Geology topics

Christopher Holmquist-Johnson

Publications and source records attributed to Christopher Holmquist-Johnson.

7 recordsLinked to original sources

USGS2026

Predicting reach-scale macroinvertebrate community changes due to declining flows in an aridland river

Understanding the connection between streamflow and macroinvertebrate community structure is critical for managing river ecosystems under scenarios of change caused by human activities and drought. Streamflow influences physical habitat characteristics, including depth, water velocity, and substrate composition, which structure macroinvertebrate communities. Although strong empirical evidence has linked macroinvertebrates to these variables, most studies are correlative, and predictive approaches that link altered streamflow to changes in habitat availability and community structure remain limited. To address this gap, we coupled benthic macroinvertebrate surveys with reach-scale, 2-dimensional hydraulic models to quantify changes in community structure in response to altered streamflows. We characterized macroinvertebrate communities and physical habitat conditions in riffle, run, and pool mesohabitats across 3 reaches of a free-flowing section of the Verde River (Arizona, USA) over 3 y and developed hydraulic models using overflight data, ground surveys, and streamflow monitoring. Macroinvertebrate communities differed among mesohabitats, with riffles supporting higher macroinvertebrate densities and pools exhibiting higher taxonomic richness. The 2-dimensional hydraulic models indicated that declining streamflows could reduce the area of suitable habitat in riffles and runs relative to pools, potentially shifting the distribution of mesohabitats and altering community composition. These changes may lead to declines in overall macroinvertebrate diversity and abundance under reduced flow conditions. By explicitly linking streamflow to habitat availability and community structure, this study demonstrates how integrating hydraulic modeling with biological surveys can improve predictions of ecological response to flow alteration. This framework provides a basis for flow management strategies aimed at maintaining habitat heterogeneity and supporting biodiversity in river networks.

Arizona↗

USGS2025

Contrasting long-term trends in channel width and shoreline complexity

Drought and reservoir management in the Colorado River Watershed have decreased peak flows and sediment loads reducing the ability of rivers to change their channels. Multiple studies have documented the resulting decrease in channel width, but less attention has been paid to long-term trends in shoreline complexity, including the number and size of islands. We used a sequence of aerial photographs and satellite images collected in 13 different years to measure decadal trends in channel complexity in Gray Canyon along the Green River, Utah. We quantified channel width and shoreline complexity for each year of available imagery. Between 1938 and 2021 peak flows decreased by 34% and channel width decreased by 18% confirming observations elsewhere in the system of decreasing width in response to decreasing flows. Over the same period, however, shoreline complexity increased by 5.5% and the number of islands almost tripled, indicating that merging of islands into the encroaching floodplain was outpaced by formation and growth of new islands. The increase in shoreline complexity occurred between 1938 and 2006. Since 2006 there has been no further net increase, suggesting that room for new island formation may now be limited in the narrower channel. Sequences of channel delineations already mapped to quantify long-term changes in channel width at other sites could easily be used to determine whether the increases in shoreline complexity we observed at Gray Canyon are matched elsewhere.

Colorado, Utah, Wyoming↗

USGS2024

Environmental Flows for Riverine EcoSystem Habitats (E-FRESH) decision support tool user guide

The E-FRESH decision support tool is intended to facilitate assessment and comparison of different flow management scenarios on available habitat for various aquatic, riparian, and invertebrate species of interest. This tool also allows users to conduct a variety of analyses ranging from large-scale data processing and export to detailed and complex flow scenario manipulation around water rights and alternative climate futures.

Report↗

USGS2020

Predicting bird guilds using vegetation composition and structure on a wild and scenic river in Arizona

Riparian areas are among the most ecologically diverse terrestrial ecosystems but make up <2% of landscape area in southwestern USA. Many species of resident and neotropical migratory birds utilize riparian habitats for breeding, foraging, and nesting. We quantified vegetation composition and structure to predict bird guilds on Wild and Scenic portions of the Verde River, Arizona. We grouped plant species into guilds based on similar functional traits to describe composition. We surveyed birds during the breeding and migrating season to determine abundance and categorized species into guilds using preferences of breeding habitat, foraging substrate, and nest placement. Riparian obligate and facultative breeding guilds were most common. Both vegetation composition and structure were useful predictors of birds. Vegetation structure was most complex in gallery riparian forest. Abundance of riparian-obligate birds in the breeding guild were positively associated with vegetation structure of dense, multi-canopy canopy and tall trees. Abundance of most bird guilds were positively associated with composition of tall trees ( Populus fremontii , Salix gooddingii ) and drought tolerant shrubs ( Prosopis velutina, Celtis reticulata ). Our findings show complex riparian habitat important to wildlife is created by both composition and structure of near-stream vegetation that is tied to hydrology and sensitive to flow change.

Arizona↗

USGS2018

Efficient hydrogeological characterization of remote stream corridors using drones

This project demonstrates the successful use of small unoccupied aircraft system (sUASs) for hydrogeological characterization of a remote stream reach in a rugged mountain terrain. Thermal infrared, visual imagery, and derived digital surface models are used to inform conceptual models of groundwater/surface‐water exchange and efficiently geolocate zones of preferential groundwater discharge that can be quantified using various ground‐based methodology.

Hydrological Processes↗

USGS2016

Development of a decision support tool for water and resource management using biotic, abiotic, and hydrological assessments of Topock Marsh, Arizona

Topock Marsh is a large wetland adjacent to the Colorado River and the main feature of Havasu National Wildlife Refuge (Havasu NWR) in southern Arizona. In 2010, the U.S. Fish and Wildlife Service (FWS) and Bureau of Reclamation began a project to improve water management capabilities at Topock Marsh and protect habitats and species. Initial construction required a drawdown, which caused below-average inflows and water depths in 2010–11. U.S. Geological Survey Fort Collins Science Center (FORT) scientists collected an assemblage of biotic, abiotic, and hydrologic data from Topock Marsh during the drawdown and immediately after, thus obtaining valuable information needed by FWS. Building upon that work, FORT developed a decision support system (DSS) to better understand ecosystem health and function of Topock Marsh under various hydrologic conditions. The DSS was developed using a spatially explicit geographic information system package of historical data, habitat indices, and analytical tools to synthesize outputs for hydrologic time periods. Deliverables include high-resolution orthorectified imagery of Topock Marsh; a DSS tool that can be used by Havasu NWR to compare habitat availability associated with three hydrologic scenarios (dry, average, wet years); and this final report which details study results. This project, therefore, has addressed critical FWS management questions by integrating ecologic and hydrologic information into a DSS framework. This DSS will assist refuge management to make better informed decisions about refuge operations and better understand the ecological results of those decisions by providing tools to identify the effects of water operations on species-specific habitat and ecological processes. While this approach was developed to help FWS use the best available science to determine more effective water management strategies at Havasu NWR, technologies used in this study could be applied elsewhere within the region.

Arizona↗

USGS2015

Experimental flights using a small unmanned aircraft system for mapping emergent sandbars

The US Geological Survey and Parallel Inc. conducted experimental flights with the Tarantula Hawk (T-Hawk) unmanned aircraft system (UAS ) at the Dyer and Cottonwood Ranch properties located along reaches of the Platte River near Overton, Nebraska, in July 2013. We equipped the T-Hawk UAS platform with a consumer-grade digital camera to collect imagery of emergent sandbars in the reaches and used photogrammetric software and surveyed control points to generate orthophotographs and digital elevation models (DEMS ) of the reaches. To optimize the image alignment process, we retained and/or eliminated tie points based on their relative errors and spatial resolution, whereby minimizing the total error in the project. Additionally, we collected seven transects that traversed emergent sandbars concurrently with global positioning system location data to evaluate the accuracy of the UAS survey methodology. The root mean square errors for the elevation of emergent points along each transect across the DEMS ranged from 0.04 to 0.12 m. If adequate survey control is established, a UAS combined with photogrammetry software shows promise for accurate monitoring of emergent sandbar morphology and river management activities in short (1–2 km) river reaches.

Nebraska↗