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D. R. Smith

Publications and source records attributed to D. R. Smith.

At least 19 recordsLinked to original sources

Temporal evaluation of estrogenic endocrine disruption markers in smallmouth bass (Micropterus dolomieu) reveals seasonal variability in intersex

A reconnaissance project completed in 2009 identified intersex and elevated plasma vitellogenin in male smallmouth bass inhabiting the Missisquoi River, VT. In an attempt to identify the presence and seasonality of putative endocrine disrupting chemicals or other factors associated with these observations, a comprehensive reevaluation was conducted between September 2012 and June 2014. Here, we collected smallmouth bass from three physically partitioned reaches along the river to measure biomarkers of estrogenic endocrine disruption in smallmouth bass. In addition, polar organic chemical integrative samples (POCIS) were deployed to identify specific chemicals associated with biological observations. We did not observe biological differences across reaches indicating the absence of clear point source contributions to the observation of intersex. Interestingly, intersex prevalence and severity decreased in a stepwise manner over the timespan of the project. Intersex decreased from 92.8% to 28.1%. The only significant predictor of intersex prevalence was year of capture, based on logistic regression analysis. The mixed model of fish length and year-of-capture best predicted intersex severity. Intersex severity was also significantly different across late summer and early spring collections indicating seasonal changes in this metric. Plasma vitellogenin and liver vitellogenin Aa transcript abundance in males did not indicate exposure to estrogenic endocrine disrupting chemicals at any of the four sample collections. Analysis of chemicals captured by the POCIS as well as results of screening discrete water samples or POCIS extracts did not indicate the contribution of appreciable estrogenic chemicals. It is possible that unreported changes in land-use activity have ameliorated the problem, and our observations indicate recovery. Regardless, this work clearly emphasizes that single, snap shot sampling for intersex may not yield representative data given that the manifestation of this condition within a population can change dramatically over time.

Vermont

Management and monitoring of the endangered Shenandoah salamander under climate change: Workshop report 10-12 April 2012

Here we report on a structured decision making (SDM) process to identify management strategies to ensure persistence of the federally endangered Shenandoah salamander (Plethodon shenandoah), given that it may be at increased extinction risk under projected climate change. The focus of this report is the second of two SDM workshops; in the first workshop, participants developed a prototype of the decision, including problem frame, management objectives and a suite of potential management strategies, predictive models to inform the decision and link alternatives with the objectives to identify potential solutions, and identified data needs to reduce key uncertainties in the decision. Participants in this second workshop included experts in National Park Service policy at multiple administrative levels, who refined objectives, further evaluated the initial management alternatives, and discussed policy constraints on implementing active management for the species and its high-elevation habitat. The conclusion of the second workshop was similar to that of the first: the current state of information and objectives suggest that there is some value in considering active management to reduce the long-term extinction risk for the species, though there are institutional conservative policies to implementing active management at range-wide scales. The workshop participants also emphasized a conservative NPS management philosophy, including caution in implementing management actions that may ultimately harm the system, a stated assumption that ecosystem changes were “natural” unless demonstrated otherwise (therefore not warranting active management to mitigate), and a need to demonstrate that extinction risk is tied to anthropogenic influence prior to taking active management to mitigate specific anthropogenic influences. Even within a protected area having minimal human disturbance, intertwined environmental variables and interspecific relationships that drive population trends challenge our ability to demonstrate direct links with (anthropogenically influenced) climate change and the decline of a species. Thus while this policy may reduce the potential for injurious management, it may also necessitate extraordinary resources to reduce uncertainty regarding fundamental drivers of species decline prior to taking action.

Natural Resource Report

Patterns of mortality in free-ranging California condors (Gymnogyps californianus)

We document causes of death in free-ranging California Condors (Gymnogyps californianus) from the inception of the reintroduction program in 1992 through December 2009 to identify current and historic mortality factors that might interfere with establishment of self-sustaining populations in the wild. A total of 135 deaths occurred from October 1992 (the first post-release death) through December 2009, from a maximum population-at-risk of 352 birds, for a cumulative crude mortality rate of 38%. A definitive cause of death was determined for 76 of the 98 submitted cases, 70% (53/76) of which were attributed to anthropogenic causes. Trash ingestion was the most important mortality factor in nestlings (proportional mortality rate [PMR] 73%; 8/11), while lead toxicosis was the most important factor in juveniles (PMR 26%; 13/50) and adults (PMR 67%; 10/15). These results demonstrate that the leading causes of death at all California Condor release sites are anthropogenic. The mortality factors thought to be important in the decline of the historic California Condor population, particularly lead poisoning, remain the most important documented mortality factors today. Without effective mitigation, these factors can be expected to have the same effects on the sustainability of the wild populations as they have in the past.

Journal of Wildlife Diseases

Beach characteristics mitigate effects of onshore wind on horseshoe crab spawning: Implications for matching with shorebird migration in Delaware Bay

Disruption of food availability by unfavorable physical processes at energetically demanding times can limit recruitment of migratory species as predicted by the match–mismatch hypothesis. Identification and protection of disruption‐resistant habitat could contribute to system resilience. For example, horseshoe crab Limulus polyphemus spawning and shorebird stopover must match temporally in Delaware Bay for eggs to be available to shorebirds. Onshore winds that generate waves can create a mismatch by delaying horseshoe crab spawning. We examined effects of beach characteristics and onshore winds on spawning activity at five beaches when water temperatures were otherwise consistent with early spawning activity. Onshore winds resulted in reduced spawning activity during the shorebird stopover, when spawning typically peaks in late May. During the period with high onshore wind, egg density was highest on the foreshore exposed to the lowest wave heights. Onshore wind was low in early June, and spawning and egg densities were high at all sites, but shorebirds had departed. Beaches that can serve as a refuge from wind and waves can be identified by physical characteristics and orientation to prevailing winds and should receive special conservation status, especially in light of predicted increases in climate change‐induced storm frequency. These results point to a potential conservation strategy that includes coastal management for adapting to climate change‐induced mismatch of migrations.

Delaware

Tag-based estimates of annual fishing mortality of a mixed atlantic coastal stock of striped bass

Tag-based estimates of annual survival and fishing mortality rates supplement annual stock assessments of migratory striped bass Morone saxatilis in the interjurisdictional fishery along the Atlantic coast. We estimated a 17-year time series of annual survival and fishing mortality (F) rates for striped bass (>711 mm) tagged during winter trawl studies (1988-2004) off the coasts of North Carolina and Virginia. The geographic and temporal distributions of tag recoveries were consistent with published patterns of striped bass migration and indicated that this southern overwintering aggregate of striped bass is composed of mixed stocks. Incremental increases in bias-adjusted annual fishing mortality rates (from 0.00-0.26) and decreases in the proportion of fish released alive (from 0.762-0.198) coincided with periods of regulatory change during the 17-year time frame. Our estimates of F fall below the current management triggers and should be considered along with other estimates of F within the striped bass management process.

Transactions of the American Fisheries Society

Evaluation of single and two-stage adaptive sampling designs for estimation of density and abundance of freshwater mussels in a large river

Reliable estimates of abundance are needed to assess consequences of proposed habitat restoration and enhancement projects on freshwater mussels in the Upper Mississippi River (UMR). Although there is general guidance on sampling techniques for population assessment of freshwater mussels, the actual performance of sampling designs can depend critically on the population density and spatial distribution at the project site. To evaluate various sampling designs, we simulated sampling of populations, which varied in density and degree of spatial clustering. Because of logistics and costs of large river sampling and spatial clustering of freshwater mussels, we focused on adaptive and non-adaptive versions of single and two-stage sampling. The candidate designs performed similarly in terms of precision (CV) and probability of species detection for fixed sample size. Both CV and species detection were determined largely by density, spatial distribution and sample size. However, designs did differ in the rate that occupied quadrats were encountered. Occupied units had a higher probability of selection using adaptive designs than conventional designs. We used two measures of cost: sample size (i.e. number of quadrats) and distance travelled between the quadrats. Adaptive and two-stage designs tended to reduce distance between sampling units, and thus performed better when distance travelled was considered. Based on the comparisons, we provide general recommendations on the sampling designs for the freshwater mussels in the UMR, and presumably other large rivers.

River Research and Applications

Modeling distribution of dispersal distances in male white-tailed deer

Dispersal distances and their distribution pattern are important to understanding such phenomena as disease spread and gene flow, but oftentimes dispersal characteristics are modeled as a fixed trait for a given species. We found that dispersal distributions differ for spring and autumn dispersals of yearling male white-tailed deer (Odocoileus virginianus) but that combined data can be adequately modeled based on a log-normal distribution. We modeled distribution of dispersal distances from 3 distinct populations in Pennsylvania and Maryland, USA, based on the relationship between percent forest cover and mean dispersal distance and the relationship between mean and variance of dispersal distances. Our results suggest distributions of distances for dispersing yearling male white-tailed deer can be modeled by simply measuring a readily obtained landscape metric, percent forest cover, which could be used to create generalized spatially explicit disease or gene.

Journal of Wildlife Management

Effect of imperfect detectability on adaptive and conventional sampling: Simulated sampling of freshwater mussels in the upper Mississippi River

Adaptive sampling designs are recommended where, as is typical with freshwater mussels, the outcome of interest is rare and clustered. However, the performance of adaptive designs has not been investigated when outcomes are not only rare and clustered but also imperfectly detected. We address this combination of challenges using data simulated to mimic properties of freshwater mussels from a reach of the upper Mississippi River. Simulations were conducted under a range of sample sizes and detection probabilities. Under perfect detection, efficiency of the adaptive sampling design increased relative to the conventional design as sample size increased and as density decreased. Also, the probability of sampling occupied habitat was four times higher for adaptive than conventional sampling of the lowest density population examined. However, imperfect detection resulted in substantial biases in sample means and variances under both adaptive sampling and conventional designs. The efficiency of adaptive sampling declined with decreasing detectability. Also, the probability of encountering an occupied unit during adaptive sampling, relative to conventional sampling declined with decreasing detectability. Thus, the potential gains in the application of adaptive sampling to rare and clustered populations relative to conventional sampling are reduced when detection is imperfect. The results highlight the need to increase or estimate detection to improve performance of conventional and adaptive sampling designs.

Environmental Monitoring and Assessment

Proximate causes of sexual size dimorphism in horseshoe crabs (Limulus Polyphemus) of the Delaware Bay

The unresolved status of the proximate cause for sexual size dimorphism in horseshoe crabs has practical consequence, because harvest recommendations rely on assumptions about sex-specific growth and maturity. We propose and evaluate competing hypotheses for the proximate cause of sexual size dimorphism in horseshoe crabs (Limulus polyphemus) by comparing size and estimated age frequencies from spring-captured juveniles (n = 9,075) and adults (n = 36,274) to predictions from the competing hypotheses. We found that the number of identifiable juvenile size distributions was greater for females than males and the probability of remaining a juvenile was higher for females than males among older juveniles. These findings are consistent with males maturing earlier than females. Molt increments and mean sizes were similar for male and female juveniles, which is not consistent with differential growth. Among adults, one size distribution accounted for ???90% of females regardless of carapace wear. Also, size ratio of adult females to males was 1.26, and size ratio of the largest adult to largest juvenile female was 1.28. These observations are not consistent with females continuing to molt as adults. Differential-maturity is the most parsimonious explanation for sexual size dimorphism in Delaware Bay horseshoe crabs. In addition, because of a low frequency of juvenile females >195 mm relative to adult females and male-biased sex ratios starting at 105 mm, we hypothesize that females, more than males, migrate as older juveniles and mature in the ocean. Management implications include that (1) minimum size limits, as previously suggested, would not allocate harvest to older adults as intended because size does not indicate age among adult horseshoe crabs in the Delaware Bay population, and (2) the Shuster Horseshoe Crab Reserve, which has reduced harvest on the continental shelf, could be protecting older juveniles and newly mature females from harvest prior to their first spawn.

Journal of Shellfish Research

An adaptive two-stage sequential design for sampling rare and clustered populations

How to design an efficient large-area survey continues to be an interesting question for ecologists. In sampling large areas, as is common in environmental studies, adaptive sampling can be efficient because it ensures survey effort is targeted to subareas of high interest. In two-stage sampling, higher density primary sample units are usually of more interest than lower density primary units when populations are rare and clustered. Two-stage sequential sampling has been suggested as a method for allocating second stage sample effort among primary units. Here, we suggest a modification: adaptive two-stage sequential sampling. In this method, the adaptive part of the allocation process means the design is more flexible in how much extra effort can be directed to higher-abundance primary units. We discuss how best to design an adaptive two-stage sequential sample. ?? 2008 The Society of Population Ecology and Springer.

Population Ecology

Physical and chemical changes in the foreshore of an estuarine beach: Implications for viability and development of horseshoe crab Limulus polyphemus eggs

Knowledge of conditions that favor development of eggs is important for management of species whose population growth is sensitive to early life history survival. Viability and development of the eggs of horseshoe crabs Limulus polyphemus on a sand and gravel beach were evaluated using data gathered on Delaware Bay, USA, from 18 May to 19 June 2004. Eggs were transplanted to pouches and buried in the foreshore for up to 6 wk. Viability and developmental stage were estimated as a function of oxygen and temperature gradients across the foreshore. These gradients were related to the characteristics of the intertidal foreshore sediments, beach water table changes, and frequency of inundation due to tide and swash/backwash processes. Results demonstrate the importance of interstitial temperature for development to larvae and the passive role of sediment characteristics on moisture retention and temperature. Percentage of eggs remaining in egg stage was similar across the foreshore, but more eggs developed to embryos at 0.45 of foreshore width, where moisture and gravel content were greater and interstitial temperature was lower. More eggs developed to larvae at 0.60 and 0.75 of foreshore width, where moisture and gravel content were less but interstitial temperature was higher. The beach above 0.75 of foreshore width came under the influence of wave action or full tidal inundation only during high wave heights or spring tides, and pouches at 0.75 of foreshore width were inundated only 19% of the time. Periodic wetting at this elevation did not reduce overall viability of the eggs. High wave energy events resulted in sediment activation depths to pouches at 0.30 of foreshore width, where loss of eggs due to wave activation was the most important control on the development of eggs. ?? Inter-Research 2008.

Marine Ecology Progress Series

Continuous monitoring of dissolved oxygen and total dissolved gas pressure based on head-space partial pressures

We describe an instrument prototype that measures total dissolved gas pressure (TGP) and dissolved oxygen (DO) without need for standard wetted probe membranes or gas permeable tubing. Measurements were based instead on gas-phase partial pressures that develop within the head-space of a pressure vessel, and on Henry's Law. Performance trials established that differences between standard instrumentation and test instrument OP readings average -1.6-mm Hg (SD = 2.19, range -4.8 to -5.3) within the ΔP range of -72 to 123-mm Hg. Additional trials demonstrated the ability of the instrument to closely follow positive and negative changes in TGP at rates approaching 30-mm Hg/h. Here, the difference between test and standard instrumentation derived TGP averaged 3.4-mm Hg (range 0–41). Differences in ΔP measured by test instrument and gasometer increased with water throughput; mean differences were -3.9, -4.3, and -6.0 for water throughput of 4.6, 6.7, and 7.8 L/min, respectively. However, time to reach 90% of the steady-state instrument reading was highest for low water throughput; equilibrium times averaged 90.9, 44.4, and 44.7 min for water throughput of 4.6, 6.7, 7.8 L/min, respectively. Differences between titration and test-instrumentation based DO measurements were acceptable, averaging -0.11 mg/L (SD = 0.41, range -0.85 to 0.85) over DO from 3.3 to 19.2 mg/L and for 11.1 and 24.2 C. Whereas test instrument DO readings were indistinguishable from Winkler titration at 24.2 C; at 11.1 C there was a tendency for test instrument readings to be lower than Winkler titration at DO < 14 mg/L and higher at DO > 14 mg/L. Trials conducted under biological fouling conditions demonstrated the test instrument's ability to operate with 30% of the maintenance required by standard instrumentation.

Journal of the World Aquaculture Society

Effect of horseshoe crab spawning density on nest disturbance and exhumation of eggs: A simulation study

Because the Delaware Bay horseshoe crab ( Limulus polyphemus ) population is managed to provide for dependent species, such as migratory shorebirds, there is a need to understand the process of egg exhumation and to predict eggs available to foraging shorebirds. A simple spatial model was used to simulate horseshoe crab spawning that would occur on a typical Delaware Bay beach during spring tide cycles to quantify density-dependent nest disturbance. At least 20% of nests and eggs were disturbed for levels of spawning greater than one third of the average density in Delaware Bay during 2004. Nest disturbance increased approximately linearly as spawning density increased from one half to twice the 2004 level. As spawning density increased further, the percentage of eggs that were disturbed reached an asymptote of 70% for densities up to 10 times the density in 2004. Nest disturbance was heaviest in the mid beach zone. Nest disturbance precedes entrainment and begins the process of exhumation of eggs to surface sediments. Model predictions were combined with observations from egg surveys to estimate a snap-shot exhumation rate of 5-9% of disturbed eggs. Because an unknown quantity of eggs were exhumed and removed from the beach prior to the survey, cumulative exhumation rate was likely to have been higher than the snap-shot estimate. Because egg exhumation is density-dependent, in addition to managing for a high population size, identification and conservation of beaches where spawning horseshoe crabs concentrate in high densities (i.e., hot spots) are important steps toward providing a reliable food supply for migratory shorebirds.

Delaware

Transport of horseshoe crab eggs by waves and swash on an estuarine beach: Implications for foraging shorebirds

The abundance of horseshoe crab eggs in the swash zone and remaining on the beach after tide levels fall was evaluated to identify how numbers of eggs available to shorebirds differ with fluctuations in spawning numbers of horseshoe crabs, wave energies and beach elevation changes. Field data were gathered 1-6 June 2004 at Slaughter Beach on the west side of Delaware Bay, USA. Counts of spawning crabs and process data from a pressure transducer and an anemometer and wind vane were related to number of eggs, embryos and larvae taken at depth and on the surface of the foreshore and in the active swash zone using a streamer trap. Beach elevation changes and depths of sediment activation were used to determine the potential for buried eggs to be exhumed by waves and swash. Mean significant wave heights during high water levels ranged from 0.08 to 0.40 m. Spawning counts were low (50-140 females km-1) when wave heights were low; no spawning occurred when wave heights were high. Vegetative litter (wrack) on the beach provides local traps for eggs, making more eggs available for shorebirds. Accumulation of litter on days when wave energy is low increases the probability that eggs will remain on the surface. High wave energies transport more eggs in the swash, but these eggs are dispersed or buried, and fewer eggs remain on the beach. Peaks in the number of eggs in the swash uprush occur during tidal rise and around time of high tide. The number of eggs in transport decreases during falling tide. Many more eggs move in the active swash zone than are found on the beach after water level falls, increasing the efficiency of bird foraging in the swash. Greater numbers of eggs in the swash during rising tide than falling tide and fewer eggs at lower elevations on the beach, imply that foraging becomes less productive as the tide falls and may help account for the tendency of shorebirds to feed on rising tides rather than on falling or low tides on days when no spawning occurs. ?? 2006 Elsevier Ltd. All rights reserved.

Estuarine, Coastal and Shelf Science

Abundance of adult horseshoe crabs (Limulus polylphemus) in Delaware Bay estimated from a bay-wide mark-recapture study

Estimates of the abundance of American horseshoe crabs (Limulus polyphemus) are important to determine egg production and to manage populations for the energetic needs of shorebirds that feed on horseshoe crab eggs. In 2003, over 17,500 horseshoe crabs were tagged and released throughout Delaware Bay, and recaptured crabs came from spawning surveys that were conducted during peak spawning. We used two release cohorts to test for a temporary effect of tagging on spawning behavior and we adjusted the number of releases according to relocation rates from a telemetry study. The abundance estimate was 20 million horseshoe crabs (90% confidence interval: 13-28 million), of which 6.25 million (90% CI: 4.0-8.8 million) were females. The combined harvest rate for Delaware, New Jersey, Virginia, and Maryland in 2003 was 4% (90% CI: 3-6%) of the abundance estimate. Over-wintering of adults in Delaware Bay could explain, in part, differences in estimates from ocean-trawl surveys. Based on fecundity of 88,000 eggs per female, egg production was 5.5??1011 (90% CI: 3.5??1011, 7.7??1011), but egg availability for shorebirds also depended on overlap between horseshoe crab and shorebird migrations, density-dependent bioturbation, and wave-mediated vertical transport.

Delaware, New Jersey

Immunomodulation and disease resistance in postyearling rainbow trout infected with Myxobolus cerebralis, the causative agent of whirling disease

Myxobolus cerebralis , the myxosporean parasite that causes whirling disease, has a number of deleterious effects on its salmonid host. Although it is well established that juvenile salmonids in the active stages of whirling disease mount an immune response to the pathogen, the occurrence and longevity of any related immunomodulatory effects are unknown. In this study, postyearling rainbow trout Oncorhynchus mykiss infected with M. cerebralis were examined for leukocyte functions and for resistance to Yersinia ruckeri , a bacterial pathogen of salmonids. Compared with uninfected controls, M. cerebralis -infected fish showed lower proliferative lymphocyte responses to four mitogens (concanavalin A, pokeweed mitogen, phytohemagglutinin, and lipopolysaccharide). Conversely, M. cerebralis -infected fish displayed greater bactericidal activity of anterior kidney macrophages than did uninfected fish. After bath challenges with Y. ruckeri , M. cerebralis -infected fish had slightly lower survival and a more rapid onset of mortality than did the control fish. Renal tissue and fecal samples from M. cerebralis -infected and uninfected survivors were cultured for the presence of Y. ruckeri , and no difference in prevalence was noted between the two groups. Because immunomodulatory changes in the M. cerebralis -infected fish involved functional enhancement and suppression of different leukocyte populations, disease resistance among M. cerebralis -infected fish in the later stages of whirling disease will probably vary with the secondary pathogen and the nature of immune response the pathogen evokes.

Journal of Aquatic Animal Health

Acoustic-tracking and radio-tracking of horseshoe crabs to assess spawning behavior and subtidal habitat use in delaware bay

This study used telemetry to determine spawning behavior and subtidal habitat use of horseshoe crabs Limulus polyphemus. We attached combined acoustic and radio transmitters to 12 gravid female horseshoe crabs at Ted Harvey Beach and 12 at North Bowers Beach (both on the western shore of Delaware Bay) over a 5-d period before peak spawning on the new moon. Horseshoe crabs were acoustically tracked and radio-tracked daily for 8 d during both high tides and during the incoming dominant (higher) high tide. All horseshoe crabs were relocated at least once, and 83% of females spawned from two to six times (x?? = 3.35, SE = 0.18). Of these females, 85% spawned on two to five consecutive nights (x?? = 3.31, SE = 0.59). Most (95%) females spawned on the beaches where they were initially tagged. Typically, the shoreline used by an individual for spawning ranged from 70 to 1,160 m (x?? = 351 m, SE = 38 m). Between spawning events, horseshoe crabs remained 50-715 m offshore (x?? = 299 m, SE = 57 m) from their established spawning beaches. Following the new moon, all but one (96%) moved out of range of our survey area, which extended approximately 1 km from the shoreline. Multistate mark-recapture models were used to estimate recapture probabilities and daily probabilities of spawning and departure from the vicinity of the spawning beaches. The probability of recapture by acoustic telemetry was high and estimated to be 0.95 (95% confidence interval, 0.73-0.99). Horseshoe crabs equipped with acoustic and radio transmitters have high rates of recapture, can be tracked continually, and can be relocated in both foreshore and inshore habitats.

North American Journal of Fisheries Management

Estimating survival and recruitment in a freshwater mussel population using mark-recapture techniques

We used a mark-recapture method and model averaging to estimate apparent survival, recruitment and rate of population growth in a native freshwater mussel population at a site on the Cacapon River, which is a tributary to the Potomac River. Over 2200 Elliptio complanata , E. fisheriana and Lampsilis cariosa were uniquely tagged over a period of 4 y. Recapture probabilities were higher in spring and summer than in winter except for L. cariosa which had a low probability of recapture regardless of time of year. All three species had high annual adult survival rates (>90%) with lower estimated survival of small ( ≤ 55 mm) mussels (43%-69%). The variation in apparent survival over time was similar for all three species. This suggests that whatever environmental variables affect survival of mussels in this site affected all three species the same. Recruitment rates were low (1-4%) for both E. complanata and L. cariosa , with E. fisheriana having several periods of high (15-23%) recruitment. Distribution within the site was affected by both downstream and upstream movement, though movement rates were generally <1%. Average population growth rates for E. complanata ( (λ = 0.996, se = 0.053), L. cariosa (λ = 0.993, se = 0.076) and E. fisheriana (λ = 1.084, se = 0.276) indicated static populations. Population growth rate approximating 1.0 suggests this site supports a stable freshwater mussel population through a life history strategy of low but constant recruitment and high annual adult survival.

West Virginia