Geology topics

Craig R. Allen

Publications and source records attributed to Craig R. Allen.

At least 19 recordsLinked to original sources

USGS2025

Spatial regimes provide ample early warning of tipping points

Accelerating global change is a hallmark of the Anthropocene, and the interaction of rapid change in climate, land use and land cover makes understanding the response of social-ecological systems to global change difficult to predict. Global change directly and indirectly affects both social-ecological systems and the landscapes in which they are embedded. Spatial heterogeneity in the location, manifestation of, and responses to global change makes spatially explicit approaches to management and conservation necessary. Spatial regimes, a concept derived from resilience theory, are at the forefront of attempts to operationalize and quantify resilience of dynamic landscapes. Spatial regimes are defined as dynamic landscape units that are shaped by a self-organizing set of processes and structures. They have identifiable spatial extents with discrete boundaries at a given scale that exhibit relative homogeneity in process, structure and composition maintained by feedback mechanisms. Here, we describe the concept of, evidence for, and applications of spatial regimes and how spatial regimes relate to scale and telecoupling of change across social-ecological systems. We emphasize the utility of the concept as an early warning of regime change, one that can provide ample early warning. We discuss methods that can be used to detect spatial regimes and uses of the concept for understanding and managing the spatio-temporal response of social-ecological systems to global change.

Advances in Ecological Research↗

USGS2024

Declining pronghorn (Antilocapra americana) population productivity caused by woody encroachment and oil and gas development

Conservation is increasingly focused on preventing losses in species’ populations before they occur. Tracking changes in demographic parameters that can impact a population’s resilience in response to drivers of global change can support early conservation efforts. We assessed trends in population productivity (late summer juveniles per 100 females) relative to drivers of global change in 40 pronghorn ( Antilocapra americana ) herds across sagebrush ( Artemisia spp.) steppe in Wyoming. Pronghorn are an iconic rangeland species that have been exposed to increasing levels of anthropogenic, climatic, and land-use change. Using data collected across the state of Wyoming, we (1) assessed long-term trends in population productivity, (2) identified patterns in large-scale drivers of global change (i.e., climate, land cover change) across pronghorn habitat, and (3) determined the relationship between drivers of global change and population productivity over a 35-year (1984–2019) period. While Wyoming hosts some of the most abundant populations of pronghorn in North America that have been largely stable in recent years, we found many herds are experiencing long-term declines in productivity. Long-term declines in productivity were associated with increases in oil and gas development and woody encroachment. Although increasing across almost all herd units, woody vegetation cover remains at low levels, suggesting that pre-emptive management may help to prevent losses in pronghorn populations.

Global Change and Ecology↗

USGS2022

Phylogenetic risk assessment is robust for forecasting the impact of European insects on North American conifers

Some introduced species cause severe damage, although the majority have little impact. Robust predictions of which species are most likely to cause substantial impacts could focus efforts to mitigate those impacts or prevent certain invasions entirely. Introduced herbivorous insects can reduce crop yield, fundamentally alter natural and managed forest ecosystems, and are unique among invasive species in that they require certain host plants to succeed. Recent studies have demonstrated that understanding the evolutionary history of introduced herbivores and their host plants can provide robust predictions of impact. Specifically, divergence times between hosts in the native and introduced ranges of a nonnative insect can be used to predict the potential impact of the insect should it establish in a novel ecosystem. However, divergence time estimates vary among published phylogenetic datasets, making it crucial to understand if and how the choice of phylogeny affects prediction of impact. Here, we tested the robustness of impact prediction to variation in host phylogeny by using insects that feed on conifers and predicting the likelihood of high impact using four different published phylogenies. Our analyses ranked 62 insects that are not established in North America and 47 North American conifer species according to overall risk and vulnerability, respectively. We found that results were robust to the choice of phylogeny. Although published vascular plant phylogenies continue to be refined, our analysis indicates that those differences are not substantial enough to alter the predictions of invader impact. Our results can assist in focusing biosecurity programs for conifer pests and can be more generally applied to nonnative insects and their potential hosts by prioritizing surveillance for those insects most likely to be damaging invaders.

Ecological Applications↗

USGS2022

Tracking spatial regimes in animal communities: Implications for resilience-based management

Spatial regimes (the spatial extents of ecological states) exhibit strong spatiotemporal order as they expand or contract in response to retreating or encroaching adjacent spatial regimes (e.g., woody plant invasion of grasslands) and human management (e.g., fire treatments). New methods enable tracking spatial regime boundaries via vegetation landcover data, and this approach is being used for strategic management across biomes. A clear advancement would be incorporating animal community data to track spatial regime boundaries alongside vegetation data. In a 41,170-hectare grassland experiencing woody plant encroachment, we test the utility of using animal community data to track spatial regimes via two hypotheses. (H1) Spatial regime boundaries identified via independent vegetation and animal datasets will exhibit spatial synchrony; specifically, grassland:woodland bird community boundaries will synchronize with grass:woody vegetation boundaries. (H2) Negative feedbacks will stabilize spatial regimes identified via animal data; specifically, frequent fire treatments will stabilize grassland bird community boundaries. We used 26 years of bird community and vegetation data alongside 32 years of fire history data. We identified spatial regime boundaries with bird community data via a wombling approach. We identified spatial regime boundaries with vegetation data by calculating spatial covariance between remotely-sensed grass and woody plant cover per pixel. For fire history data, we calculated the cumulative number of fires per pixel. Setting bird boundary strength (wombling R 2 values) as the response variable, we tested our hypotheses with a hierarchical generalized additive model (HGAM). Both hypotheses were supported: animal boundaries synchronized with vegetation boundaries in space and time, and grassland bird communities stabilized as fire frequency increased (HGAM explained 38% of deviance). We can now track spatial regimes via animal community data pixel-by-pixel and year-by-year. Alongside vegetation boundary tracking, tracking animal community boundaries can inform the scale of management necessary to maintain animal communities endemic to desirable ecological states. Our approach will be especially useful for conserving animal communities requiring large-scale, unfragmented landscapes—like grasslands and steppes.

Kansas↗

USGS2020

Red imported fire ants reduce invertebrate abundance, richness, and diversity in Gopher Tortoise burrows

Gopher Tortoise ( Gopherus polyphemus ) burrows support diverse commensal invertebrate communities that may be of special conservation interest. We investigated the impact of red imported fire ants ( Solenopsis invicta ) on the invertebrate burrow community at 10 study sites in southern Mississippi, sampling burrows (1998–2000) before and after bait treatments to reduce fire ant populations. We sampled invertebrates using an ant bait attractant for ants and burrow vacuums for the broader invertebrate community and calculated fire ant abundance, invertebrate abundance, species richness, and species diversity. Fire ant abundance in gopher tortoise burrows was reduced by >98% in treated sites. There was a positive treatment effect on invertebrate abundance, diversity, and species richness from burrow vacuum sampling which was not observed in ant sampling from burrow baits. Management of fire ants around burrows may benefit both threatened gopher tortoises by reducing potential fire ant predation on hatchlings, as well as the diverse burrow invertebrate community. Fire-ant management may also benefit other species utilizing tortoise burrows, such as the endangered Dusky Gopher Frog and Schaus swallowtail butterfly. This has implications for more effective biodiversity conservation via targeted control of the invasive fire ant at gopher tortoise burrows.

Mississippi↗

USGS2020

Coerced regimes: Management challenges in the Anthropocene

Management frequently creates system conditions that poorly mimic the conditions of a desirable self-organizing regime. Such management is ubiquitous across complex systems of people and nature and will likely intensify as these systems face rapid change. However, it is highly uncertain whether the costs (unintended consequences, including negative side effects) of management but also social dynamics can eventually outweigh benefits in the long term. We introduce the term “coerced regime” to conceptualize this management form and tie it into resilience theory. The concept encompasses proactive and reactive management to maintain desirable and mitigate undesirable regime conditions, respectively. A coerced regime can be quantified through a measure of the amount of management required to artificially maintain its desirable conditions. Coerced regimes comprise “ghosts” of self-sustaining desirable system regimes but ultimately become “dead regimes walking” when these regimes collapse as soon as management is discontinued. We demonstrate the broad application of coerced regimes using distinct complex systems of humans and nature (human subjects, aquatic and terrestrial environments, agriculture, and global climate). We discuss commonalities and differences between these examples to identify trade-offs between benefits and harms of management. The concept of coerced regimes can spur thinking and inform management about the duality of what we know and can envision versus what we do not know and therefore cannot envision: a pervasive sustainability conundrum as planet Earth swiftly moves toward a future without historical analogue

Ecology and Society↗

USGS2019

Fire legacies in eastern ponderosa pine forests

Disturbance legacies structure communities and ecological memory, but due to increasing changes in disturbance regimes, it is becoming more difficult to characterize disturbance legacies or determine how long they persist. We sought to quantify the characteristics and persistence of material legacies (e.g., biotic residuals of disturbance) that arise from variation in fire severity in an eastern ponderosa pine forest in North America. We compared forest stand structure and understory woody plant and bird community composition and species richness across unburned, low‐, moderate‐, and high‐severity burn patches in a 27‐year‐old mixed‐severity wildfire that had received minimal post‐fire management. We identified distinct tree densities (high: 14.3 ± 7.4 trees per ha, moderate: 22.3 ± 12.6, low: 135.3 ± 57.1, unburned: 907.9 ± 246.2) and coarse woody debris cover (high: 8.5 ± 1.6% cover per 30 m transect, moderate: 4.3 ± 0.7, low: 2.3 ± 0.6, unburned: 1.0 ± 0.4) among burn severities. Understory woody plant communities differed between high‐severity patches, moderate‐ and low‐severity patches, and unburned patches (all p < 0.05). Bird communities differed between high‐ and moderate‐severity patches, low‐severity patches, and unburned patches (all p < 0.05). Bird species richness varied across burn severities: low‐severity patches had the highest (5.29 ± 1.44) and high‐severity patches had the lowest (2.87 ± 0.72). Understory woody plant richness was highest in unburned (5.93 ± 1.10) and high‐severity (5.07 ± 1.17) patches, and it was lower in moderate‐ (3.43 ± 1.17) and low‐severity (3.43 ± 1.06) patches. We show material fire legacies persisted decades after the mixed‐severity wildfire in eastern ponderosa forest, fostering distinct structures, communities, and species in burned versus unburned patches and across fire severities. At a patch scale, eastern and western ponderosa system responses to mixed‐severity fires were consistent.

Nebraska↗

USGS2019

Socioecological determinants of drought impacts and coping strategies for ranching operations in the Great Plains

In Great Plains rangelands, drought is a recurring disturbance. Ranchers in this region expect to encounter drought but may not be adequately prepared for it. Efforts to encourage drought preparedness would benefit from a better understanding of the conditions under which managers make decisions to minimize the impacts of drought. We tested the direct and moderating roles of the drought hazard and the social-ecological context on drought impacts and response. This study was conducted with ranchers in western and central South Dakota and Nebraska following the drought that began in 2012. We surveyed ranchers regarding the effects of the drought and their responses and used multimodel analysis to explore the relationships among measures of drought preparedness, drought response, and drought impacts. Drought severity was the primary predictor of all impacts, but specific types of impacts were varied depending on the operation’s enterprise mix, resources, and management. The socioecological characteristics of the ranch system predicted drought response actions taken, by either providing the necessary resources and capacity to take action or creating sensitivity in the system that required action to be taken. We conclude with recommendations for learning from current drought experiences in order to better adapt to future drought events.

Rangeland Ecology and Management↗

USGS2019

Relationships between wildfire burn severity, cavity-nesting bird assemblages and habitat in an eastern ponderosa pine forest

Historically, eastern ponderosa pine ( Pinus ponderosa ) forests were described as sparse patches of old-growth trees maintained by frequent, low-severity fires; however, in recent decades, there have been a number of large mixed-severity wildfires throughout the range of these forests. Wildlife responses to severe fire disturbance in eastern ponderosa pine forests are not well understood. Our study investigates how cavity-nesting bird species in an eastern ponderosa pine forest are impacted by burn severity. The objectives of our study were to: (1) identify the community composition of cavity-nesting birds in a 27 y old burn of mixed severity, (2) assess how habitat variables important to cavity-nesting birds differ in the mixed-severity fire, and (3) determine what habitat variables best predict bird occurrence 27 y after mixed-severity fire. We surveyed 56 sites across four burn severity classes, ranging from unburned to severely burned forest, in the Pine Ridge region of Nebraska. We measured multiple habitat characteristics (tree and snag diameter at breast height (DBH), coarse woody debris (CWD), tree and snag density, shrub height, and shrub cover) in May–August 2016 and conducted bird count surveys between 25 May and 8 June 2016. Cavity-nesting bird species' occurrence varied among the burn severity variables. Burn severity class (unburned, low severity, moderate severity, high severity) was a significant predictor of habitat characteristics for cavity-nesting birds, including tree density, snag density, mean snag DBH, variance in DBH, and CWD, which also was the best indicator of cavity-nesting bird community composition. We report evidence that mixed-severity wildfires in eastern ponderosa pine forests create variation in habitat characteristics and cavity-nesting bird occurrence.

Nebraska↗

USGS2019

Ecosystem size predicts social dynamics in recreational fisheries

Recreational fisheries are complex adaptive systems that are inherently difficult to manage due to a heterogeneous user group (consumptive vs. non-consumptive) that utilize patchily distributed resources on the landscape (lakes, rivers, coastlines). There is a need to identify which system components can effectively predict and be used to manage nonlinear and cross-scale dynamics within these systems. We examine how ecosystem size or waterbody size can be used to explain complicated and elusive angler-resource dynamics in recreational fisheries. Waterbody size determined angler behavior among 48 Nebraska, U.S.A. waterbodies during an 11-year study period. Angler behavior was often unique and nonlinear across waterbody sizes. For example, anglers spent more time fishing and harvested more fish at larger waterbodies compared to smaller waterbodies. Time fished increased across smaller waterbodies but reached a threshold at larger waterbodies. The number of fish released increased as a function of waterbody size across smaller waterbodies but then plateaued. Subtle changes in waterbody size caused abrupt changes in angler behavior—that is, waterbody size structures angler-resource dynamics in recreational fisheries. We believe that including waterbody size, a simple and easily measured metric, in fisheries management will increase effectiveness of cross-scale actions and minimize unintended consequences for recreational fisheries. Applying uniform management actions (e.g., harvest regulations) across small and large waterbodies may elicit contrasting angler-resource responses. Waterbody size may also be useful for understanding angler typologies. Based on our findings, we expect that ecosystem size is a prominent and valuable system component that will determine and explain coupled user-resource dynamics in other complex adaptive systems.

Ecology and Society↗

USGS2018

Climate change implications for irrigation and groundwater in the Republican River Basin, U.S.A.

This study investigates the influence of climate change on groundwater availability, and thereby, irrigation across political boundaries within the United States’ High Plains aquifer. A regression model is developed to predict changes in irrigation according to predicted changes in precipitation and temperature from a downscaled dataset of 32 general circulation models (GCMs). Precipitation recharge changes are calculated with precipitation-recharge curves developed for prognostic representations of precipitation across the Nebraska-Colorado-Kansas area and within the Republican River Basin focal landscape. Irrigation-recharge changes are scaled with changes in irrigation. The groundwater responses to climate forcings are then simulated under new pumping and recharge rates using a MODFLOW groundwater flow model. Results show that groundwater pumping and recharge both will increase and that the effects of groundwater pumping will overshadow those from natural fluctuations. Groundwater levels will decline more in areas with irrigation-driven decreasing trends in the baseline. The methodologies and predictions of this study can inform long-term water planning and the design of management strategies that help avoid and resolve water-related conflicts, enabling irrigation sustainability.

Colorado, Kansas, Nebraska↗

USGS2018

Resilience in environmental risk and impact assessment: Concepts and measurement

Different resilience concepts have different assumptions about system dynamics, which has implications for resilience-based environmental risk and impact assessment. Engineering resilience (recovery) dominates in the risk assessment literature but this definition does not account for the possibility of ecosystems to exist in multiple regimes. In this paper we discuss resilience concepts and quantification methods. Specifically, we discuss when a system fails to show engineering resilience after disturbances, indicating a shift to a potentially undesired regime. We show quantification methods that can assess the stability of this new regime to inform managers about possibilities to transform the system to a more desired regime. We point out the usefulness of an adaptive inference, modelling and management approach that is based on reiterative testing of hypothesis. This process facilitates learning about, and reduces uncertainty arising from risk and impact.

Bulletin of Environmental Contamination and Toxico↗

USGS2018

The distribution and role of functional abundance in cross‐scale resilience

The cross‐scale resilience model suggests that system‐level ecological resilience emerges from the distribution of species’ functions within and across the spatial and temporal scales of a system. It has provided a quantitative method for calculating the resilience of a given system and so has been a valuable contribution to a largely qualitative field. As it is currently laid out, the model accounts for the spatial and temporal scales at which environmental resources and species are present and the functional roles species play but does not inform us about how much resource is present or how much function is provided. In short, it does not account for abundance in the distribution of species and their functional roles within and across the scales of a system. We detail the ways in which we would expect species’ abundance to be relevant to the cross‐scale resilience model based on the extensive abundance literature in ecology. We also put forward a series of testable hypotheses that would improve our ability to anticipate and quantify how resilience is generated, and how ecosystems will (or will not) buffer recent rapid global changes. This stream of research may provide an improved foundation for the quantitative evaluation of ecological resilience.

Ecology↗

USGS2018

A method to detect discontinuities in census data

The distribution of pattern across scales has predictive power in the analysis of complex systems. Discontinuity approaches remain a fruitful avenue of research in the quest for quantitative measures of resilience because discontinuity analysis provides an objective means of identifying scales in complex systems and facilitates delineation of hierarchical patterns in processes, structure, and resources. However, current discontinuity methods have been considered too subjective, too complicated and opaque, or have become computationally obsolete; given the ubiquity of discontinuities in ecological and other complex systems, a simple and transparent method for detection is needed. In this study, we present a method to detect discontinuities in census data based on resampling of a neutral model and provide the R code used to run the analyses. This method has the potential for advancing basic and applied ecological research.

Ecology and Evolution↗

USGS2018

Social–ecological landscape patterns predict woody encroachment from native tree plantings in a temperate grassland

Afforestation is often viewed as the purposeful planting of trees in historically nonforested grasslands, but an unintended consequence is woody encroachment, which should be considered part of the afforestation process. In North America's temperate grassland biome, Eastern redcedar ( Juniperus virginiana L.) is a native species used in tree plantings that aggressively invades in the absence of controlling processes. Cedar is a well-studied woody encroacher, but little is known about the degree to which cedar windbreaks, which are advocated for in agroforestry programs, are contributing to woody encroachment, what factors are associated with cedar spread from windbreaks, nor where encroachment from windbreaks is occurring in contemporary social–ecological landscapes. We used remotely sensed imagery to identify the presence and pattern of woody encroachment from windbreaks in the Nebraska Sandhills. We used multimodel inference to compare three classes of models representing three hypotheses about factors that could influence cedar spread: (a) windbreak models based on windbreak structure and design elements; (b) abiotic models focused on local environmental conditions; and (c) landscape models characterizing coupled human-natural features within the broader matrix. Woody encroachment was evident for 23% of sampled windbreaks in the Nebraska Sandhills. Of our candidate models, our inclusive landscape model carried 92% of the model weight. This model indicated that encroachment from windbreaks was more likely near roadways and less likely near farmsteads, other cedar plantings, and waterbodies, highlighting strong social ties to the distribution of woody encroachment from tree plantings across contemporary landscapes. Our model findings indicate where additional investments into cedar control can be prioritized to prevent cedar spread from windbreaks. This approach can serve as a model in other temperate regions to identify where woody encroachment resulting from temperate agroforestry programs is emerging.

Nebraska↗

USGS2018

The perpetual state of emergency that sacrifices protected areas in a changing climate

A modern challenge for conservation biology is to assess the consequences of policies that adhere to assumptions of stationarity (e.g. historic norms) in an era of global environmental change. Such policies may result in unexpected and surprising levels of mitigation given future climate change trajectories, especially as agriculture looks to protected areas to buffer against production losses during periods of environmental extremes. Here, we conduct a scenario impact assessment to determine the potential impact of climate change scenarios on the rates at which lands enrolled in the Conservation Reserve Program (CRP) lands are authorized for emergency biomass removal. Grassland biomass on CRP lands is authorized for ‘emergency’ harvesting for agricultural use when precipitation for the last four months falls below 40 percent of the normal, or ‘historical’ mean, precipitation for that four-month period. We develop and analyze scenarios under the condition that policy will continue to operate under assumptions of stationarity, thereby authorizing emergency biomass harvesting solely as a function of precipitation departure from historic norms. Model projections show the historical likelihood of authorizing emergency biomass harvesting in any given year in the northern Great Plains was 33.28 ± 0.96%, according to long-term weather records. Emergency biomass harvesting became the norm (>50% of years) in the scenario reflecting continued increases in emissions and a decrease in growing season precipitation, and areas in the Great Plains with higher historical mean annual rainfall were disproportionately affected and experienced a greater increase in emergency biomass removal. Emergency biomass harvesting decreased only in the scenario reflecting rapid reductions in emissions. Our scenario impact analysis indicates that biomass from lands enrolled in the CRP will be used primarily as a buffer for agriculture in an era of climatic change, unless policy guidelines are adapted or climate change projections significantly depart from the current consensus.

Montana, Nebraska, North Dakota, South Dakota, Wyo↗

USGS2018

Imidacloprid sorption and transport in cropland, grass buffer and riparian buffer soils

An understanding of neonicotinoid sorption and transport in soil is critical for determining and mitigating environmental risk associated with the most widely used class of insecticides. The objective of this study was to evaluate mobility and transport of the neonicotinoid imidacloprid (ICD) in soils collected from cropland, grass vegetative buffer strip (VBS), and riparian VBS soils. Soils were collected at six randomly chosen sites within grids that encompassed all three land uses. Single-point equilibrium batch sorption experiments were conducted using radio-labeled ( 14 C) ICD to determine solid–solution partition coefficients ( K d ). Column experiments were conducted using soils collected from the three vegetation treatments at one site by packing soil into glass columns. Water flow was characterized by applying Br − as a nonreactive tracer. A single pulse of 14 C-ICD was then applied, and ICD leaching was monitored for up to 45 d. Bromide and ICD breakthrough curves for each column were simulated using CXTFIT and HYDRUS-1D models. Sorption results indicated that ICD sorbs more strongly to riparian VBS ( K d = 22.6 L kg −1 ) than crop ( K d = 11.3 L kg −1 ) soils. Soil organic C was the strongest predictor of ICD sorption ( p < 0.0001). The column transport study found mean peak concentrations of ICD at 5.83, 10.84, and 23.8 pore volumes for crop, grass VBS, and riparian VBS soils, respectively. HYDRUS-1D results indicated that the two-site, one-rate linear reversible model best described results of the breakthrough curves, indicating the complexity of ICD sorption and demonstrating its mobility in soil. Greater sorption and longer retention by the grass and riparian VBS soils than the cropland soil suggests that VBS may be a viable means to mitigate ICD loss from agroecosystems, thereby preventing ICD transport into surface water, groundwater, or drinking water resources.

Vadose Zone Journal↗

USGS2018

Doublethink and scale mismatch polarize policies for an invasive tree

Mismatches between invasive species management policies and ecological knowledge can lead to profound societal consequences. For this reason, natural resource agencies have adopted the scientifically-based density-impact invasive species curve to guide invasive species management. We use the density-impact model to evaluate how well management policies for a native invader ( Juniperus virginiana ) match scientific guidelines. Juniperus virginiana invasion is causing a sub-continental regime shift from grasslands to woodlands in central North America, and its impacts span collapses in endemic diversity, heightened wildfire risk, and crashes in grazing land profitability. We (1) use land cover data to identify the stage of Juniperus virginiana invasion for three ecoregions within Nebraska, USA, (2) determine the range of invasion stages at individual land parcel extents within each ecoregion based on the density-impact model, and (3) determine policy alignment and mismatches relative to the density-impact model in order to assess their potential to meet sustainability targets and avoid societal impacts as Juniperus virginiana abundance increases. We found that nearly all policies evidenced doublethink and policy-ecology mismatches, for instance, promoting spread of Juniperus virginiana regardless of invasion stage while simultaneously managing it as a native invader in the same ecoregion. Like other invasive species, theory and literature for this native invader indicate that the consequences of invasion are unlikely to be prevented if policies fail to prioritize management at incipient invasion stages. Theory suggests a more realistic approach would be to align policy with the stage of invasion at local and ecoregion management scales. There is a need for scientists, policy makers, and ecosystem managers to move past ideologies governing native versus non-native invader classification and toward a framework that accounts for the uniqueness of native species invasions, their anthropogenic drivers, and their impacts on ecosystem services.

Nebraska↗