Geology topics

Bradley P. Harris

Publications and source records attributed to Bradley P. Harris.

6 recordsLinked to original sources

USGS2022

Juvenile salmon habitat use drives variation in growth and highlights vulnerability to river fragmentation

Widespread stream network fragmentation from dams and culverts has altered habitat connectivity in river ecosystems and presents an acute threat to migratory fish. To support watershed management for an iconic migratory fish group, we assessed juvenile salmon growth outcomes across habitat use strategies and characterized how these life histories may be impacted by stream connectivity loss. Juvenile coho salmon ( Oncorhynchus kisutch ) in the Big Lake drainage, Alaska, USA, were individually tracked over 2012–2013 and categorized into habitat use behaviors, with fish either remaining in streams throughout freshwater residency or migrating seasonally to overwinter in lake habitats. Size, growth rate, and body condition of smolts ( n = 1113) were compared across habitat use strategies. Juvenile coho salmon that moved seasonally to lake overwintering habitats, the most frequently observed strategy, grew faster and were significantly larger as smolts compared to their counterparts who remained in streams exclusively (spring Age 1 fish: 18% larger by weight, 9% faster growth rate; spring Age 2+ fish: 26% heavier, 11% faster growth). Environmental data from a subset of overwinter lakes indicate that greater foraging opportunity and lower energy costs may be implicated in growth advantages conferred by lentic overwintering strategies. Habitat use strategies requiring seasonal migrations, however, increased exposure to stream connectivity loss, and fish blocked from accessing a potential overwinter headwater lake by a culvert and dam had lowest body condition among study groups. Stream network fragmentation restricts access to preferred overwinter habitats, and our findings suggest this may constrain freshwater rearing strategies associated with strong juvenile coho salmon growth. As size at smolt has been implicated as a driver of salmon survival through ocean residency, reduced freshwater habitat connectivity during juvenile stages may have deleterious impacts on later marine life stages. Consequently, conservation of stream connectivity across lentic and lotic habitats represents an important watershed management priority for juvenile salmon.

Alaska↗

USGS2021

Connectivity between lentic and lotic freshwater habitats identified as a conservation priority for coho salmon

Juvenile Pacific salmon exhibit diverse habitat use and migration strategies to navigate high environmental variability and predation risk during freshwater residency. Increasingly, urbanization and climate-driven hydrological alterations are affecting the availability and quality of aquatic habitats in salmon catchments. Thus, conservation of freshwater habitat integrity has emerged as an important challenge in supporting salmon life-history diversity as a buffer against continuing ecosystem changes. To inform catchment management for salmon, information on the distribution and movement dynamics of juvenile fish throughout the annual seasonal cycle is needed. A number of studies have assessed the ecology of juvenile coho salmon ( Oncorhynchus kisutch ) during summer and autumn seasons; catchment use by this species throughout the annual cycle is less well characterized, particularly in high-latitude systems. Here, n = 3,792 tagged juvenile coho salmon were tracked throughout two complete annual cycles to assess basin-wide distribution and movement behaviour of this species in a subarctic, ice-bearing catchment. Juvenile coho salmon in the Big Lake basin, Alaska, exhibited multiple habitat use and movement strategies across seasons; however, summer rearing in lotic mainstem environments followed by migration to lentic overwinter habitats was identified as a prominent behaviour, with two-thirds of tracked fish migrating en masse to concentrate in a small subset of upper catchment lakes for the winter. In contrast, the most significant tributary overwintering site (8% of tracked fish) occurred below a culvert and dam, blocking juvenile fish passage to a headwater lake, indicating that these fish may have been restricted from reaching preferred lentic overwinter habitats. These findings emphasize the importance of maintaining aquatic connectivity to lentic habitats as a conservation priority for coho salmon during freshwater residency.

Aquatic Conservation: Marine and Freshwater Ecosys↗

USGS2020

Quantifying and addressing the prevalence and bias of study designs in the environmental and social sciences

Building trust in science and evidence-based decision-making depends heavily on the credibility of studies and their findings. Researchers employ many different study designs that vary in their risk of bias to evaluate the true effect of interventions or impacts. Here, we empirically quantify, on a large scale, the prevalence of different study designs and the magnitude of bias in their estimates. Randomised designs and controlled observational designs with pre-intervention sampling were used by just 23% of intervention studies in biodiversity conservation, and 36% of intervention studies in social science. We demonstrate, through pairwise within-study comparisons across 49 environmental datasets, that these types of designs usually give less biased estimates than simpler observational designs. We propose a model-based approach to combine study estimates that may suffer from different levels of study design bias, discuss the implications for evidence synthesis, and how to facilitate the use of more credible study designs.

Nature Communications↗

USGS2020

Combining fisheries surveys to inform marine species distribution modelling

Ecosystem-scale examination of fish communities typically involves creating spatio-temporally explicit relative abundance distribution maps using data from multiple fishery-independent surveys. However, sampling performance varies by vessel and sampling gear, which may influence estimated species distribution patterns. Using GAMMs, the effect of different gear–vessel combinations on relative abundance estimates at length was investigated using European fisheries-independent groundfish survey data. We constructed a modelling framework for evaluating relative efficiency of multiple gear–vessel combinations. 19 northeast Atlantic surveys for 254 species-length combinations were examined. Space-time variables explained most of the variation in catches for 181/254 species-length cases, indicating that for many species, models successfully characterized distribution patterns when combining data from disparate surveys. Variables controlling for gear efficiency explained substantial variation in catches for 127/254 species-length data sets. Models that fail to control for gear efficiencies across surveys can mask changes in the spatial distribution of species. Estimated relative differences in catch efficiencies grouped strongly by gear type, but did not exhibit a clear pattern across species’ functional forms, suggesting difficulty in predicting the potential impact of gear efficiency differences when combining survey data to assess species’ distributions and highlighting the importance of modelling approaches that can control for gear differences.

ICES Journal of Marine Science↗

USGS2018

Acoustic telemetry and benthic habitat mapping inform the spatial ecology of Shortnose Sturgeon in the Hudson River, New York, USA

A history of overexploitation and industrialization of riverine habitats has impacted the Shortnose Sturgeon Acipenser brevirostrum , leading this species to become one of the earliest listed under the U.S. Endangered Species Act. The present understanding of Shortnose Sturgeon spatial ecology is based on observations from a limited number of Atlantic coastal rivers. To better understand Shortnose Sturgeon in the Hudson River, New York, we used acoustic telemetry to characterize seasonal habitat use and to identify regions of the river where seasonal sturgeon activity occurred. From 2012 to 2016, 101 adult fish were tagged and tracked, and sturgeon detections per unit effort (a metric of fish observation standardized by search effort) were evaluated against benthic habitat variables by using generalized additive regression models. Models indicated strong habitat associations in the spring season defined by gravel-dominated substrates and specific depth ranges, presumably associated with spawning activity. During summer, Shortnose Sturgeon were more dispersed, associating with muddy habitats, whereas in fall/winter, sturgeon congregated in specific regions of the river. These data demonstrate that river use and habitat associations vary seasonally and identify important areas for managing overlap between seasonal habitat use by Shortnose Sturgeon and human activity on the river.

New York↗

USGS2018

Ichthyophonus in sport-caught groundfishes from southcentral Alaska

This report of Ichthyophonus in common sport-caught fishes throughout the marine waters of southcentral Alaska represents the first documentation of natural Ichthyophonus infections in lingcod Ophiodon elongates and yelloweye rockfish Sebastes ruberrimus . In addition, the known geographic range of Ichthyophonus in black rockfish S. melanops has been expanded northward to include southcentral Alaska. Among all species surveyed, the infection prevalence was highest (35%, n = 334) in Pacific halibut Hippoglossus stenolepis . There were no gross indications of high-level infections or clinically diseased individuals. These results support the hypothesis that under typical conditions Ichthyophonus can occur at high infection prevalence accompanied with low-level infection among a variety of fishes throughout the eastern North Pacific Ocean, including southcentral Alaska.

Alaska↗