Geology topics

Anthony J. Barley

Publications and source records attributed to Anthony J. Barley.

3 recordsLinked to original sources

USGS2025

Speciation genomics in the tiger whiptail lizards ( Aspidoscelis tigris complex)

The transition from small genetic to genome-scale datasets for studying biodiversity has revealed that genetic exchange through introgressive hybridization is a widespread phenomenon in nature. Despite this, a lack of high-quality reference genomes for most non-model species limits our understanding of the impact of this process for many taxonomic groups. This restricts the range of insights that genomic tools can provide for conservation biologists, who often hope to employ genomic datasets to accurately identify historically isolated lineages to protect and to predict their evolutionary fate in the face of environmental change. Tiger whiptail lizards ( Aspidoscelis tigris complex) are an abundant and important ecological component of ecosystems across the southwestern United States. In this study, we assembled and annotated a chromosome-level reference genome for A. t. stejnegeri from coastal California. We then used this reference genome to reconstruct patterns of speciation and admixture within the larger species complex, finding evidence that gene flow is widespread both geographically and across the genome.

northern Mexico, southwestern United States↗

USGS2023

On the origin and current distribution of the Oceania Snake-Eyed Skink (Cryptoblepharus poecilopleurus) in the Hawaiian archipelago

Because of its extreme isolation and lack of historical connection to a mainland, the Hawaiian Archipelago is thought to have no native nonvolant terrestrial reptiles. Several squamate species have been introduced to the archipelago, likely starting with early Polynesian contact, and increasing as human traffic in the Pacific has amplified. Of the earlier introductions, one species of skink, Cryptoblepharus poecilopleurus , belongs to a genus known for its ability to naturally disperse long distances, even across oceans. The earliest herpetofaunal surveys from Hawai‘i describe the skink as widespread and abundant across the archipelago. A recent phylogenetic analysis reveals substantial haplotype divergence between Hawaiian individuals and other known populations in the Pacific, raising the possibility that this species was an early and natural arrival to the archipelago before human contact. Recent surveys suggest that the species has undergone a dramatic reduction in range across the archipelago, possibly due to the invasion of highly competitive species. Given this information, we aim to further assess the origin of C. poecilopleurus in Hawai‘i, determine its current range, and suggest specific needs for future work. Here, we review the earliest European voyages in the Pacific that are known to have sampled C. poecilopleurus , review literature and museum specimens to develop an understanding of this species’ history in the islands, survey the island of O‘ahu to characterize its current range, and provide preliminary genetic analyses to show the relationship of the Hawai’i populations to the rest of the Pacific.

Hawaii↗

USGS2021

Conservation status of the world’s skinks (Scincidae): Taxonomic and geographic patterns in extinction risk

Our knowledge of the conservation status of reptiles, the most diverse group of terrestrial vertebrates, has improved dramatically over the past decade, but still lags behind that of the other tetrapod groups. Here, we conduct the first comprehensive assessment (~92% of the world’s ~1,714 described species) of the conservation status of skinks (Scincidae), the most speciose reptile family worldwide. Using IUCN criteria, we found that ~20% of species are threatened with extinction, and nine species are Extinct or Extinct in the Wild. The highest levels of threat are evident in Madagascar, and the Neotropics, and in the subfamilies Mabuyinae, Eugongylinae and Scincinae. The vast majority of threatened skink species were listed based primarily on their small geographic ranges (Criterion B, 83%; Criterion D2, 13%). Although the population trend of 42% of species were stable, 14% were found to have declining populations. The key threats to skinks are habitat loss due to agriculture, invasive species, and biological resource use. Distributions of 61% of species did not overlap with protected areas. Despite our improved knowledge of the conservation status of the world’s skinks, 8% of species remain to be assessed and 221 species (14%) are listed as Data Deficient. The conservation status of almost a quarter of the world’s skink species thus remains unknown. We use our updated knowledge of the conservation status of the group to develop and outline the priorities for the conservation assessment and management of the world’s skink species.

Biological Conservation↗