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Barbara E. Kus

Publications and source records attributed to Barbara E. Kus.

At least 73 records · Page 4Linked to original sources

Distribution and demography of coastal cactus wrens (Campylorhynchus brunneicapillus) in southern San Diego County, California—2020 data summary

Executive Summary Surveys for coastal Cactus Wren ( Campylorhynchus brunneicapillus ) were done in 378 established plots in southern San Diego County in 2020, encompassing three genetic clusters (Otay, Lake Jennings, and Sweetwater/Encanto genetic clusters). Two surveys were completed at each plot between March 1 and July 31. Cactus Wrens were detected in 131 plots (35 percent of plots). This is a slight increase over the proportion of occupied plots in 2019. One hundred and nine Cactus Wren territories were detected across all survey plots in 2020, an increase from 83 in 2019. At least 85 percent of Cactus Wren territories were occupied by pairs, and 62 fledglings were observed in 2020. There were 89 color-banded Cactus Wrens observed in 2020, 84 of which we could identify to individual. Adults of known age ranged from 1 to at least 6 years old. Adult Cactus Wrens moved on average 0.2 kilometers (km; maximum 3.8 km) from their 2019 territories to their 2020 territories. Cactus Wrens that fledged in 2019 moved on average 1.2 km (maximum 9.9 km) to their 2020 territories. No known-identity Cactus Wrens moved between genetic clusters from 2019 to 2020. Vegetation at Cactus Wren plots typically was dominated by coastal sage scrub shrubs such as California sagebrush ( Artemisia californica ), lemonadeberry ( Rhus integrifolia ), California buckwheat ( Eriogonum fasciculatum ), and broom baccharis ( Baccharis sarothroides ). Very little dead or unhealthy cactus was observed within Cactus Wren survey plots. Thirty-eight percent of plots had at least 25 percent of the cactus crowded or overtopped by vines and shrubs. Non-native annual cover was greater than 25 percent at 35 percent of plots.

California

Distribution and abundance of Least Bell's Vireos and Southwestern Willow Flycatchers on the middle San Luis Rey River, San Diego County, southern California—2020 data summary

We surveyed for Least Bell’s Vireos ( Vireo bellii pusillus ; vireo) and Southwestern Willow Flycatchers ( Empidonax traillii extimus ; flycatcher) along the San Luis Rey River, between College Boulevard in Oceanside and Interstate 15 in Fallbrook, California (middle San Luis Rey River), in 2020. Surveys were conducted from April 13 to July 13 (vireo) and from May 14 to July 13 (flycatcher). We found 192 vireo territories, at least 150 of which were occupied by pairs. Vireo territories increased by 40 percent from 2019 to 2020 in the portion of the middle San Luis Rey River that burned as a result of a wildfire in 2017. In contrast, vireo territories decreased by 5 percent from 2019 to 2020 in the unburned portion of the middle San Luis Rey River. Vireos used six different habitat types in the survey area: (1) willow-cottonwood, (2) mixed willow riparian, (3) riparian scrub, (4) upland scrub, (5) willow-sycamore, and (6) non-native. Forty-nine percent of the vireos were detected in habitat characterized as willow-cottonwood, and 93 percent of the vireos were detected in habitat with greater than 50-percent native plant cover. Of the 17 banded vireos detected in the survey area, 6 were resighted with a full color-band combination. Two other vireos with single (natal) federal bands were recaptured, identified, and color-banded in 2020. Eight vireos with a single dark blue federal band, indicating that they were banded as nestlings on the lower San Luis Rey River (LSLR), could not be recaptured for identification. One vireo with a single gold federal band, indicating that it was banded as a nestling at Marine Corps Base Camp Pendleton (MCBCP), could not be recaptured for identification. The two natal vireos that were recaptured on the middle San Luis Rey River dispersed from 2.6 to 6.2 kilometers (km) from their natal territories. Banded vireos with a known age ranged from 1 to 8 years old. One resident flycatcher was observed in the survey area in 2020. The resident flycatcher (male) was detected in a territory of mixed willow habitat with greater than 50-percent native plant cover. He was detected as a single male from May 27 to July 2, 2020, and no evidence of pairing or nesting was observed. The male flycatcher was resighted with a unique color-band combination and had occupied the same territory since 2018.

California

Modeling Least Bell’s Vireo habitat suitability in current and historic ranges in California

We developed a habitat suitability model for the federally endangered Least Bell’s Vireo ( Vireo bellii pusillus ) across its current and historic range in California. The vireo disappeared from most of its range by the 1980s, remaining only in southern California and northern Baja California, Mexico. This decline was due to habitat loss and introduction of brood parasitic brown-headed cowbirds ( Molothrus ater ) into California in the late 1800s. Habitat protection and management since the mid-1980s increased southern California vireo populations with small numbers of birds recently expanding back into the historic range. The vireo habitat model will help meet the U.S. Fish and Wildlife Service recovery objectives by distinguishing specific areas to survey for new occurrences; characterizing important vireo-habitat relationships; and identifying areas for habitat management. We constructed models based on the vireo’s current range to predict suitable habitat in the historic range, which differs substantially in environmental conditions. We used the partitioned Mahalanobis D 2 modeling technique designed to predict habitat suitability in areas not included in a sample of species locations and under novel conditions. We constructed alternative models with different combinations of environmental variables hypothesized to be important components of vireo habitat. We selected a set of best performing models to predict suitable habitat for a riparian vegetation grid buffered 500 meters across California. Most models for southern California did not predict suitable habitat in the historic range. The top performing model has an area under the curve value of 0.93. It is a simple model and discriminated among riparian habitats, with only 6 percent predicted as suitable. On average, suitable vireo habitat had more than 60-percent riparian vegetation and flat land at the 150-meter scale, little-to-no slope, and was within 130 meters of water.

California

Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego County, southern California—2019 data summary

We surveyed for Least Bell’s Vireos ( Vireo bellii pusillus ; vireo) along the San Luis Rey River, between College Boulevard in Oceanside and Interstate 15 in Fallbrook, California (middle San Luis Rey River), in 2019, and we surveyed and conducted nest monitoring for Southwestern Willow Flycatchers ( Empidonax traillii extimus ; flycatcher) in a survey area where breeding had historically been documented on the middle San Luis Rey River, in 2019. Surveys were conducted from April 11 to June 24 (vireo) and from May 16 to July 15 (flycatcher). We found 179 vireo territories, at least 124 of which were occupied by pairs. Vireo territories increased by 100 percent within the portion of the middle San Luis Rey River that burned as a result of a wildfire in 2017. In contrast, vireo territories increased by 5 percent within the unburned portion of the middle San Luis Rey River. Vireos used five different habitat types in the survey area: mixed willow riparian, willow-cottonwood, riparian scrub, willow-sycamore, and upland scrub. Fifty-two percent of the vireos were detected in habitat characterized as mixed willow, and 92 percent of the vireos were detected in habitat with greater than 50 percent native plant cover. Of the 12 banded vireos detected in the survey area, 5 were resighted with a full color-band combination. One adult female with a unique color-band combination immigrated to the middle San Luis Rey River from Marine Corps Base Camp Pendleton (MCBCP). Five other vireos with single (natal) federal bands were recaptured, identified, and color banded in 2019. Two vireos with a single dark blue federal band, indicating that they were banded as nestlings on the lower San Luis Rey River (LSLR), could not be recaptured for identification. The five natal vireos that were recaptured on the middle San Luis Rey River dispersed from 1.4 to 8.3 kilometers (km) from their natal territories. Banded vireos with a known age ranged from 1 to 11 years old. One resident flycatcher was observed in the survey area in 2019. The resident flycatcher (male) was detected in a territory of mixed willow habitat with greater than 50 percent native plant cover. He was detected as a single male from May 16 to July 17, 2019, and no evidence of pairing or nesting was observed. The male flycatcher with a unique color-band combination occupied the same territory in 2018 and 2019.

California

Management of the brown-headed cowbird: Implications for endangered species and agricultural damage mitigation

The brown-headed cowbird ( Molothrus ater ; cowbird) is unique among North American blackbirds (Icteridae) because it is managed to mitigate the negative effects on endangered songbirds and economic losses in agricultural crops. Cowbird brood parasitism can further affect species that are considered threatened or endangered due to anthropogenic land uses. Historically, cowbirds have often been culled without addressing ultimate causes of songbird population declines. Similar to other North American blackbirds, cowbirds depredate agricultural crops, albeit at a lower rate reported for other blackbird species. Conflicting information exists on the extent of agricultural damage caused by cowbirds and the effectiveness of mitigation measures for application to management. In this paper, we reviewed the progress that has been made in cowbird management from approximately 2005 to 2020 in relation to endangered species. We also reviewed losses to the rice ( Oryza sativa ) crop attributed to cowbirds and the programs designed to reduce depredation. Of the 4 songbird species in which cowbirds have been managed, both the Kirtland’s warbler ( Dendroica kirtlandii ) and black-capped vireo ( Vireo atricapilla ) have been removed from the endangered species list following population increases in response to habitat expansion. Cowbird trapping has ceased for Kirtland’s warbler but continues for the vireo. In contrast, least Bell’s vireo ( V. bellii pusillus ) and southwestern willow flycatcher ( Empidonax traillii extimus ) still require cowbird control after modest increases in suitable habitat. Our review of rice depredation by cowbirds revealed models that have been created to determine the number of cowbirds that can be taken to decrease rice loss have been useful but require refinement with new data that incorporate cowbird population changes in the rice growing region, dietary preference studies, and current information on population sex ratios and female cowbird egg laying. Once this information has been gathered, bioenergetic and economic models would increase our understanding of the damage caused by cowbirds.

California

Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego County, Southern California—2018 data summary

We surveyed for Least Bell’s Vireos ( Vireo bellii pusillus ; vireo) and Southwestern Willow Flycatchers ( Empidonax traillii extimus ; flycatcher) along the San Luis Rey River, between College Boulevard in Oceanside and Interstate 15 in Fallbrook, California (middle San Luis Rey River), in 2018. Surveys were conducted from April 17 to July 16 (vireo) and from May 16 to July 27 (flycatcher). We found 148 vireo territories, at least 90 of which were occupied by pairs. Six additional transient vireos were detected. Vireos used six different habitat types in the survey area: mixed willow, willow-cottonwood, riparian scrub, willow-sycamore, upland scrub, and non-native habitat. Forty-one percent of the vireos were detected in habitat characterized as mixed willow, and 97 percent of the vireos were detected in habitat with greater than 50 percent native plant cover. Of 10 banded vireos detected in the survey area, 5 had been given full color-band combinations prior to 2018. Four other vireos with single (natal) federal bands were recaptured, identified, and color banded in 2018. One vireo with a single dark blue federal band, indicating that it was banded as a nestling on the lower San Luis Rey River, could not be recaptured for identification. One resident flycatcher and eight transient flycatchers of unknown subspecies were observed in the survey area in 2018. The resident flycatcher (male) was detected in a territory of mixed willow habitat with greater than 95 percent native plant cover. He was detected as a single male from May 24 to July 17, 2018, and no evidence of pairing or nesting was observed. The male flycatcher, detected with a single natal band, was recaptured, identified, and given a unique color combination in 2018. The male flycatcher was originally banded as a nestling on the middle San Luis Rey River in 2016. The eight transient flycatchers were detected from May 25 to June 8, 2018, in mixed willow riparian, willow-cottonwood, and riparian scrub habitat with greater than 95 percent native plant cover.

California

Least Bell’s Vireo (Vireo bellii pusillus) and Southwestern Willow Flycatcher (Empidonax traillii extimus) surveys in the Sepulveda Dam Basin, Los Angeles County, California—2018 data summary

Executive Summary We surveyed for Least Bell’s Vireos ( Vireo bellii pusillus ; vireo) and Southwestern Willow Flycatchers ( Empidonax traillii extimus ; flycatcher) in cooperation with the U.S. Army Corps of Engineers along Bull Creek, Haskell Creek, and the Los Angeles River (Sepulveda Dam project area) in Los Angeles County, California, in 2018. Four vireo surveys were conducted between April 27 and July 18, 2018, and three flycatcher surveys were conducted between May 24 and July 18, 2018. We found 14 territorial male vireos, 7 of which were confirmed as paired. Sixty-four percent of vireos were detected along the Los Angeles River, 21 percent along Haskell Creek, and 14 percent along Bull Creek. Eighty-six percent of vireos were detected in habitat characterized as mixed willow, and all vireos were detected in habitat with greater than 50 percent native plant cover. No flycatchers were observed in the survey area in 2018.

California

Least Bell’s Vireo (Vireo bellii pusillus) and Southwestern Willow Flycatcher (Empidonax traillii extimus) surveys in the Hansen Dam Basin, Los Angeles County, California—2018 data summary

Executive Summary We surveyed for Least Bell’s Vireos ( Vireo bellii pusillus ; vireo) and Southwestern Willow Flycatchers ( Empidonax traillii extimus ; flycatcher) in cooperation with the U.S. Army Corps of Engineers along Big Tujunga Creek in the Hansen Dam Basin in Los Angeles County, California, in 2018. Four vireo surveys were conducted between April 25 and July 17, 2018, and three flycatcher surveys were conducted between May 22 and July 17, 2018. We found 77 territorial male vireos, 54 of which were confirmed as paired. Seventy-seven percent of vireos were detected in habitat characterized as mixed willow, and 84 percent of vireos were detected in habitat with greater than 50 percent native plant cover. One transient Willow Flycatcher of unknown subspecies was observed in the survey area in 2018.

California

Distinguishing recent dispersal from historical genetic connectivity in the coastal California gnatcatcher

Habitat loss and fragmentation are primary threats to biodiversity worldwide. We studied the impacts of habitat loss and fragmentation on genetic connectivity and diversity among local aggregations of the California gnatcatcher ( Polioptila californica californica ) across its U.S. range. With a dataset of 268 individuals genotyped at 19 microsatellite loci, we analyzed genetic structure across the range using clustering analyses, exact tests for population differentiation, and a pedigree analysis to examine the spatial distribution of first-order relatives throughout the study area. In addition, we developed a habitat suitability model and related percent suitable habitat to genetic diversity indices within aggregations at two spatial scales. We detected a single genetic cluster across the range, with weak genetic structure among recently geographically isolated aggregations in the northern part of the range. The pedigree analysis detected closely related individuals across disparate aggregations and across large geographic distances in the majority of the sampled range, demonstrating that recent long-distance dispersal has occurred within this species. Genetic diversity was independent of suitable habitat at a local 5-km scale, but increased in a non-linear fashion with habitat availability at a broader, 30-km scale. Diversity declined steeply when suitable habitat within 30-km fell below 10%. Together, our results suggest that California gnatcatchers retain genetic connectivity across the majority of the current distribution of coastal sage scrub fragments, with the exception of some outlying aggregations. Connectivity may help support long-term persistence under current conservation and management strategies. However, emerging structure among more remote aggregations and associations between available habitat and genetic diversity also suggest that continued loss of habitat could threaten diversity and connectivity in the future.

California

Recovery planning in a dynamic system: Integrating uncertainty into a decision support tool for an endangered songbird

Along the Santa Clara River in California, populations of the federally and state-listed Least Bell's Vireo ( Vireo bellii pusillus ) are recovering from near extirpation. Habitat protection and restoration, as well as controlling rates of brood parasitism, are thought to be the primary drivers of this recovery. Continuing successful management of this population faces multiple challenges due to the highly dynamic and unpredictable nature of the system, lack of clearly defined and measurable recovery criteria, parametric and stochastic uncertainty, and data limitations. Many of these management challenges are not unique to Least Bell's Vireo and require careful balancing of limited resources into the future. We developed a decision support tool as a user interface for exploring the underlying uncertainty in a population viability analysis under an array of different management scenarios. The tool was designed to assist with the planning and coordination between conservation partners in the region in three distinct aspects of the decision-making process: defining the problem and setting clear goals and objectives, exploring the consequences of potential alternative actions, and identifying criteria for ongoing evaluation and monitoring. The general framework for the design of this decision support tool is broadly applicable to many management and decision-making scenarios that share these common challenges.

California

Monitoring breeding and migration of neotropical migratory birds at Naval Base Coronado, Remote Training Site, Warner Springs, San Diego County, California, 5-year summary, 2013–17

We operated a bird banding station on the Naval Base Coronado, Remote Training Site, Warner Springs (RTSWS), in northeastern San Diego County, California, during the bird breeding season (spring/summer) from 2013 to 2017 and during migration (fall) from 2013 to 2016. The station was established in spring 2013 as part of the Monitoring Avian Productivity and Survivorship (MAPS) program and continued into the fall for the first 4 years as part of a long-term monitoring program for neotropical migratory birds. We captured 705 individuals of 58 species during the MAPS/breeding season from 2013 to 2017 (12–13 days each year in April through August), 79 percent of which were newly banded during the MAPS season (555), 8 percent of which were recaptures banded in previous years (57), and 13 percent of which we released unbanded (64 hummingbirds and 29 other birds that were released or escaped prior to banding). Sixty individuals were captured more than once within a year during MAPS. Bird capture rate averaged 19 ± 1 captures per 100 net-hours (range 17–20) across 5 years. Annual species richness ranged from 28 (2017) to 42 (2014). The average species richness per day was highest in 2014 (9 ± 3) and lowest in 2016 (6 ± 2). Bushtit ( Psaltriparus minimus ) was the most abundant breeding species captured, followed by Spotted Towhee ( Pipilo maculatus ), Oak Titmouse ( Baeolophus inornatus ), Anna’s Hummingbird ( Calypte anna ), House Wren ( Troglodytes aedon ), Ash-throated Flycatcher ( Myiarchus cinerascens ), California Scrub-jay ( Aphelocoma californica ), Bewick’s Wren ( Thryomanes bewickii ), Acorn Woodpecker ( Melanerpes formicivorus ), California Towhee ( Melozone crissalis ), and Western Bluebird ( Sialia mexicana ). Each of these 11 breeding species accounted for at least 5 percent of captures in any 1 year. Fifty-seven percent of known-sex captures were female and 43 percent were male. Thirty-three percent of known-age captures were juveniles. Peaks in number of birds captured were in the first and last weeks of April, and the greatest number of species was captured in early May.

California

Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego County, southern California—2017 data summary

We surveyed for Least Bell’s Vireos (LBVI) ( Vireo bellii pusillus ) and Southwestern Willow Flycatchers (SWFL) ( Empidonax traillii extimus ) along the San Luis Rey River, between College Boulevard in Oceanside and Interstate 15 in Fallbrook, California (middle San Luis Rey River), in 2017. Surveys were conducted from April 13 to July 11 (LBVI) and from May 16 to July 28 (SWFL). We found 146 LBVI territories, at least 107 of which were occupied by pairs. Five additional transient LBVIs were detected. LBVIs used five different habitat types in the survey area: mixed willow, willow-cottonwood, willow-sycamore, riparian scrub, and upland scrub. Forty-four percent of the LBVIs occurred in habitat characterized as mixed willow and 89 percent of the LBVI territories occurred in areas with greater than 50 percent native plant cover. Of 16 banded LBVIs detected in the survey area, 8 had been given full color-band combinations prior to 2017. Four other LBVIs with single (natal) federal bands were recaptured and banded in 2017. Three LBVIs with single dark blue federal bands indicating that they were banded as nestlings on the lower San Luis Rey River and one LBVI with a single gold federal band indicating that it was banded as a nestling on Marine Corps Base Camp Pendleton (MCBCP) could not be recaptured for identification. One banded LBVI emigrated from the middle San Luis Rey River to the lower San Luis Rey River in 2017. One resident SWFL territory and one transient Willow Flycatcher of unknown subspecies (WIFL) were observed in the survey area in 2017. The resident SWFL territory, which was comprised of mixed willow habitat (5–50 percent native plant cover), was occupied by a single male from May 22 to June 21, 2017. No evidence of pairing or nesting activity was observed. The SWFL male was banded with a full color-combination indicating that he was originally banded as a nestling on the middle San Luis Rey River in 2014 and successfully bred in the survey area in 2016. The male SWFL left the middle San Luis Rey River after June 21, 2017 and subsequently was detected on the San Dieguito River on June 26, 2017, by USGS biologists. The transient WIFL was detected on May 30, 2017, in mixed willow habitat comprised of 50–95 percent of native plant cover.

California

Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego, southern California—2016 data summary

Executive Summary We surveyed for Least Bell’s Vireos (LBVI) ( Vireo bellii pusillus ) and Southwestern Willow Flycatchers (SWFL) ( Empidonax traillii extimus ) along the San Luis Rey River, between College Boulevard in Oceanside and Interstate 15 in Fallbrook, California (middle San Luis Rey River), in 2016. Surveys were done from March 30 to July 11 (LBVI) and from May 18 to July 30 (SWFL). We found 142 LBVI territories, at least 106 of which were occupied by pairs. Six additional transient LBVIs were detected. Of 20 banded LBVIs detected in the survey area, 9 had been given full color-band combinations prior to 2016, although we were unable to determine the exact color combination of 1 female LBVI. Seven other LBVIs with single (natal) federal bands were recaptured and banded in 2016. Four vireos with single dark blue federal bands indicating that they were banded as nestlings on the lower San Luis Rey River could not be recaptured for identification. Three SFWL territories were observed in the survey area in 2016. Two territories were occupied by pairs and one by a male of unknown breeding status. Both pairs attempted to nest at least once, and both pairs were successful, fledging three young each. Nesting began in early June and continued into July. Brown-Headed Cowbird ( Molothrus ater ) eggs were not observed in either nest. An additional 12 transient Willow Flycatchers of unknown subspecies were detected in 2016. Two of the five resident SWFLs were originally banded as nestlings on Marine Corps Base Camp Pendleton. One male and one female were banded as nestlings on Camp Pendleton in 2009 and 2011, respectively. One natal male of unknown breeding status, originally banded as a nestling on the middle San Luis Rey River in 2015, was recaptured and given a unique color combination in 2016. This male was later detected on Marine Corps Base Camp Pendleton.

California

Monitoring breeding and migration of neotropical migratory birds at Point Loma, San Diego County, California, 5-year summary, 2011–15

Executive Summary We operated a bird banding station on the Point Loma peninsula in western San Diego County, California, during spring and summer from 2011 to 2015. The station was established in 2010 as part of a long-term monitoring program for neotropical migratory birds during spring migration and for breeding birds as part of the Monitoring Avian Productivity and Survivorship (MAPS) program. During spring migration (April and May), 2011–15, we captured 1,760 individual birds of 54 species, 91 percent (1,595) of which were newly banded, fewer than 1 percent (3) of which were recaptures that were banded in previous years, and 9 percent (143 hummingbirds, 2 hawks, and 17 other birds) of which we released unbanded. We observed an additional 22 species that were not captured. Thirty-four individuals were captured more than once. Bird capture rate averaged 0.49 ± 0.07 captures per net-hour (range 0.41–0.56). Species richness per day averaged 6.87 ± 0.33. Cardellina pusilla (Wilson’s warbler) was the most abundant spring migrant captured, followed by Empidonax difficilis (Pacific-slope flycatcher), Vireo gilvus (warbling vireo), Zonotrichia leucophrys (white-crowned sparrow), and Selasphorus rufus (rufous hummingbird). Captures of white-crowned sparrow decreased, and captures of Pacific-slope flycatcher increased, over the 5 years of our study. Fifty-six percent of known-sex individuals were male and 44 percent were female. The peak number of new species arriving per day ranged from April 1 (2013-six species) to April 16 (2012-five species). A significant correlation was determined between the number of migrants captured each day per net-hour and the density of echoes on the Next-Generation Radar (NEXRAD) images across all 5 years, and in each year except 2014. NEXRAD radar imagery appears to be a useful tool for detecting pulses in migration. Our results indicate that Point Loma provides stopover habitat during migration for 76 migratory species, including 20 species of conservation concern. Two of these species, Vireo bellii pusillus (least Bell’s vireo) and Empidonax traillii (willow flycatcher) are listed as State and (or) federally threatened or endangered. Except for Archilochus alexandri (black-chinned hummingbird) and Setophaga occidentalis (hermit warbler), which arrived later during the migratory season in latter years of our study, median arrival dates for migratory species tended to be earlier each year or did not change across 5 years. Of the five most common migratory species, white-crowned sparrow and rufous hummingbird arrived earlier in latter years of the study, but Pacific-slope flycatcher, warbling vireo, and Wilson’s warbler median arrival dates were variable and showed no trend. We captured 1,680 individuals of 66 species during the MAPS/breeding season (May through August) across the 5 years of our study, 72 percent (1,211) of which were newly banded, 10 percent (167) of which were recaptures, and 18 percent (302 hummingbirds and other birds that escaped prior to banding) of which we released unbanded. Bird capture rate averaged 0.65 ± 0.21 captures per net-hour (range 0.12–2.54). Species richness per day ranged from 9.80 ± 5.01 to 14.20 ± 4.57. Calypte anna (Anna’s hummingbird) was the most abundant breeding species captured, followed by Oreothlypis celata (orange-crowned warbler), Psaltriparus minimus (bushtit), Pipilo maculatus (spotted towhee), Thryomanes bewickii (Bewick’s wren), Melozone crissalis (California towhee), and Chamaea fasciata (wrentit). Fifty-one percent of known-sex captures were female, and 49 percent were male. Thirty-one percent of known-age captures were juveniles. Populations of bushtits and orange-crowned warbler decreased significantly over 5 years. Anna’s hummingbird abundance was high for 4 years, and then decreased in 2015. Bewick’s wren and wrentit populations were highest in 2015. There was no obvious pattern in spotted towhee and California towhee abundance across 5 years. Annual breeding productivity for most species was low in 2014 and high in 2015. Bewick’s wren had the highest breeding productivity of the six most commonly captured species, followed by bushtit. Orange-crowned warbler had the lowest breeding productivity. Breeding productivity was a significant predictor of population size the next year for bushtit, but not for any other resident breeding species examined. Adult survivorship was generally high from 2013 to 14, and low from 2014 to 15. Wrentits had the highest survivorship of the most common species captured, followed by California towhee and orange-crowned warbler. Adult survivorship was lowest for bushtits and spotted towhees. Adult survivorship was a significant predictor of population size for bushtits, but not for any other resident species examined. Our monitoring results indicate that Point Loma provides breeding habitat for seven species of conservation concern. One of these species, the federally threatened Polioptila californica californica (California gnatcatcher), was documented breeding at the study site.

California

Female-biased sex ratio, polygyny, and persistence in the endangered Southwestern Willow Flycatcher (Empidonax traillii extimus)

Demographic changes in populations, such as skewed sex ratios, are of concern to conservationists, especially in small populations in which stochastic and other events can produce declines leading to extirpation. We documented a decline in one of the few remaining populations of Southwestern Willow Flycatcher ( Empidonax traillii extimus ) in southern California, USA, which dropped from 40 to 5 adults between 2000 and 2015. Declines were unequal between sexes (94% for males, 82% for females). Adult sex ratios were female-biased in 10 of 16 yr. The proportion of paired males that were polygynous ranged from 0% to 100%, depending on the ratio of females to males in the adult population. Some males paired with up to 5 females simultaneously. We investigated the role of nestling sex ratio in the female-biased adult sex ratio by using genetic techniques to determine sex from blood samples collected from 162 nestlings in 72 nests from 2002 to 2009. Both population-level and within-brood nestling sex ratios were female-biased, and were not influenced by nest order (first or subsequent), parental mating type (monogamous or polygynous), or year. Disproportionately more females than males were recruited into the breeding population, mirroring nestling and fledgling sex ratios. It thus appears that a skewed nestling sex ratio has contributed to a female-biased adult population, which in turn has influenced mating behavior. We propose that the capacity for polygyny, which generally occurs at low levels in Southwestern Willow Flycatchers, has allowed this population to persist through a decline that might otherwise have resulted in extinction.

The Condor

Conservation genomics reveals multiple evolutionary units within Bell’s Vireo ( Vireo bellii ).

The Bell’s Vireo ( Vireo bellii ) is a widespread North American species of bird that has declined since the mid-1960s primarily due to habitat modification. Throughout its range, Bell’s Vireo populations are regulated under varying degrees of protection; however, the species has never been characterized genetically. Therefore, the current taxonomy used to guide management decisions may misrepresent the true evolutionary history for the species. We sequenced 86 individuals for ND2 and genotyped 48 individuals for genome-wide SNPs to identify distinct lineages within Bell’s Vireo. Phylogenetic analyses uncovered two distinct clades that are separated in the arid southwestern United States, near the border of the Chihuahuan and Sonoran Deserts. These clades diverged from each other approximately 1.11–2.04 mya. The timing of diversification, geographic location, and niche modeling of the east/west divergence suggest vicariance as a mode of diversification for these two lineages. Analyses of the SNP dataset provided additional resolution and indicated the Least Bell’s Vireo populations are a distinct evolutionary lineage. Our genetic evidence, together with information from morphology and behavior, suggests that the Bell’s Vireo complex involves two species, each containing two separate subspecies. This new information has implications for the federal, state and other listing status of Bell’s Vireo throughout its range.

Arizona, California, Missouri, Nebraska, Nevada, O

Habitat fragmentation in coastal southern California disrupts genetic connectivity in the cactus wren ( Campylorhynchus brunneicapillus )

Achieving long-term persistence of species in urbanized landscapes requires characterizing population genetic structure to understand and manage the effects of anthropogenic disturbance on connectivity. Urbanization over the past century in coastal southern California has caused both precipitous loss of coastal sage scrub habitat and declines in populations of the cactus wren ( Campylorhynchus brunneicapillus ). Using 22 microsatellite loci, we found that remnant cactus wren aggregations in coastal southern California comprised 20 populations based on strict exact tests for population differentiation, and 12 genetic clusters with hierarchical Bayesian clustering analyses. Genetic structure patterns largely mirrored underlying habitat availability, with cluster and population boundaries coinciding with fragmentation caused primarily by urbanization. Using a habitat model we developed, we detected stronger associations between habitat-based distances and genetic distances than Euclidean geographic distance. Within populations, we detected a positive association between available local habitat and allelic richness and a negative association with relatedness. Isolation-by-distance patterns varied over the study area, which we attribute to temporal differences in anthropogenic landscape development. We also found that genetic bottleneck signals were associated with wildfire frequency. These results indicate that habitat fragmentation and alterations have reduced genetic connectivity and diversity of cactus wren populations in coastal southern California. Management efforts focused on improving connectivity among remaining populations may help to ensure population persistence.

California

Monitoring avian productivity and survivorship (MAPS) 5-year summary, Naval Outlying Landing Field, Imperial Beach, southwestern San Diego County, California, 2009-13

During 2009–13, a Monitoring Avian Productivity and Survivorship (MAPS) banding station was operated at the Naval Outlying Landing Field (NOLF), Imperial Beach, in southwestern San Diego County, California. The station was established as part of a long-term monitoring program of Neotropical migratory bird populations on NOLF and helps Naval Base Coronado (NOLF is a component) meet the goals and objectives of Department of Defense Partners in Flight program and the Birds and Migratory Birds Management Strategies of the Naval Base Coronado Integrated Natural Resources Management Plan. During 2009–13, captures averaged 644 ±155 per year. Fifty-seven species were captured, of which 44 are Neotropical migratory species and 33 breed at the MAPS station. Twenty-two sensitive species were detected, including Least Bell’s Vireo ( Vireo bellii pusillus ), Willow Flycatcher ( Empidonax traillii ), Yellow-breasted Chat ( Icteria virens ) and Yellow Warbler ( Setophaga petechia ). Local population trends varied among species and years, as did annual productivity (number of young per adult). We found no significant relationship between productivity and the observed population size in the subsequent year for any species, nor did we find an association between productivity and precipitation for the current bio-year. Similarly, survivorship varied across species and years, and there was no obvious relationship between adult survivorship and observed population size for any species except Wrentit ( Chamaea fasciata ), for which the relationship was positive. Adult survivorship was unrelated to precipitation at the MAPS station. Additional years of data will be required to generate sample sizes adequate for more rigorous analyses of survivorship and productivity as predictors of population growth.

California