for 10 days across the Pacific Ocean in the free troposphere, diverse and viable microbial populations, including presumptive plant pathogens Alternaria infectoria and Chaetomium globosum, were detected in Asian air samples. Establishing a connection between the intercontinental transport of microorganisms and specific diseases in North America will require follow-up investigations on both sides of the Pacific Ocean.
Microbial Ecology↗
Climate change and climate systems influence and control the atmospheric dispersion of desert dust: implications for human health
The global dispersion of desert dust through Earth’s atmosphere is greatly influenced by temperature. Temporal analyses of ice core data have demonstrated that enhanced dust dispersion occurs during glacial events. This is due to an increase in ice cover, which results in an increase in drier terrestrial cover. A shorter temporal analysis of dust dispersion data over the last 40 years has demonstrated an increase in dust transport. Climate systems or events such as the North Atlantic Oscillation, the Indian Ocean subtropical High, Pacific Decadal Oscillation, and El Nino-Sothern Oscillation are known to influence global short-term dust dispersion occurrence and transport routes. Anthropogenic influences on dust transport include deforestation, harmful use of topsoil for agriculture as observed during the American Dust Bowl period, and the creation of dry seas (Aral Sea) and lakes (Lake Owens in California and Lake Chad in North Africa) through the diversion of source waters (for irrigation and drinking water supplies). Constituents of desert dust both from source regions (pathogenic microorganisms, organic and inorganic toxins) and those scavenged through atmospheric transport (i.e., industrial and agricultural emissions) are known to directly impact human and ecosystem health. This presentation will present a review of global scale dust storms and how these events can be both a detriment and benefit to various organisms in downwind environments.
Conference Paper↗
Initiation of long-term coupled microbiological, geochemical, and hydrological experimentation within the seafloor at North Pond, western flank of the Mid-Atlantic Ridge
Integrated Ocean Drilling Program (IODP) Expedition 336 successfully initiated subseafloor observatory science at a young mid-ocean-ridge flank setting. All of the drilled sites are located in the North Pond region of the Atlantic Ocean (22°45′N, 46°05′W) in 4414–4483 m water depth. This area is known from previous ocean drilling and site survey investigations as a site of particularly vigorous circulation of seawater in permeable 8 Ma basaltic basement underlying a <300 m thick sedimentary pile. Understanding how this seawater circulation affects microbial and geochemical processes in the uppermost basement was the primary science objective of Expedition 336. Basement was cored and wireline-logged in Holes U1382A and U1383C. Upper oceanic crust in Hole U1382A, which is only 50 m west of Deep Sea Drilling Project (DSDP) Hole 395A, recovered 32 m of core between 110 and 210 meters below seafloor (mbsf). Core recovery in basement was 32%, yielding a number of volcanic flow units with distinct geochemical and petrographic characteristics. A unit of sedimentary breccia containing clasts of basalt, gabbroic rocks, and mantle peridotite was found intercalated between two volcanic flow units and was interpreted as a rock slide deposit. From Hole U1383C we recovered 50.3 m of core between 69.5 and 331.5 mbsf (19%). The basalts are aphyric to highly plagioclase-olivine-phyric tholeiites that fall on a liquid line of descent controlled by olivine fractionation. They are fresh to moderately altered, with clay minerals (saponite, nontronite, and celadonite), Fe oxyhydroxide, carbonate, and zeolite as secondary phases replacing glass and olivine to variable extents. In addition to traditional downhole logs, we also used a new logging tool for detecting in situ microbial life in ocean floor boreholes—the Deep Exploration Biosphere Investigative tool (DEBI-t). Sediment thickness was ~90 m at Sites U1382 and U1384 and varied between 38 and 53 m at Site U1383. The sediments are predominantly nannofossil ooze with layers of coarse foraminiferal sand and occasional pebble-size clasts of basalt, serpentinite, gabbroic rocks, and bivalve debris. The bottommost meters of sections cored with the advanced piston corer feature brown clay. Extended core barrel coring at the sediment/ basement interface recovered <1 m of brecciated basalt with micritic limestone. Sediments were intensely sampled for geochemical pore water analyses and microbiological work. In addition, high-resolution measurements of dissolved oxygen concentration were performed on the whole-round sediment cores Major strides in ridge-flank studies have been made with subseafloor borehole observatories (CORKs) because they facilitate combined hydrological, geochemical, and microbiological studies and controlled experimentation in the subseafloor. During Expedition 336, two fully functional observatories were installed in two newly drilled holes (U1382A and U1383C) and an instrument and sampling string were placed in an existing hole (395A). Although the CORK wellhead in Hole 395A broke off and Hole U1383B was abandoned after a bit failure, these holes and installations are intended for future observatory science targets. The CORK observatory in Hole U1382A has a packer seal in the bottom of the casing and monitors/samples a single zone in uppermost oceanic crust extending from 90 to 210 mbsf. Hole U1383C was equipped with a three-level CORK observatory that spans a zone of thin basalt flows with intercalated limestone (~70–146 mbsf), a zone of glassy, thin basaltic flows and hyaloclastites (146–200 mbsf), and a lowermost zone (~200–331.5 mbsf) of more massive pillow flows with occasional hyaloclastites in the upper part.
Integrated Ocean Drilling Program: Preliminary Rep↗
In-ground disposal of human sewage can contaminate nearshore waters and reefs with bacteria and viruses
No abstract available.
Florida↗
The high life: Transport of microbes in the atmosphere
Microbes (bacteria, fungi, algae, and viruses) are the most successful types of life on Earth because of their ability to adapt to new environments, reproduce quickly, and disperse globally. Dispersal occurs through a number of vectors, such as migrating animals or the hydrological cycle, but transport by wind may be the most common way microbes spread. General awareness of airborne microbes predates the science of microbiology. People took advantage of wild airborne yeasts to cultivate lighter, more desirable bread as far back as ancient Egypt by simply leaving a mixture of grain and liquids near an open window. In 1862, Louis Pasteur's quest to disprove spontaneous generation resulted in the discovery that microbes were actually single-celled, living creatures, prevalent in the environment and easily killed with heat (pasteurization). His rudimentary experiments determined that any nutrient medium left open to the air would eventually teem with microbial life because of free-floating, colonizing cells. The same can happen in a kitchen: Opportunistic fungal and bacterial cells cause food items exposed to the air to eventually spoil.
Eos, Transactions, American Geophysical Union↗
Microbial survival in the stratosphere and implications for global dispersal
Spores of Bacillus subtilis were exposed to a series of stratosphere simulations. In total, five distinct treatments measured the effect of reduced pressure, low temperature, high desiccation, and intense ultraviolet (UV) irradiation on stratosphereisolated and ground-isolated B. subtilis strains. Environmental conditions were based on springtime data from a mid-latitude region of the lower stratosphere (20 km). Experimentally, each treatment consisted of the following independent or combined conditions: -70 °C, 56 mb, 10-12%relative humidity and 0.00421, 5.11, and 54.64 W/m 2 of UVC (200-280 nm), UVB (280-315 nm), UVA (315-400 nm), respectively. Bacteria were deposited on metal coupon surfaces in monolayers of ~1 x 10 6 spores and prepared with palagonite (particle size< 20 μm). After 6 h of exposure to the stratosphere environment, 99.9% of B. subtilis spores were killed due to UV irradiation. In contrast, temperature, desiccation, and pressure simulations without UV had no effect on spore viability up through 96 h. There were no differences in survival between the stratosphere-isolated versus ground-isolated B. subtilis strains. Inactivation of most bacteria in our simulation indicates that the stratosphere can be a critical barrier to long-distance microbial dispersal and that survival in the upper atmosphere may be constrained by UV irradiation.
Aerobiologia↗
The use of epifluorescent microscopy and quantitative polymerase chain reaction to determine the presence/absence and identification of microorganisms associated with domestic and foreign wallboard samples
Epifluorescent microscopy and quantitative polymerase chain reaction (qPCR) were utilized to determine the presence, concentration and identification of bacteria, and more specifically sulfate reducing bacteria (SRB) in subsamples of Chinese and North American wallboard, and wallboard-mine rock. Bacteria were visible in most subsamples, which included wallboard-lining paper from each side of the wallboard, wallboard filler, wallboard tape and fragments of mined wallboard rock via microscopy. Observed bacteria occurred as single or small clusters of cells and no mass aggregates indicating colonization were noted. Universal 16S qPCR was utilized to directly examine samples and detected bacteria at concentrations ranging from 1.4 x 10 3 to 6.4 x 10 4 genomic equivalents per mm 2 of paper or per gram of wallboard filler or mined rock, in 12 of 41 subsamples. Subsamples were incubated in sulfate reducing broth for ~30 to 60 days (enrichment assay) and then analyzed by universal 16S and SRB qPCR. Enrichment universal 16S qPCR detected bacteria in 32 of 41 subsamples at concentrations ranging from 1.5 x 10 4 to 4.2 x 10 7 genomic equivalents per ml of culture broth. Evaluation of enriched subsamples by SRB qPCR demonstrated that SRB were not detectable in most of the samples and if they were detected, detection was not reproducible (an indication of low concentrations, if present). Enrichment universal 16S and SRB qPCR demonstrated that viable bacteria were present in subsamples (as expected given exposure of the samples following manufacture, transport and use) but that SRB were either not present or present at very low numbers. Further, no differences in trends were noted between the various Chinese and North American wallboard samples. In all, the microscopy and qPCR data indicated that the suspected ‘sulfur emissions’ emanating from suspect wallboard samples is not due to microbial activity.
Report↗
Observations on the use of membrane filtration and liquid impingement to collect airborne microorganisms in various atmospheric environments
The influence of sample-collection-time on the recovery of culturable airborne microorganisms using a low-flow-rate membrane-filtration unit and a high-flow-rate liquid impinger were investigated. Differences in recoveries were investigated in four different atmospheric environments, one mid-oceanic at an altitude of ~10.0 m, one on a mountain top at an altitude of ~3,000.0 m, one at ~1.0 m altitude in Tallahassee, Florida, and one at ~1.0 m above ground in a subterranean-cave. Regarding use of membrane filtration, a common trend was observed: the shorter the collection period, the higher the recovery of culturable bacteria and fungi. These data also demonstrated that lower culturable counts were common in the more remote mid-oceanic and mountain-top atmospheric environments with bacteria, fungi, and total numbers averaging (by sample time or method categories) <3.0 colony-forming units (CFU) m −3 . At the Florida and subterranean sites, the lowest average count noted was 3.5 bacteria CFU m −3 , and the highest averaged 140.4 total CFU m −3 . When atmospheric temperature allowed use, the high-volume liquid impinger utilized in this study resulted in much higher recoveries, as much as 10× greater in a number of the categories (bacterial, fungal, and total CFU). Together, these data illustrated that (1) the high-volume liquid impinger is clearly superior to membrane filtration for aeromicrobiology studies if start-up costs are not an issue and temperature permits use; (2) although membrane filtration is more cost friendly and has a ‘typically’ wider operational range, its limits include loss of cell viability with increased sample time and issues with effectively extracting nucleic acids for community-based analyses; (3) the ability to recover culturable microorganisms is limited in ‘extreme’ atmospheric environments and thus the use of a ‘limited’ methodology in these environments must be taken into account; and (4) the atmosphere culls, i.e., everything is not everywhere.
Aerobiologia↗
Human enteric viruses in groundwater indicate offshore transport of human sewage to coral reefs of the Upper Florida Keys
To address the issue of human sewage reaching corals along the main reef of the Florida Keys, samples were collected from surface water, groundwater and coral [surface mucopolysaccharide layers (SML)] along a 10 km transect near Key Largo, FL. Samples were collected semi-annually between July 2003 and September 2005 and processed for faecal indicator bacteria (faecal coliform bacteria, enterococci and Clostridium perfringens) and human-specific enteric viruses (enterovirus RNA and adenovirus DNA) by (RT)-nested polymerase chain reaction. Faecal indicator bacteria concentrations were generally higher nearshore and in the coral SML. Enteric viruses were evenly distributed across the transect stations. Adenoviruses were detected in 37 of 75 samples collected (49.3%) whereas enteroviruses were only found in 8 of 75 samples (10.7%). Both viruses were detected twice as frequently in coral compared with surface water or groundwater. Offshore, viruses were most likely to be found in groundwater, especially during the wet summer season. These data suggest that polluted groundwater may be moving to the outer reef environment in the Florida Keys.
Florida↗
Nitrate-N movement in groundwater from the land application of treated municipal wastewater and other sources in the Wakulla Springs springshed, Leon and Wakulla Counties, Florida, 1966-2018
The City of Tallahassee began a pilot study in 1966 at the Southwest Farm sprayfield to determine whether disposal of treated municipal wastewater using center pivot irrigation techniques to uptake nitrate-nitrogen (nitrate-N) is feasible. Based on the early success of this project, a new, larger Southeast Farm sprayfield was opened in November 1980. However, a recent 2002 study indicated that nitrate-N from these operations may be moving through the Upper Floridan aquifer to Wakulla Springs, thus causing nitrate-N concentrations to increase in the spring water. The increase in nitrate-N combined with the generally clear spring water and abundant sunshine may be encouraging invasive plant species growth. Determining the link between the nitrate-N application at the sprayfields and increased nitrate-N levels is complicated because there are other sources of nitrate-N in the Wakulla Springs springshed, including atmospheric deposition, onsite sewage disposal systems, disposal of biosolids by land spreading, creeks discharging into sinks, domestic fertilizer application, and livestock wastes. Groundwater flow and fate and transport modeling were conducted to simulate the effect of all of the nitrate-N sources on Wakulla Springs from January 1, 1966, through December 31, 2018. The total simulated nitrate-N load to Wakulla Springs in 1967 was a relatively modest 69,000 kilograms per year (kg/yr). The major sources of the nitrate-N load in 1967 were determined to be: 1. Inflow to the study area across the lateral model boundaries at 31,000 kg/yr (45 percent), 2. Biosolids disposal by land spreading at 14,000 kg/yr (20 percent), 3. Creeks discharging into sinks at 7,800 kg/yr (11 percent), and 4. The Southwest Farm sprayfield at 4,500 kg/yr (7 percent). The total simulated nitrate-N load to Wakulla Springs in 1987 had increased dramatically to 297,000 kg/yr. The major sources of nitrate-N load in 1987 were determined to be: 1. The Southeast Farm sprayfield at 186,000 kg/yr (63 percent), 2. Biosolids at 37,000 kg/yr (12 percent), and 3. Inflow to the study area across the lateral model boundaries at 36,000 at kg/yr (12 percent). All of the other sources were 5 percent or less. The Wakulla Springs discharge can change rapidly, even during periods of little or no rainfall. This rapid change is probably the result of Wakulla Springs intermittently capturing groundwater that has been going to the Spring Creek Springs Group. This spring group is located in a marine estuary and is affected by tidally influenced saltwater intrusion. Two modeling scenarios were simulated and results are presented for 2007 and 2018 in an effort to bracket the range of possible current and future changes in the flow of Wakulla Springs. In scenario 1, it was assumed that Wakulla Springs was not capturing Spring Creek Springs Group flow. In scenario 2, it was assumed that Wakulla Springs was capturing Spring Creek Springs Group flow. Under the assumptions of scenario 1, the total simulated nitrate-N load to Wakulla Springs in 2007 was 207,200 kg/yr. The major sources of nitrate-N load were determined to be: 1. The Southeast Farm sprayfield at 111,000 kg/yr 53 percent), 2. Inflow to the study area across the lateral model boundaries at 44,000 at kg/yr (21 percent), and 3. Onsite sewage disposal systems at 24,000 kg/yr (12 percent). All of the other sources contributed 6 percent or less. Under the assumptions of scenario 2, the total simulated nitrate-N load to Wakulla Springs was 294,000 kg/yr. The major sources of nitrate-N load were determined to be: 1. The Southeast Farm sprayfield at 111,000 kg/yr (38 percent), 2. Onsite sewage disposal systems at 56,000 kg/yr (19 percent), 3. Inflow to the study area across the lateral model boundaries at 52,000 at kg/yr (18 percent), and 4. Creeks discharging into sinks at 31,000 kg/yr (11 percent). All of the other sources contributed 8 percent or less. The nitrate-N loads to Wakulla Springs from the Southeast Farm sprayfield for scenarios 1 and 2 were both 111,000 kg/yr. These amounts were the same because most of the water from the Southeast Farm sprayfield went into Wakulla Springs in both simulations. In contrast, the nitrate-N loads from onsite sewage disposal systems for scenarios 1 and 2 were 24,000 kg/yr and 56,000 kg/yr, respectively. The additional water captured by Wakulla Springs in scenario 2 came from an area that had a high density of residential and commercial sites using onsite sewage disposal systems Under the assumptions of scenario 1, the total simulated nitrate-N load to Wakulla Springs in 2018 will be 156,000 kg/yr. The major sources of nitrate-N load for scenario 1 are anticipated to be: 1. Inflow to the study area across the lateral model boundaries at 48,000 at kg/yr (31 percent), 2. The Southeast Farm sprayfield at 42,000 kg/yr (27 percent), 3. Onsite sewage disposal systems at 32,000 kg/yr (21 percent), and 4. Fertilizer at 17,000 kg/yr (11 percent). All of the other sources will contribute 5 percent or less. Under the assumptions of scenario 2, the total simulated nitrate-N load to Wakulla Springs in 2018 will be 266,000 kg/yr. The major sources of nitrate-N load for scenario 2 are anticipated to be: 1. Onsite sewage disposal systems at 80,000 kg/yr (30 percent), 2. Inflow to the study area across the lateral model boundaries at 57,000 at kg/yr (21 percent), 3. The Southeast Farm sprayfield at 43,000 kg/yr (16 percent), 4. Creeks discharging into sinks at 31,000 kg/yr (12 percent), and 5. Fertilizer at 32,000 kg/yr (12 percent). All of the other sources will contribute 6 percent or less. The simulated nitrate-N load from the Southeast Farm sprayfield to Wakulla Springs during 2007 through 2018 decreases from 111,000 kg/yr to 42,000 kg/yr in scenario 1 and decreases from 111,000 kg/yr to 43,000 kg/yr in scenario 2. Both scenarios show these decreases because of the simulated planned reduction in the concentration of nitrate-N in the wastewater used for irrigation from approximately 12 milligrams per liter (mg/L) in 2007 to 3 mg/L in 2018. In contrast, the simulated nitrate-N load from onsite sewage disposal systems to Wakulla Springs from 2007 through 2018 increases from 24,000 kg/yr to 32,000 kg/yr in scenario 1, and increases from 56,000 kg/yr to 80,000 kg/yr in scenario 2. Both scenarios show increases respective to the increases in population and residential and commercial sites using onsite sewage disposal systems. In addition, the simulated nitrate-N load to Wakulla Springs from 2007 through 2018 from inflow to the study area across the lateral model boundaries increases from 44,000 kg/yr to 48,000 kg/yr in scenario 1, and increases from 54,000 kg/yr to 57,000 kg/yr in scenario 2. Both scenarios show increases due to increasing nitrate-N levels upgradient in Leon County.
Scientific Investigations Report↗
Stratospheric microbiology at 20 km over the Pacific Ocean
An aerobiology sampling flight at 20 km was conducted on 28 April 2008 over the Pacific Ocean (36.5° N, 118–149° W), a period of time that coincided with the movement of Asian dust across the ocean. The aim of this study was to confirm the presence of viable bacteria and fungi within a transoceanic, atmospheric bridge and to improve the resolution of flight hardware processing techniques. Isolates of the microbial strains recovered were analyzed with ribosomal ribonucleic acid (rRNA) sequencing to identify bacterial species Bacillus sp., Bacillus subtilis, Bacillus endophyticus, and the fungal genus Penicillium. Satellite imagery and ground-based radiosonde observations were used to measure dust movement and characterize the high-altitude environment at the time of collection. Considering the atmospheric residency time (7–10 days), the extreme temperature regime of the environment (-75°C), and the absence of a mechanism that could sustain particulates at high altitude, it is unlikely that our samples indicate a permanent, stratospheric ecosystem. However, the presence of viable fungi and bacteria in transoceanic stratosphere remains relevant to understanding the distribution and extent of microbial life on Earth.
Aerobiologia↗
A survey of the occurrence of Bacillus anthracis in North American soils over two long-range transects and within post-Katrina New Orleans
Soil samples were collected along a north-south transect extending from Manitoba, Canada, to the US-Mexico border near El Paso, Texas in 2004 (104 samples), a group of sites within New Orleans, Louisiana following Hurricane Katrina in 2005 (19 samples), and a Gulf Coast transect extending from Sulphur, Louisiana, to DeFuniak Springs, Florida, in 2007 (38 samples). Samples were collected from the top 40 cm of soil and were screened for the presence of total Bacillus species and Bacillus anthracis (anthrax), specifically using multiplex-polymerase chain reaction (PCR). Using an assay with a sensitivity of ???170 equivalent colony-forming units (CFU) g -1 field moist soil, the prevalence rate of Bacillus sp./B. anthracis in the north-south transect and the 2005 New Orleans post-Katrina sample set were 20/5% and 26/26%, respectively. Prevalence in the 2007 Gulf Coast sample set using an assay with a sensitivity of ???4 CFU g -1 of soil was 63/0%. Individual transect-set data indicate a positive relation between occurrences of species and soil moisture or soil constituents (i.e., Zn and Cu content). The 2005 New Orleans post-Katrina data indicated that B. anthracis is readily detectable in Gulf Coast soils following flood events. The data also indicated that occurrence, as it relates to soil chemistry, may be confounded by flood-induced dissemination of germinated cells and the mixing of soil constituents for short temporal periods following an event.
Applied Geochemistry↗
Eukaryotic viruses in wastewater samples from the United States
Human fecal matter contains a large number of viruses, and current bacterial indicators used for monitoring water quality do not correlate with the presence of pathogenic viruses. Adenoviruses and enteroviruses have often been used to identify fecal pollution in the environment; however, other viruses shed in fecal matter may more accurately detect fecal pollution. The purpose of this study was to develop a baseline understanding of the types of viruses found in raw sewage. PCR was used to detect adenoviruses, enteroviruses, hepatitis B viruses, herpesviruses, morbilliviruses, noroviruses, papillomaviruses, picobirnaviruses, reoviruses, and rotaviruses in raw sewage collected throughout the United States. Adenoviruses and picobirnaviruses were detected in 100% of raw sewage samples and 25% and 33% of final effluent samples, respectively. Enteroviruses and noroviruses were detected in 75% and 58% of raw sewage samples, respectively, and both viral groups were found in 8% of final effluent samples. This study showed that adenoviruses, enteroviruses, noroviruses, and picobirnaviruses are widespread in raw sewage. Since adenoviruses and picobirnaviruses were detected in 100% of raw sewage samples, they are potential markers of fecal contamination. Additionally, this research uncovered previously unknown sequence diversity in human picobirnaviruses. This baseline understanding of viruses in raw sewage will enable educated decisions to be made regarding the use of different viruses in water quality assessments. Copyright ?? 2009, American Society for Microbiology. All Rights Reserved.
Applied and Environmental Microbiology↗
Desert Dust Storm Microbiology: Issues in Planetary Health
Explore the source record for details and available documents.
Book chapter↗
African desert dust in the Amazon Basin: implications for human and ecosystem health
No abstract available.
Amazon Basin↗